[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 2,978 items for (author: amin & m)

EMDB-75470:
Hna Monomer
Method: single particle / : Hooper M

PDB-10uj:
Hna Monomer
Method: single particle / : Hooper M

EMDB-54266:
WT-HEK 80S ribosome bound to TISU mRNA (WT-TISU)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

EMDB-54267:
RPS26dC HEK mutant 80S ribosome bound to Kozak mRNA (RPS26dC-Kozak)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

EMDB-54268:
RPS26dC HEK mutant 80S ribosome bound to TISU mRNA (RPS26dC-TISU)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

PDB-9ru8:
WT-HEK 80S ribosome bound to TISU mRNA (WT-TISU)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

PDB-9ru9:
RPS26dC HEK mutant 80S ribosome bound to Kozak mRNA (RPS26dC-Kozak)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

PDB-9rua:
RPS26dC HEK mutant 80S ribosome bound to TISU mRNA (RPS26dC-TISU)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

EMDB-54965:
Polysaccharide co-polymerase FepE open 7 subunit complex
Method: single particle / : Wiseman B, Hogbom M

EMDB-54966:
Polysaccharide co-polymerase FepE open 8 subunit complex
Method: single particle / : Wiseman B, Hogbom M

EMDB-54967:
Polysaccharide co-polymerase FepE open 9 subunit complex
Method: single particle / : Wiseman B, Hogbom M

EMDB-54968:
Polysaccharide co-polymerase FepE closed 9 subunit complex C9 symmetry
Method: single particle / : Wiseman B, Hogbom M

EMDB-54969:
Polysaccharide co-polymerase closed FepE 9 subunit complex C1 symmetry.
Method: single particle / : Wiseman B, Hogbom M

PDB-9ski:
Polysaccharide co-polymerase FepE open 7 subunit complex
Method: single particle / : Wiseman B, Hogbom M

PDB-9skj:
Polysaccharide co-polymerase FepE open 8 subunit complex
Method: single particle / : Wiseman B, Hogbom M

PDB-9skk:
Polysaccharide co-polymerase FepE open 9 subunit complex
Method: single particle / : Wiseman B, Hogbom M

PDB-9skl:
Polysaccharide co-polymerase FepE closed 9 subunit complex C9 symmetry
Method: single particle / : Wiseman B, Hogbom M

EMDB-75498:
KpSwz DUF4062 (Hexamer, catalytic mutant E97A)
Method: single particle / : Osinski A, Lopez VA, Tagliabracci VS

EMDB-75622:
KpSwz in complex with bacteriophage Bas14 Portal
Method: single particle / : Osinski A, Tagliabracci VS

EMDB-75626:
KpSwz DUF4062 (Tetramer, catalytic mutant E97A)
Method: single particle / : Osinski A, Tagliabracci VS

EMDB-75638:
Human Brain RNA Vault Shoulder bound to ADPR, focused refinement (EMPIAR-10766)
Method: single particle / : Osinski A, Tagliabracci VS

EMDB-75642:
RNA Vault waist region, focused refinement (MVP/TEP1 sample)
Method: single particle / : Osinski A, Tagliabracci VS

EMDB-75647:
RNA Vault shoulder region with BAD bound, focused refinement (MVP/TEP1 sample)
Method: single particle / : Osinski A, Tagliabracci VS

EMDB-75656:
RNA Vault with BAD bound (MVP/TEP1 sample)
Method: single particle / : Osinski A, Tagliabracci VS

EMDB-75664:
RNA Vault cap (MVP/PARP4/TEP1 sample)
Method: single particle / : Osinski A, Tagliabracci VS

EMDB-75731:
RNA Vault with ADPR bound (MVP/PARP4/TEP1 NADP sample)
Method: single particle / : Osinski A, Tagliabracci VS

EMDB-75732:
RNA Vault Shoulder with ADPR bound, compact conformation, focused refinement (MVP/PARP4/TEP1 NADP sample)
Method: single particle / : Osinski A, Tagliabracci VS

EMDB-75733:
RNA Vault Shoulder with ADPR bound, extended conformation, focused refinement (MVP/PARP4/TEP1 NADP sample)
Method: single particle / : Osinski A, Tagliabracci VS

EMDB-75735:
RNA Vault bound to PARP4 MINT, focused refinement (MVP/PARP4/TEP1 NADP sample)
Method: single particle / : Osinski A, Tagliabracci VS

EMDB-75744:
RNA Vault intermediate conformation (MVP/PARP4/TEP1 sample)
Method: single particle / : Osinski A, Tagliabracci VS

EMDB-75745:
RNA Vault extended conformation (MVP/PARP4/TEP1 sample)
Method: single particle / : Osinski A, Tagliabracci VS

PDB-10wc:
KpSwz DUF4062 (Hexamer, catalytic mutant E97A)
Method: single particle / : Osinski A, Lopez VA, Tagliabracci VS

PDB-11cq:
KpSwz in complex with bacteriophage Bas14 Portal
Method: single particle / : Osinski A, Tagliabracci VS

PDB-11cv:
KpSwz DUF4062 (Tetramer, catalytic mutant E97A)
Method: single particle / : Osinski A, Tagliabracci VS

PDB-11dr:
Human Brain RNA Vault Shoulder bound to ADPR, focused refinement (EMPIAR-10766)
Method: single particle / : Osinski A, Tagliabracci VS

PDB-11dv:
RNA Vault waist region, focused refinement (MVP/TEP1 sample)
Method: single particle / : Osinski A, Tagliabracci VS

PDB-11ee:
RNA Vault shoulder region with BAD bound, focused refinement (MVP/TEP1 sample)
Method: single particle / : Osinski A, Tagliabracci VS

PDB-11eq:
RNA Vault with BAD bound (MVP/TEP1 sample)
Method: single particle / : Osinski A, Tagliabracci VS

PDB-11fh:
RNA Vault cap (MVP/PARP4/TEP1 sample)
Method: single particle / : Osinski A, Tagliabracci VS

PDB-11jb:
RNA Vault with ADPR bound (MVP/PARP4/TEP1 NADP sample)
Method: single particle / : Osinski A, Tagliabracci VS

PDB-11jc:
RNA Vault Shoulder with ADPR bound, compact conformation, focused refinement (MVP/PARP4/TEP1 NADP sample)
Method: single particle / : Osinski A, Tagliabracci VS

PDB-11jd:
RNA Vault Shoulder with ADPR bound, extended conformation, focused refinement (MVP/PARP4/TEP1 NADP sample)
Method: single particle / : Osinski A, Tagliabracci VS

PDB-11jf:
RNA Vault bound to PARP4 MINT, focused refinement (MVP/PARP4/TEP1 NADP sample)
Method: single particle / : Osinski A, Tagliabracci VS

EMDB-54265:
WT-HEK 80S ribosome bound to Kozak mRNA (WT-Kozak)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

EMDB-54269:
WT-HEK 80S ribosome bound to H2B mRNA (WT-H2B)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

PDB-9ru7:
WT-HEK 80S ribosome bound to Kozak mRNA (WT-Kozak)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

PDB-9ruc:
WT-HEK 80S ribosome bound to H2B mRNA (WT-H2B)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

EMDB-70721:
TMPRSS2 (S441A) bound to the HCoV-NL63 S2'region genetically fused to the HCoV-HKU1 RBD
Method: single particle / : McCallum M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-70722:
TMPRSS2 S441A in complex with the H1H7 Fab and anti-kappa light chain nanobody
Method: single particle / : McCallum M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-73656:
SARS-CoV-2 spike trimer in the early fusion intermediate conformation bound to the VN01H1 Fab (Fab local refinement)
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more