[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 32 items for (author: boyaci & h)

EMDB-23210:
Clostridioides difficile RNAP with fidaxomicin
Method: single particle / : Boyaci H, Campbell EA

PDB-7l7b:
Clostridioides difficile RNAP with fidaxomicin
Method: single particle / : Boyaci H, Campbell EA, Darst SA, Chen J

EMDB-21406:
Mycobacterium tuberculosis WT RNAP transcription initiation intermediate structure with Sorangicin
Method: single particle / : Lilic M, Boyaci H

EMDB-21407:
Mycobacterium tuberculosis WT RNAP transcription open promoter complex with Sorangicin
Method: single particle / : Lilic M, Boyaci H

EMDB-21408:
Mycobacterium tuberculosis RNAP S456L mutant transcription initiation intermediate structure with Sorangicin
Method: single particle / : Lilic M, Boyaci H

EMDB-21409:
Mycobacterium tuberculosis RNAP S456L mutant open promoter complex
Method: single particle / : Lilic M, Boyaci H

EMDB-22573:
Mycobacterium tuberculosis Wildtype-RNAP holoenzyme/RbpA/CarD/Sor/AP3 - PreRP2 class
Method: single particle / : Lilic M, Chen J, Darst SA, Campbell EA

EMDB-22575:
Mycobacterium tuberculosis Wildtype-RNAP holoenzyme/RbpA/CarD/Sor/AP3 - RP2 class
Method: single particle / : Lilic M, Chen J, Darst SA, Campbell EA

EMDB-22577:
Mycobacterium tuberculosis Wildtype-RNAP holoenzyme/RbpA/CarD/Sor/AP3 - RPo class
Method: single particle / : Lilic M, Chen J, Darst SA, Campbell EA

EMDB-22578:
Mycobacterium tuberculosis BetaS456L-RNAP holoenzyme/RbpA/CarD/Sor/AP3 - PreRP2 class
Method: single particle / : Lilic M, Chen J, Darst SA, Campbell EA

EMDB-22579:
Mycobacterium tuberculosis BetaS456L-RNAP holoenzyme/RbpA/CarD/Sor/AP3 - RP2 class
Method: single particle / : Lilic M, Chen J, Darst SA, Campbell EA

EMDB-22580:
Mycobacterium tuberculosis BetaS456L-RNAP holoenzyme/RbpA/CarD/Sor/AP3 - RPo class
Method: single particle / : Lilic M, Chen J, Darst SA, Campbell EA

PDB-6vvx:
Mycobacterium tuberculosis WT RNAP transcription initiation intermediate structure with Sorangicin
Method: single particle / : Lilic M, Boyaci H, Chen J, Campbell EA, Darst SA

PDB-6vvy:
Mycobacterium tuberculosis WT RNAP transcription open promoter complex with Sorangicin
Method: single particle / : Lilic M, Boyaci H, Chen J, Darst SA, Campbell EA

PDB-6vvz:
Mycobacterium tuberculosis RNAP S456L mutant transcription initiation intermediate structure with Sorangicin
Method: single particle / : Lilic M, Boyaci H, Chen J, Darst SA, Campbell EA

PDB-6vw0:
Mycobacterium tuberculosis RNAP S456L mutant open promoter complex
Method: single particle / : Lilic M, Boyaci H, Chen J, Darst SA, Campbell EA

EMDB-9037:
Mycobacterium tuberculosis RNAP open promoter complex with RbpA/CarD and AP3 promoter
Method: single particle / : Darst SA, Campbell EA

EMDB-9039:
Mycobacterium tuberculosis RNAP promoter unwinding intermediate complex with RbpA/CarD and AP3 promoter
Method: single particle / : Darst SA, Campbell EA

EMDB-9041:
Mycobacterium tuberculosis RNAP promoter unwinding intermediate complex with RbpA/CarD and AP3 promoter captured by Corallopyronin
Method: single particle / : Darst SA, Campbell EA

EMDB-9047:
Mycobacterium tuberculosis RNAP with RbpA/us fork and Corallopyronin
Method: single particle / : Darst SA, Campbell EA

PDB-6edt:
Mycobacterium tuberculosis RNAP open promoter complex with RbpA/CarD and AP3 promoter
Method: single particle / : Darst SA, Campbell EA, Boyaci Selcuk H, Chen J

PDB-6ee8:
Mycobacterium tuberculosis RNAP promoter unwinding intermediate complex with RbpA/CarD and AP3 promoter
Method: single particle / : Darst SA, Campbell EA, Boyaci Selcuk H, Chen J

PDB-6eec:
Mycobacterium tuberculosis RNAP promoter unwinding intermediate complex with RbpA/CarD and AP3 promoter captured by Corallopyronin
Method: single particle / : Darst SA, Campbell EA, Boyaci Selcuk H, Chen J

PDB-6m7j:
Mycobacterium tuberculosis RNAP with RbpA/us fork and Corallopyronin
Method: single particle / : Darst SA, Campbell EA, Boyaci Selcuk H, Chen J

EMDB-7319:
Mtb RNAP Holo/RbpA/Fidaxomicin/upstream fork DNA
Method: single particle / : Darst SA, Campbell EA

EMDB-7320:
Mtb RNAP Holo/RbpA/double fork DNA -closed clamp
Method: single particle / : Darst SA, Campbell EA

EMDB-7322:
Mycobacterium tuberculosis RNAP Holo/RbpA in relaxed state
Method: single particle / : Darst SA, Campbell EA

EMDB-7323:
Mycobacterium tuberculosis RNAP Holo/RbpA/Fidaxomicin
Method: single particle / : Darst SA, Campbell EA

PDB-6bzo:
Mtb RNAP Holo/RbpA/Fidaxomicin/upstream fork DNA
Method: single particle / : Darst SA, Campbell EA, Boyaci Selcuk H, Chen J

PDB-6c04:
Mtb RNAP Holo/RbpA/double fork DNA -closed clamp
Method: single particle / : Darst SA, Campbell EA, Boyaci Selcuk H, Chen J, Lilic M

PDB-6c05:
Mycobacterium tuberculosis RNAP Holo/RbpA in relaxed state
Method: single particle / : Darst SA, Campbell EA, Boyaci Selcuk H, Chen J, Lilic M

PDB-6c06:
Mycobacterium tuberculosis RNAP Holo/RbpA/Fidaxomicin
Method: single particle / : Darst SA, Campbell EA, Boyaci Selcuk H, Chen J, Lilic M

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more