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- EMDB-51018: Structure of the Native CMG-decorated gamma-Tubulin Ring Complex ... -

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Basic information

Entry
Database: EMDB / ID: EMD-51018
TitleStructure of the Native CMG-decorated gamma-Tubulin Ring Complex from Pig Brain
Map data
Sample
  • Complex: Gamma-Tubulin Ring Complex in native pig brain
    • Protein or peptide: Gamma-tubulin complex component
    • Protein or peptide: Gamma-tubulin complex component 3
    • Protein or peptide: Gamma-tubulin complex component
    • Protein or peptide: Gamma-tubulin complex component
    • Protein or peptide: Tubulin gamma complex associated protein 6
    • Protein or peptide: Mitotic spindle organizing protein 1
    • Protein or peptide: Mitotic-spindle organizing protein 2A isoform X4
    • Protein or peptide: Tubulin gamma chain
    • Protein or peptide: CDK5 regulatory subunit-associated protein 2
KeywordsTubulin Complex / STRUCTURAL PROTEIN
Function / homology
Function and homology information


Recruitment of mitotic centrosome proteins and complexes / gamma-tubulin complex localization / gamma-tubulin ring complex / polar microtubule / gamma-tubulin complex / microtubule nucleation / gamma-tubulin binding / Recruitment of NuMA to mitotic centrosomes / pericentriolar material / spindle assembly ...Recruitment of mitotic centrosome proteins and complexes / gamma-tubulin complex localization / gamma-tubulin ring complex / polar microtubule / gamma-tubulin complex / microtubule nucleation / gamma-tubulin binding / Recruitment of NuMA to mitotic centrosomes / pericentriolar material / spindle assembly / cytoplasmic microtubule / cytoplasmic microtubule organization / centriole / meiotic cell cycle / spindle microtubule / neuron migration / brain development / microtubule cytoskeleton organization / spindle / spindle pole / cell junction / mitotic cell cycle / microtubule binding / microtubule / calmodulin binding / centrosome / GTP binding / Golgi apparatus / nucleoplasm / cytosol / cytoplasm
Similarity search - Function
CDK5 regulatory subunit-associated protein 2 / MOZART2 family / Mitotic-spindle organizing gamma-tubulin ring associated / Centrosomin, N-terminal motif 1 / Centrosomin N-terminal motif 1 / Mitotic-spindle organizing protein 1 / Mitotic-spindle organizing gamma-tubulin ring associated / Gamma-tubulin complex component 6, N-terminal / Gamma-tubulin complex component 6 N-terminus / Gamma tubulin ...CDK5 regulatory subunit-associated protein 2 / MOZART2 family / Mitotic-spindle organizing gamma-tubulin ring associated / Centrosomin, N-terminal motif 1 / Centrosomin N-terminal motif 1 / Mitotic-spindle organizing protein 1 / Mitotic-spindle organizing gamma-tubulin ring associated / Gamma-tubulin complex component 6, N-terminal / Gamma-tubulin complex component 6 N-terminus / Gamma tubulin / Gamma tubulin complex component, C-terminal / Gamma-tubulin complex component, C-terminal domain superfamily / Gamma tubulin complex component C-terminal / Gamma-tubulin complex component protein / Gamma tubulin complex component protein, N-terminal / Gamma tubulin complex component N-terminal / Tubulin / Tubulin, C-terminal / Tubulin C-terminal domain / Tubulin, conserved site / Tubulin subunits alpha, beta, and gamma signature. / Tubulin/FtsZ family, C-terminal domain / Tubulin/FtsZ-like, C-terminal domain / Tubulin/FtsZ, C-terminal / Tubulin/FtsZ, 2-layer sandwich domain / Tubulin/FtsZ family, GTPase domain / Tubulin/FtsZ family, GTPase domain / Tubulin/FtsZ, GTPase domain / Tubulin/FtsZ, GTPase domain superfamily
Similarity search - Domain/homology
CDK5 regulatory subunit-associated protein 2 / Tubulin gamma chain / Mitotic spindle organizing protein 1 / Gamma-tubulin complex component / Gamma-tubulin complex component / Tubulin gamma complex component 6 / Mitotic-spindle organizing protein 2A isoform X4 / Gamma-tubulin complex component 3 / Gamma-tubulin complex component
Similarity search - Component
Biological speciesSus scrofa (pig) / Homo sapiens (human)
Methodsingle particle reconstruction / cryo EM / Resolution: 6.8 Å
AuthorsMunoz-Hernandez H / Wieczorek M
Funding support Switzerland, 2 items
OrganizationGrant numberCountry
Swiss National Science FoundationTMSGI3_211309 Switzerland
Swiss National Science Foundation310030_208120 Switzerland
CitationJournal: Dev Cell / Year: 2024
Title: Partial closure of the γ-tubulin ring complex by CDK5RAP2 activates microtubule nucleation.
Authors: Yixin Xu / Hugo Muñoz-Hernández / Rościsław Krutyhołowa / Florina Marxer / Ferdane Cetin / Michal Wieczorek /
Abstract: Microtubule nucleation is templated by the γ-tubulin ring complex (γ-TuRC), but its structure deviates from the geometry of α-/β-tubulin in the microtubule, explaining the complex's poor ...Microtubule nucleation is templated by the γ-tubulin ring complex (γ-TuRC), but its structure deviates from the geometry of α-/β-tubulin in the microtubule, explaining the complex's poor nucleating activity. Several proteins may activate the γ-TuRC, but the mechanisms underlying activation are not known. Here, we determined the structure of the porcine γ-TuRC purified using CDK5RAP2's centrosomin motif 1 (CM1). We identified an unexpected conformation of the γ-TuRC bound to multiple protein modules containing MZT2, GCP2, and CDK5RAP2, resulting in a long-range constriction of the γ-tubulin ring that brings it in closer agreement with the 13-protofilament microtubule. Additional CDK5RAP2 promoted γ-TuRC decoration and stimulated the microtubule-nucleating activities of the porcine γ-TuRC and a reconstituted, CM1-free human complex in single-molecule assays. Our results provide a structural mechanism for the control of microtubule nucleation by CM1 proteins and identify conformational transitions in the γ-TuRC that prime it for microtubule nucleation.
History
DepositionJul 12, 2024-
Header (metadata) releaseOct 2, 2024-
Map releaseOct 2, 2024-
UpdateDec 18, 2024-
Current statusDec 18, 2024Processing site: PDBe / Status: Released

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Structure visualization

Supplemental images

emd_51018.png

Downloads & links

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Map

FileDownload / File: emd_51018.map.gz / Format: CCP4 / Size: 216 MB / Type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)
Projections & slices

Image control

Size
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Others
AxesZ (Sec.)Y (Row.)X (Col.)
1.41 Å/pix.
x 384 pix.
= 542.72 Å		1.41 Å/pix.
x 384 pix.
= 542.72 Å		1.41 Å/pix.
x 384 pix.
= 542.72 Å

Surface

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Images are generated by Spider.

Voxel sizeX=Y=Z: 1.41333 Å
Density

Histogram

Histogram (log scale)
Contour LevelBy AUTHOR: 0.125
Minimum - Maximum-0.18288152 - 0.71491164
Average (Standard dev.)0.003520948 (±0.03311576)
SymmetrySpace group: 1
Details

EMDB XML:

Map geometry
Axis orderXYZ
Origin000
Dimensions384384384
Spacing384384384
CellA=B=C: 542.7199 Å
α=β=γ: 90.0 °

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Supplemental data

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Half map: #2

Fileemd_51018_half_map_1.map
Projections & Slices
AxesZYX

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Density Histograms

Histogram

Histogram (log scale)

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Half map: #1

Fileemd_51018_half_map_2.map
Projections & Slices
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Histogram (log scale)

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Sample components

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Entire : Gamma-Tubulin Ring Complex in native pig brain

EntireName: Gamma-Tubulin Ring Complex in native pig brain
Components
  • Complex: Gamma-Tubulin Ring Complex in native pig brain
    • Protein or peptide: Gamma-tubulin complex component
    • Protein or peptide: Gamma-tubulin complex component 3
    • Protein or peptide: Gamma-tubulin complex component
    • Protein or peptide: Gamma-tubulin complex component
    • Protein or peptide: Tubulin gamma complex associated protein 6
    • Protein or peptide: Mitotic spindle organizing protein 1
    • Protein or peptide: Mitotic-spindle organizing protein 2A isoform X4
    • Protein or peptide: Tubulin gamma chain
    • Protein or peptide: CDK5 regulatory subunit-associated protein 2

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Supramolecule #1: Gamma-Tubulin Ring Complex in native pig brain

SupramoleculeName: Gamma-Tubulin Ring Complex in native pig brain / type: complex / ID: 1 / Parent: 0 / Macromolecule list: all
Source (natural)Organism: Sus scrofa (pig)

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Macromolecule #1: Gamma-tubulin complex component

MacromoleculeName: Gamma-tubulin complex component / type: protein_or_peptide / ID: 1 / Number of copies: 5 / Enantiomer: LEVO
Source (natural)Organism: Sus scrofa (pig)
Molecular weightTheoretical: 102.609703 KDa
Recombinant expressionOrganism: Sus scrofa (pig)
SequenceString: MSEFRIHHDV NELLSLLRVH GGDGAEVYID LLQKNRTPYV TTTVSAHSAK VKIAEFSRTP EDFLKKYDEL KSKNTRNLDP LVYLLSKLM EDRETLQYLQ QNAKERAELA ASAAASSTAS FGASATASKI SMQELEELRK QLGSVATGPT WQQSLELTRK M LRDKQSKK ...String:
MSEFRIHHDV NELLSLLRVH GGDGAEVYID LLQKNRTPYV TTTVSAHSAK VKIAEFSRTP EDFLKKYDEL KSKNTRNLDP LVYLLSKLM EDRETLQYLQ QNAKERAELA ASAAASSTAS FGASATASKI SMQELEELRK QLGSVATGPT WQQSLELTRK M LRDKQSKK NSGQRLPVLP AWVYERPALL GDFLPGTGGS ADTAVPIGSL PLASQEAAVV EDLLYVLVGV DGRYISAQPL TG RQGRTFL VDPNLDLSIR ELVSRILPVA ASYSTVTRFI EEKSSFEYGQ VNHALAAAMR TLVKEYLVLV TQLEQLQRQG LLS LQKLWF YIQPAMRSLD ILASLATSVD KGECIGGATL SLLHDRSFSY TGDSQAQELC LHLTKAASTP YFEILEKWIY RGII DDPYS EFMVEEHELR KEKIQEDYND KYWDQRYTVV QRQIPSFLQK MAGKVLSTGK YLNVVRECGH DVTCPVAKEV VYTLK ERAY VEQIEKAFSY ASKVLLDFLM GEKELLAHLR SIKRYFLMDQ GDFFVHFMDL TEEELKKPVD DITPTRLEAL LELALR MST ANTDPFKDDL KIDLMPHDLI TQLLRVLAIE TQQEKAMVHA DPTELTLSGL EAFSFDYVVT WPLSLIINRK ALTRYQM LF RHMFYCKHVE RQLCSVWISN KAAKRFSLHS AKWFAGAFTL RQRMLNFVQN IQSYMMFEVM EPTWHVLEQN LRSASNID D VLGHHASFLD NCLKDCMLTN PELLRVFSKL MSVCVMFTNC LQRFTQSMKL DSELGHPALE PGAMLGPPTE AERAEERAR KELARKCLAE HVDAPQLASS FEATITKFDK NFSAHLLDLL ARLSIYSTSD CEHGMASVIS RLDFNGFYTE RLERLSAERS QKAAPPVPG PRGPPALVPR VAVTAQ

UniProtKB: Gamma-tubulin complex component

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Macromolecule #2: Gamma-tubulin complex component 3

MacromoleculeName: Gamma-tubulin complex component 3 / type: protein_or_peptide / ID: 2 / Number of copies: 5 / Enantiomer: LEVO
Source (natural)Organism: Sus scrofa (pig)
Molecular weightTheoretical: 103.172477 KDa
Recombinant expressionOrganism: Sus scrofa (pig)
SequenceString: MATPDQKSPN VLLQNLCCRI LGKSEADVAQ QFQYAVRVIG SNFAPTVERD EFLVAEKIKK ELTRQRREAD AALFSELHRK LHSQGVLKN KWSILYLLLS LSEDPRKQPS KVSGYAALFA QALPRDAHST PYYYARPQSL PLNYQERGAP SAQSAGSAGS S GVSSLGTY ...String:
MATPDQKSPN VLLQNLCCRI LGKSEADVAQ QFQYAVRVIG SNFAPTVERD EFLVAEKIKK ELTRQRREAD AALFSELHRK LHSQGVLKN KWSILYLLLS LSEDPRKQPS KVSGYAALFA QALPRDAHST PYYYARPQSL PLNYQERGAP SAQSAGSAGS S GVSSLGTY ALNGPTPPPP PPALLPGQPL PAPGVGDGLR QQLGSRLAWT LTASQPSLPS TTSKAVPSSG SRGAARPRRE GD AAAGAVE VTEAALVRDI LYVFQGIDGK HVKMSNADNC YTVEGKANLS KSLRDTAVRL AELGWLHNKI RKYTDQRSLD RSF GLVGQS FCAALHQELR EYYRLLSVLH SQLQLEDDQG VNLGLESSLT LRRLLVWTYD PKMRLKTLAA LVDHCQGRKG GELA SAVHA YTKTGDPYAR SLVQHILSLV SHPVLSFLYR WIYDGELEDT YHEFFVASDP AVKADRLWHD KYALRKPMIP SFMTM DQCR KVLLIGKSIN FLHQVCHDQT PTTKMIAVTK SAESPQDAAD LFTDLENAFQ GKIDAAYFET SKYLLDVLNK KYSLLD HMQ AMRRYLLLGQ GDFIRHLMDL LKPELVRPAT TLYQHNLTGI LETAVRATNA QFDSPEILKR LDVRLLEVSP GDTGWDV FS LDYHVDGPIA TVFTRECMSH YLRAFNFLWR AKRVEYILTD IRKGHMCNAR LLRSMPEFSG VLHHCHILAS EMVHFIHQ M QYYVTFEVLE CSWDELWNRV QRAQDLDHII AAHEAFLGTV ISRCLLDSDS RALLNQLRAV FDQIIELQNT QDAIYRAAL EELQRRLQFE EKKKQREAEG QWGVSAAEEE QEKRRVQEFQ ESIPKMCSQL RILTHFYQGV VQQFLVSLTT SSDESLRFLS FRLDFNEHY RAREPRLRVS LGTRGRRSSH T

UniProtKB: Gamma-tubulin complex component 3

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Macromolecule #3: Gamma-tubulin complex component

MacromoleculeName: Gamma-tubulin complex component / type: protein_or_peptide / ID: 3 / Number of copies: 2 / Enantiomer: LEVO
Source (natural)Organism: Sus scrofa (pig)
Molecular weightTheoretical: 76.104867 KDa
Recombinant expressionOrganism: Sus scrofa (pig)
SequenceString: MIHELLLALS GYPGSIFTWN KRGGLQVSQD FPFLHPSETS VLNRLCRLGT DYIRFTEFIE QYTGHVQQQD HHPSQQGQGG LHGIYLRAF CTGLDSVLQP YRQALLDLEQ EFLADPHLSI SHINYSLDQF QLLFPSVMVV VEQIKSQKIH GCQILETVYK H SCGGLPPV ...String:
MIHELLLALS GYPGSIFTWN KRGGLQVSQD FPFLHPSETS VLNRLCRLGT DYIRFTEFIE QYTGHVQQQD HHPSQQGQGG LHGIYLRAF CTGLDSVLQP YRQALLDLEQ EFLADPHLSI SHINYSLDQF QLLFPSVMVV VEQIKSQKIH GCQILETVYK H SCGGLPPV RSALEKILAV CHGVMYKQLS AWMLHGLLLD QHEEFFIKQG PSSGNVSAQP EEDEEDLGIG GLTGKQLREL QD LRLIEEE NMLAPSLKQF SLRVEILPSY IPVRVAEKIL FVGESVQMFE NQNVNLTRKG SILKDQEDTF AAELHRLKQQ PLF SLVDFE QVVDRIRSTV AEHLWKLMVE ESDLLGQLKI IKDFYLLGRG ELFQAFIDTA QHMLKTPPTA VTEHDVNVAF QQSA HKVLL DDDNLLPLLH LTIEYHGKEH KADATQAREG PSRETSPREA PASGWAALGL SYKVQWPLHI LFTPAVLEKY NVVFK YLLS VRRVQAELQH CWALQMQRKH LKSNQTDAVK WRLRNHMAFL VDNLQYYLQV DVLESQFSQL LHQINSTRDF ESIRLA HDH FLSNLLAQSF ILLKPVFHCL NEILDLCHSF CSLVSQNLGP LDERGAAQLS ILVKGFSRQS SLLFKILSSV RNHQINS DL AQLLLRLDYN KYYTQAGGTL GSFGM

UniProtKB: Gamma-tubulin complex component

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Macromolecule #4: Gamma-tubulin complex component

MacromoleculeName: Gamma-tubulin complex component / type: protein_or_peptide / ID: 4 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sus scrofa (pig)
Molecular weightTheoretical: 122.040344 KDa
Recombinant expressionOrganism: Sus scrofa (pig)
SequenceString: MASPAPSWTR LDPQQERDVR ELIRLVSGVQ DEADPNFQLA LHFAWSNFRF HRFLDVNSHK VEKTIEGIYE KFIIHSDLSK AASWKRLTD EFLNASLPSI KEIKTDAHYS ILSLLLCLSD SPSNSNYVET PRNKEVEKKD DFDWGKYLME GEEIDLGPNV D TPNWSEES ...String:
MASPAPSWTR LDPQQERDVR ELIRLVSGVQ DEADPNFQLA LHFAWSNFRF HRFLDVNSHK VEKTIEGIYE KFIIHSDLSK AASWKRLTD EFLNASLPSI KEIKTDAHYS ILSLLLCLSD SPSNSNYVET PRNKEVEKKD DFDWGKYLME GEEIDLGPNV D TPNWSEES EDEDDPQPLS REDSGIQVDR TPLEEQDQSR KPASRVSWKV DEPDARSWLE QHVVRQYWTT RSSKFPHSLH LH SNLAAVW DQHLYSSDPL YVPDDRVSVT ETQVIRETLW LLSGVKKLFI FQLIDGKVAV RNNIMVTHLT HSCLRSVLEQ IAA YGQVVF RLQEFIDEVM GHSSESTLPG NGSVPKKSTD APFRTYQAFM WALYKYFISF KEELSEIEKC IINNDTTVTL AIVV DKLSP RLAQLKVLHK VFSTGVAEVP PDTRNVVRAS HLLNTLYKAI LEYDNVGEAS EQTVSLLFSL WVETVRPYLQ IVDEW IVHG HLCDGAREFI IQRNKNVPVN HRDFWYATYT LYSVSEKTEN EEKMSDNASA SSGSDQGPSS RQHTMVSFLK PVLKQI IMA GKSMQLLKNL QCAESTTCQA MARDAERKSL YTLFLESVQS RLRHGEDATA QALTEQQATR ETLIKMQSIA ERHLELD DV HDPLLAINFA RLYLEQSDFH EKFAGGDICV DRSSESVTCQ TFELTLRSCL YPHIDKQYLD CCGNLMRTLK KDYRLVEY L QAMRNFFLME GGDTMYDFYT SIFDKIREKE TWQNVSFLNV QLQEAVGQRY PEDSSRLSIS FENTDTAKKK LPVHTLDGL TLSYKVPWPV DIVISLECQK IYNQVFLLLL QIKWAKYSLD VLLFGELASS AEKPQSKEGL LSGQDTAAQF GPQKEPVRQQ IHRMFLLRV KLMHFVNSLH NYIMTRILHS TGLEFQHQVE EAKDLDQLIK IHYRYLSTIH DRCLLREKVS FVKEAIMKVL N LALMFADG WQAGLGAWQM ESIEKMESDF KNCHMFLVTI LNKAVCRGSF PHLESLALSL MAGMEQKRED DLFNHTWGQG DL PNYTCAV RLLGVRKGGG TRPK

UniProtKB: Gamma-tubulin complex component

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Macromolecule #5: Tubulin gamma complex associated protein 6

MacromoleculeName: Tubulin gamma complex associated protein 6 / type: protein_or_peptide / ID: 5 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sus scrofa (pig)
Molecular weightTheoretical: 188.644781 KDa
Recombinant expressionOrganism: Sus scrofa (pig)
SequenceString: MASVPQLLDD LCEALLPAAK AHLGQRRGSR KRAKQSLKKV AYNALFTNLF QDEARKLQPD LPRLPVKNRI LMLSFDLRVG GLAAEADRL EELVEGLETA PRGPLAELGS VLDLLVQLAG SGPPRVLQRR RDYFLPKEHV GRNVRYGGYD CCHLSGIEAD V RSIISGEE ...String:
MASVPQLLDD LCEALLPAAK AHLGQRRGSR KRAKQSLKKV AYNALFTNLF QDEARKLQPD LPRLPVKNRI LMLSFDLRVG GLAAEADRL EELVEGLETA PRGPLAELGS VLDLLVQLAG SGPPRVLQRR RDYFLPKEHV GRNVRYGGYD CCHLSGIEAD V RSIISGEE ELCRDLIRKT LQVMEAAPGT GLPAFGLSSY GDPYGDRFER DTRVSLFGAL VHSRTADLDV RLDLPPVPDS AD VSGLAIK VPLSVDQSED EGFQSAPNLT PDSQSEPGVT PDIDLWEAVL TYEASRRRCW EQIGCPPGHR EEPYLTEAGR DAF DRFCRL RQGELQVLGG ALLQAPQPVL VKESELVKDT LNVLLGVVSA TFSLCQPAQA FTVKRGVHVS GASPESVSSL LSEV AECGT HYARLSDFSL QPVLDSSCSK GLVFQAFTSG LRRYLQYYRA CVLSTPPTLS LLTIGFLFKK LGRQLRYLAE LCGVG TALP GTGGGEPRAA FPTGVRLLSY LYQEALDNCS NEHYPVLLSL LKTSCEPYTR FIHDWVYSGV FRDVYGEFMI QVNHEY LGC RDKSYWTHGY VLVSKEVEAC VPVFLKHVAH DVYVCGKTIN LLKLCCPRHY LCCSDVPVPR ISVIFSLEEL KDIEKDC AI YVGRMERVAR HSSLSKEEKE LRMEIAKQEL IVHAREAASR VLSALSDRQM SERMALDARK REQFQRLKEQ FMRDQERR R AARQEELDDD FSYARELRDR ERRLKALEEQ LERKARQALV DHYSKLSAEA ARRERKALWR VQRHRLADAR RRFLLEEEK RVQVMPSCSW ERNQGALVFQ ASLPCPEHPD GGGGCGSGPS EQPKAARDGP RGPSRLMPQL PESPAEAACG LLSVGLSIRD FLPTAQGAE QPLHTGSALV LEEALQTIGS DLPPPAPSAA VGTGPSGPQE YDFRTILRPA VATSAFPGPL QSTGGGLGSE G QPQWEDTH VQLDMCVLDG QVALPHACSP QKTSPQEGSQ AMGQLLRQVS EGDVPTGGYA SGTAPSRPRW NVHGHVSDAS IK VGENVCD VVPSRPRWNV HGHVSDASIK VGENVCDVVP SRPRWNVHGH VSDASIKVGE NVCDVVPSRP RWNIHGHVSD ASI KVGENV CDVVPSRPRW NVHGHVSQSQ VTLGVLSGEA EPIVPWPHQT PPDHGSQSGL SLGAQSPAQE GEPQPAAETA VEGA ESGPQ ASPTAGAGSS LLSGSRLGPE ARPPPPPPHL FCPGRSEDTV DLPASCRPSS QVRGQGLGVG GESSAGCPSH PACPF MGNE GSVPGPGVDT QSSPGLGEEA AQRWGMEQAY LAGLAGQYRL EQYPDSYEAM SEPPVARLLH HGLPRAFALP EDSGVQ PDT DETAVQLSEL LPLPVLMKHS VTAPLAAHVS LVNKAAVDYF FVELHLGAHF EALRHFLLME DGEFAQSLSD LLFEKLG AG QTPGELLSPL VLNSVLSKAL QYSLHGDTPH AANLSFALKF LPEAFAPNAP DVLSCLELRY KVDWPLNIVV TEGCLSRY S GIFSFLLQLK LMMWTLKDVC FHLKRTARMS HVASSVQFRQ LQLFKHEMQH FVKVIQGYIA NQILHVTWCE FRARLASVG DLEEIQRAHA EYLHKAVFRG LLTEKAAPAM NIIHSLFSLV LKFRSQLISQ PWGLAGGPHG AEHPNFALMQ QSYSTFKYYS HFLFKVVSK LVNRGYQPHL EDFLLRINFN NYYQDA

UniProtKB: Tubulin gamma complex component 6

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Macromolecule #6: Mitotic spindle organizing protein 1

MacromoleculeName: Mitotic spindle organizing protein 1 / type: protein_or_peptide / ID: 6 / Number of copies: 3 / Enantiomer: LEVO
Source (natural)Organism: Sus scrofa (pig)
Molecular weightTheoretical: 8.285489 KDa
Recombinant expressionOrganism: Sus scrofa (pig)
SequenceString:
MAGNSGSGAA AAANLNAVRE TMDVLLEISR ILNTGLDMET LSICVRLCEQ GINPEALSSV IKELRKATEA LKAAENMTS

UniProtKB: Mitotic spindle organizing protein 1

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Macromolecule #7: Mitotic-spindle organizing protein 2A isoform X4

MacromoleculeName: Mitotic-spindle organizing protein 2A isoform X4 / type: protein_or_peptide / ID: 7 / Number of copies: 4 / Enantiomer: LEVO
Source (natural)Organism: Sus scrofa (pig)
Molecular weightTheoretical: 15.920321 KDa
Recombinant expressionOrganism: Sus scrofa (pig)
SequenceString:
MAAPGAGPGP GAPPGLEAAL QKLALRRKKV LSAEETELFE LAQAAGGAMD PEVFKILVDL LKLNVAPLAV FQMLKSMCAG QRLASEPQD PVAVPLPTTS VPETRGRNRG SSALGGGPAL AERSGREGSS QRMPRQPSAT RLPKGGGPGK SPTRST

UniProtKB: Mitotic-spindle organizing protein 2A isoform X4

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Macromolecule #8: Tubulin gamma chain

MacromoleculeName: Tubulin gamma chain / type: protein_or_peptide / ID: 8 / Number of copies: 14 / Enantiomer: LEVO
Source (natural)Organism: Sus scrofa (pig)
Molecular weightTheoretical: 51.135562 KDa
Recombinant expressionOrganism: Sus scrofa (pig)
SequenceString: MPREIITLQL GQCGNQIGFE FWKQLCAEHG ISPEGIVEEF ATEGTDRKDV FFYQADDEHY IPRAVLLDLE PRVIHSILNS PYAKLYNPE NIYLSEHGGG AGNNWASGFS QGEKIHEDIF DIIDREADGS DSLEGFVLCH SIAGGTGSGL GSYLLERLND R YPKKLVQT ...String:
MPREIITLQL GQCGNQIGFE FWKQLCAEHG ISPEGIVEEF ATEGTDRKDV FFYQADDEHY IPRAVLLDLE PRVIHSILNS PYAKLYNPE NIYLSEHGGG AGNNWASGFS QGEKIHEDIF DIIDREADGS DSLEGFVLCH SIAGGTGSGL GSYLLERLND R YPKKLVQT YSVFPNQDEM SDVVVQPYNS LLTLKRLTQN ADCVVVLDNT ALNRIATDRL HIQNPSFSQI NQLVSTIMSA ST TTLRYPG YMNNDLIGLI ASLIPTPRLH FLMTGYTPLT TDQSVASVRK TTVLDVMRRL LQPKNVMVST GRDRQTNHCY IAI LNIIQG EVDPTQVHKS LQRIRERKLA NFIPWGPASI QVALSRKSPY LPSAHRVSGL MMANHTSISS LFESSCQQYD KLRK REAFL EQFRKEDIFK ENFDELDRSR EVVQELIDEY HAATRPDYIS WGTQEQ

UniProtKB: Tubulin gamma chain

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Macromolecule #9: CDK5 regulatory subunit-associated protein 2

MacromoleculeName: CDK5 regulatory subunit-associated protein 2 / type: protein_or_peptide / ID: 9 / Number of copies: 10 / Enantiomer: LEVO
Source (natural)Organism: Homo sapiens (human)
Molecular weightTheoretical: 189.905844 KDa
Recombinant expressionOrganism: Escherichia coli (E. coli)
SequenceString: MMDLVLEEDV TVPGTLSGCS GLVPSVPDDL DGINPNAGLG NGLLPNVSEE TVSPTRARNM KDFENQITEL KKENFNLKLR IYFLEERMQ QEFHGPTEHI YKTNIELKVE VESLKRELQE REQLLIKASK AVESLAEAGG SEIQRVKEDA RKKVQQVEDL L TKRILLLE ...String:
MMDLVLEEDV TVPGTLSGCS GLVPSVPDDL DGINPNAGLG NGLLPNVSEE TVSPTRARNM KDFENQITEL KKENFNLKLR IYFLEERMQ QEFHGPTEHI YKTNIELKVE VESLKRELQE REQLLIKASK AVESLAEAGG SEIQRVKEDA RKKVQQVEDL L TKRILLLE KDVTAAQAEL EKAFAGTETE KALRLRLESK LSEMKKMHEG DLAMALVLDE KDRLIEELKL SLKSKEALIQ CL KEEKSQM ACPDENVSSG ELRGLCAAPR EEKERETEAA QMEHQKERNS FEERIQALEE DLREKEREIA TEKKNSLKRD KAI QGLTMA LKSKEKKVEE LNSEIEKLSA AFAKAREALQ KAQTQEFQGS EDYETALSGK EALSAALRSQ NLTKSTENHR LRRS IKKIT QELSDLQQER ERLEKDLEEA HREKSKGDCT IRDLRNEVEK LRNEVNEREK AMENRYKSLL SESNKKLHNQ EQVIK HLTE STNQKDVLLQ KFNEKDLEVI QQNCYLMAAE DLELRSEGLI TEKCSSQQPP GSKTIFSKEK KQSSDYEELI QVLKKE QDI YTHLVKSLQE SDSINNLQAE LNKIFALRKQ LEQDVLSYQN LRKTLEEQIS EIRRREESFS LYSDQTSYLS ICLEENN RF QVEHFSQEEL KKKVSDLIQL VKELYTDNQH LKKTIFDLSC MGFQGNGFPD RLASTEQTEE AKKSRLPILI KPSRSLGN M YRLPATQEVV TQLQSQILEL QGELKEFKTC NKQLHQKLIL AEAVMEGRPT PDKTLLNAQP PVGAAYQDSP GEQKGIKTT SSVWRDKEMD SDQQRSYEID SEICPPDDLA SLPSCKENPE DVLSPTSVAT YLSSKSQPSA KVSVMGTDQS ESINTSNETE YLKQKIHDL ETELEGYQNF IFQLQKHSQC SEAIITVLCG TEGAQDGLSK PKNGSDGEEM TFSSLHQVRY VKHVKILGPL A PEMIDSRV LENLKQQLEE QEYKLQKEQN LNMQLFSEIH NLQNKFRDLS PPRYDSLVQS QARELSLQRQ QIKDGHGICV IS RQHMNTM IKAFEELLQA SDVDYCVAEG FQEQLNQCAE LLEKLEKLFL NGKSVGVEMN TQNELMERIE EDNLTYQHLL PES PEPSAS HALSDYETSE KSFFSRDQKQ DNETEKTSVM VNSFSQDLLM EHIQEIRTLR KRLEESIKTN EKLRKQLERQ GSEF VQGST SIFASGSELH SSLTSEIHFL RKQNQALNAM LIKGSRDKQK ENDKLRESLS RKTVSLEHLQ REYASVKEEN ERLQK EGSE KERHNQQLIQ EVRCSGQELS RVQEEVKLRQ QLLSQNDKLL QSLRVELKAY EKLDEEHRRL REASGEGWKG QDPFRD LHS LLMEIQALRL QLERSIETSS TLQSRLKEQL ARGAEKAQEG ALTLAVQAVS IPEVPLQPDK HDGDKYPMES DNSFDLF DS SQAVTPKSVS ETPPLSGNDT DSLSCDSGSS ATSTPCVSRL VTGHHLWASK NGRHVLGLIE DYEALLKQIS QGQRLLAE M DIQTQEAPSS TSQELGTKGP HPAPLSKFVS SVSTAKLTLE EAYRRLKLLW RVSLPEDGQC PLHCEQIGEM KAEVTKLHK KLFEQEKKLQ NTMKLLQLSK RQEKVIFDQL VVTHKILRKA RGNLELRPGG AHPGTCSPSR PGS

UniProtKB: CDK5 regulatory subunit-associated protein 2

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Experimental details

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Structure determination

Methodcryo EM
Processingsingle particle reconstruction
Aggregation stateparticle

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Sample preparation

BufferpH: 7.5
GridModel: Quantifoil R2/1 / Material: COPPER / Support film - Material: CARBON / Support film - topology: HOLEY
VitrificationCryogen name: ETHANE-PROPANE

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Electron microscopy

MicroscopeTFS KRIOS
Image recordingFilm or detector model: GATAN K3 BIOQUANTUM (6k x 4k) / Average electron dose: 55.0 e/Å2
Electron beamAcceleration voltage: 300 kV / Electron source: FIELD EMISSION GUN
Electron opticsIllumination mode: SPOT SCAN / Imaging mode: BRIGHT FIELD / Nominal defocus max: 2.9 µm / Nominal defocus min: 0.9 µm
Experimental equipment
Model: Titan Krios / Image courtesy: FEI Company

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Image processing

Startup modelType of model: INSILICO MODEL
Final reconstructionResolution.type: BY AUTHOR / Resolution: 6.8 Å / Resolution method: FSC 0.143 CUT-OFF / Number images used: 16448
Initial angle assignmentType: MAXIMUM LIKELIHOOD
Final angle assignmentType: MAXIMUM LIKELIHOOD
FSC plot (resolution estimation)

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