[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 751 items for (author: bian & y)

EMDB-55043:
CM1-activated gTuRC in complex with nascent alpha-E254D mutant microtubules
Method: single particle / : Llorca O, Serna M, Lopez-Perrote A

EMDB-55044:
CM1-activated gTuRC in complex with nascent wildtype microtubules
Method: single particle / : Llorca O, Serna M, Lopez-Perrote A

PDB-9smx:
CM1-activated gTuRC in complex with nascent alpha-E254D mutant microtubules
Method: single particle / : Llorca O, Serna M, Lopez-Perrote A

EMDB-68666:
Human 80S ribosome in complex with DHX29
Method: single particle / : Goto-Ito S, Iwasaki W, Ito T

PDB-22tu:
Human 80S ribosome in complex with DHX29
Method: single particle / : Goto-Ito S, Iwasaki W, Ito T

EMDB-53123:
Nucleotide-free wild type Wzm-Wzt from Mycobacterium abscessus in LMNG
Method: single particle / : Garaeva AA, Fabianova V, Savkova K, Huszar S, Xue X, Lowary TL, Mikusova K, Seeger MA

EMDB-53148:
ADP-bound wild type Wzm-Wzt from Mycobacterium abscessus in LMNG
Method: single particle / : Garaeva AA, Fabianova V, Savkova K, Huszar S, Xue X, Lowary TL, Mikusova K, Seeger MA

EMDB-53152:
ATP-bound wild type Wzm-Wzt from Mycobacterium abscessus in LMNG
Method: single particle / : Garaeva AA, Fabianova V, Savkova K, Huszar S, Xue X, Lowary TL, Mikusova K, Seeger MA

EMDB-53171:
ATP-bound E178Q Wzm-Wzt from Mycobacterium abscessus in LMNG
Method: single particle / : Garaeva AA, Fabianova V, Savkova K, Huszar S, Xue X, Lowary TL, Mikusova K, Seeger MA

EMDB-53172:
Nucleotide-free wild type Wzm-Wzt from Mycobacterium abscessus in nanodiscs
Method: single particle / : Garaeva AA, Fabianova V, Savkova K, Huszar S, Xue X, Lowary TL, Mikusova K, Seeger MA

EMDB-53180:
ADP-bound wild type Wzm-Wzt from Mycobacterium abscessus in nanodiscs
Method: single particle / : Garaeva AA, Fabianova V, Savkova K, Huszar S, Xue X, Lowary TL, Mikusova K, Seeger MA

EMDB-53181:
ATP-bound wild type Wzm-Wzt from Mycobacterium abscessus in nanodiscs
Method: single particle / : Garaeva AA, Fabianova V, Savkova K, Huszar S, Xue X, Lowary TL, Mikusova K, Seeger MA

EMDB-53182:
ATP-bound E178Q Wzm-Wzt from Mycobacterium abscessus in nanodiscs
Method: single particle / : Garaeva AA, Fabianova V, Savkova K, Huszar S, Xue X, Lowary TL, Mikusova K, Seeger MA

PDB-9qfx:
Nucleotide-free wild type Wzm-Wzt from Mycobacterium abscessus in LMNG
Method: single particle / : Garaeva AA, Fabianova V, Savkova K, Huszar S, Xue X, Lowary TL, Mikusova K, Seeger MA

PDB-9qgu:
ADP-bound wild type Wzm-Wzt from Mycobacterium abscessus in LMNG
Method: single particle / : Garaeva AA, Fabianova V, Savkova K, Huszar S, Xue X, Lowary TL, Mikusova K, Seeger MA

PDB-9qh1:
ATP-bound wild type Wzm-Wzt from Mycobacterium abscessus in LMNG
Method: single particle / : Garaeva AA, Fabianova V, Savkova K, Huszar S, Xue X, Lowary TL, Mikusova K, Seeger MA

PDB-9qhj:
ATP-bound E178Q Wzm-Wzt from Mycobacterium abscessus in LMNG
Method: single particle / : Garaeva AA, Fabianova V, Savkova K, Huszar S, Xue X, Lowary TL, Mikusova K, Seeger MA

PDB-9qhk:
Nucleotide-free wild type Wzm-Wzt from Mycobacterium abscessus in nanodiscs
Method: single particle / : Garaeva AA, Fabianova V, Savkova K, Huszar S, Xue X, Lowary TL, Mikusova K, Seeger MA

PDB-9qhv:
ADP-bound wild type Wzm-Wzt from Mycobacterium abscessus in nanodiscs
Method: single particle / : Garaeva AA, Fabianova V, Savkova K, Huszar S, Xue X, Lowary TL, Mikusova K, Seeger MA

PDB-9qhw:
ATP-bound wild type Wzm-Wzt from Mycobacterium abscessus in nanodiscs
Method: single particle / : Garaeva AA, Fabianova V, Savkova K, Huszar S, Xue X, Lowary TL, Mikusova K, Seeger MA

PDB-9qhx:
ATP-bound E178Q Wzm-Wzt from Mycobacterium abscessus in nanodiscs
Method: single particle / : Garaeva AA, Fabianova V, Savkova K, Huszar S, Xue X, Lowary TL, Mikusova K, Seeger MA

EMDB-48668:
Activated Leptotrichia buccalis (Lbu) CRISPR-Cas13a bound to AI-designed anti-CRISPR AIcrVIA1
Method: single particle / : Taveneau C, Knott GJ

PDB-9mvs:
Activated Leptotrichia buccalis (Lbu) CRISPR-Cas13a bound to AI-designed anti-CRISPR AIcrVIA1
Method: single particle / : Taveneau C, Knott GJ

EMDB-63979:
RABV G binding with CTB011 Fab and CTB012 Fab
Method: single particle / : Cao L, Zhang C

PDB-9ua5:
RABV G binding with CTB011 Fab and CTB012 Fab
Method: single particle / : Cao L, Zhang C

EMDB-70449:
Globular domain of monkeypox virus OPG153 (A28) bound to antibody 02M12
Method: single particle / : Rundlet EJ, Zhou L, McLellan JS

EMDB-70450:
Globular domain of monkeypox virus OPG153 (A28) in complex with antibodies 08E11 and 12I12
Method: single particle / : Zhou L, Rundlet EJ, McLellan JS

PDB-9og1:
Globular domain of monkeypox virus OPG153 (A28) bound to antibody 02M12
Method: single particle / : Rundlet EJ, Zhou L, McLellan JS

PDB-9og2:
Globular domain of monkeypox virus OPG153 (A28) in complex with antibodies 08E11 and 12I12
Method: single particle / : Zhou L, Rundlet EJ, McLellan JS

EMDB-74142:
Structure of an Engineered Sodium/Iodide Symporter (PF-NIS)
Method: single particle / : Llorente-Esteban A, Sabbineni H, Hoffsmith K, Manville RW, Lopez-Gonzalez D, Reyna-Neyra A, Leyva JA, Abbott GW, Bianchet MA, Carrasco N

PDB-9zfl:
Structure of an Engineered Sodium/Iodide Symporter (PF-NIS)
Method: single particle / : Llorente-Esteban A, Sabbineni H, Hoffsmith K, Manville RW, Lopez-Gonzalez D, Reyna-Neyra A, Leyva JA, Abbott GW, Bianchet MA, Carrasco N

EMDB-72108:
Cryo-EM Structure of HIV-1 BG505DS-SOSIP.664 Env Trimer Bound to DFPH-a.01_10R59P_LC Fab
Method: single particle / : Pletnev S, Kwong P, Fischer E

PDB-9q0w:
Cryo-EM Structure of HIV-1 BG505DS-SOSIP.664 Env Trimer Bound to DFPH-a.01_10R59P_LC Fab
Method: single particle / : Pletnev S, Kwong P

EMDB-54480:
Tomogram of unbudded yeast cell overexpressing Ldm1
Method: electron tomography / : Keller J, Diep DTV, Zhao XT, Bohnert M, Fernandez-Busnadiego R

EMDB-54483:
Tomogram of yeast cell overexpressing Ldm1, treated with alpha-factor
Method: electron tomography / : Keller J, Diep DTV, Zhao XT, Bohnert M, Fernandez-Busnadiego R

EMDB-64131:
Structure of SARS-CoV-2 spike-CD147 complex at 3.75 Angstroms resolution
Method: single particle / : Zhang SJ, Yang ZW, Lin P, Bian HJ, Zhu P, Zhang L, Chen ZN

PDB-9ug3:
Structure of SARS-CoV-2 spike-CD147 complex at 3.75 Angstroms resolution
Method: single particle / : Zhang SJ, Yang ZW, Lin P, Bian HJ, Zhu P, Zhang L, Chen ZN

EMDB-49486:
MARV GP in complex with MARV16 Fab
Method: single particle / : Addetia A, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-9njl:
MARV GP in complex with MARV16 Fab
Method: single particle / : Addetia A, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-54486:
Tomogram of yeast cell overexpressing Ldm1, treated with alpha-factor (unbudded region)
Method: electron tomography / : Keller J, Diep DTV, Zhao XT, Bohnert M, Fernandez-Busnadiego R

EMDB-54487:
Tomogram of yeast cell overexpressing Ldm1, treated with alpha-factor(bud region)
Method: electron tomography / : Keller J, Diep DTV, Zhao XT, Bohnert M, Fernandez-Busnadiego R

EMDB-54489:
Tomogram of a yeast cell treated with alpha-factor (bud region)
Method: electron tomography / : Keller J, Diep DTV, Zhao XT, Bohnert M, Fernandez-Busnadiego R

EMDB-54497:
Tomogram of a yeast cell treated with alpha-factor (bud region)
Method: electron tomography / : Keller J, Diep DTV, Zhao XT, Bohnert M, Fernandez-Busnadiego R

EMDB-47174:
Cryo-EM Structure of CRBN:dHTC1:ENL YEATS
Method: single particle / : Cheong H, Hunkeler M, Fischer ES

PDB-9dur:
Cryo-EM Structure of CRBN:dHTC1:ENL YEATS
Method: single particle / : Cheong H, Hunkeler M, Fischer ES

EMDB-49363:
Cryo-EM map of the inactive conformation of a glycoside hydrolase (CapGH2b) from the GH2 family
Method: single particle / : Martins MP, Dolce LG, Santos CR, Murakami MT

EMDB-49364:
Active conformation of a redox-regulated glycoside hydrolase (CapGH2b) from the GH2 family
Method: single particle / : Martins MP, Santos CR, Dolce LG, Murakami MT

PDB-9nfe:
Active conformation of a redox-regulated glycoside hydrolase (CapGH2b) from the GH2 family
Method: single particle / : Martins MP, Santos CR, Dolce LG, Murakami MT

EMDB-49043:
Hemagglutinin CA09 homotrimer bound to AEL31302/AEL31311 Fab
Method: single particle / : Fernandez-Quintero ML, Turner HL

EMDB-49044:
Hemagglutinin CA09 homotrimer bound to AMB38310/AMB38599 Fab
Method: single particle / : Fernandez-Quintero ML, Raghavan SSR, Gharpure A, Turner HL, Ward AB

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more