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8QZG
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BU of 8qzg by Molmil
1,3 L,D-transpeptidase from Gluconobacter oxydans
Descriptor: CHLORIDE ION, SODIUM ION, YkuD domain-containing protein
Authors:ter Beek, J, Berntsson, R.P.
Deposit date:2023-10-27
Release date:2023-11-08
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:A distinctive family of L,D-transpeptidases catalyzing L-Ala-mDAP crosslinks in Alpha- and Betaproteobacteria.
Nat Commun, 15, 2024
8BSA
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BU of 8bsa by Molmil
Vc1313-LBD bound to D-arginine
Descriptor: D-ARGININE, Methyl-accepting chemotaxis protein
Authors:ter Beek, J, Berntsson, R.P.-A.
Deposit date:2022-11-24
Release date:2023-06-07
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:D-amino acids signal a stress-dependent run-away response in Vibrio cholerae.
Nat Microbiol, 8, 2023
8BSB
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BU of 8bsb by Molmil
Vc1313-LBD bound to D-lysine
Descriptor: D-LYSINE, Methyl-accepting chemotaxis protein
Authors:ter Beek, J, Berntsson, R.P.-A.
Deposit date:2022-11-24
Release date:2023-06-07
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:D-amino acids signal a stress-dependent run-away response in Vibrio cholerae.
Nat Microbiol, 8, 2023
3RLB
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BU of 3rlb by Molmil
Crystal structure at 2.0 A of the S-component for thiamin from an ECF-type ABC transporter
Descriptor: 3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-5-(2-HYDROXY-ETHYL)-4-METHYL-THIAZOL-3-IUM, ThiT, nonyl beta-D-glucopyranoside
Authors:Erkens, G.B, Berntsson, R.P.-A, Fulyani, F, Majsnerowska, M, Vujicic-Zagar, A, ter Beek, J, Poolman, B, Slotboom, D.J.
Deposit date:2011-04-19
Release date:2011-06-29
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:The structural basis of modularity in ECF-type ABC transporters.
Nat.Struct.Mol.Biol., 18, 2011
4DVE
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BU of 4dve by Molmil
Crystal structure at 2.1 A of the S-component for biotin from an ECF-type ABC transporter
Descriptor: BIOTIN, Biotin transporter BioY, nonyl beta-D-glucopyranoside
Authors:Berntsson, R.P.-A, ter Beek, J, Majsnerowska, M, Duurkens, R, Puri, P, Poolman, B, Slotboom, D.J.
Deposit date:2012-02-23
Release date:2012-08-29
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Structural divergence of paralogous S components from ECF-type ABC transporters.
Proc.Natl.Acad.Sci.USA, 109, 2012
6QIB
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BU of 6qib by Molmil
The crystal structure of Pol2CORE in complex with DNA and an incoming nucleotide, carrying an Fe-S cluster
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase epsilon catalytic subunit A, ...
Authors:Parkash, V, Johansson, E.
Deposit date:2019-01-18
Release date:2019-04-17
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural evidence for an essential Fe-S cluster in the catalytic core domain of DNA polymerase ε.
Nucleic Acids Res., 47, 2019
6H1V
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BU of 6h1v by Molmil
The crystal structure of Pol2CORE in complex with DNA and an incoming nucleotide, carrying an Fe-S cluster
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DNA (5'-D(P*AP*AP*TP*TP*GP*AP*AP*CP*GP*CP*GP*GP*TP*TP*A)-3'), DNA (5'-D(P*TP*AP*AP*CP*CP*GP*CP*GP*TP*TP*(DOC))-3'), ...
Authors:Parkash, V, Johansson, E.
Deposit date:2018-07-12
Release date:2019-04-24
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural evidence for an essential Fe-S cluster in the catalytic core domain of DNA polymerase ε.
Nucleic Acids Res., 47, 2019
8S0U
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BU of 8s0u by Molmil
Structure of the LytM domain of PrgK from E. faecalis
Descriptor: PrgK
Authors:Sun, W.-S, Berntsson, R.P.-A.
Deposit date:2024-02-14
Release date:2024-02-28
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Breaking Barriers: pCF10 Type 4 Secretion System relies on a self-regulating muramidase to modulate the cell wall
To Be Published
6I8A
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BU of 6i8a by Molmil
The crystal structure of the Pol2 catalytic domain of DNA polymerase epsilon carrying a P301R substitution.
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase epsilon catalytic subunit A, ...
Authors:Parkash, V, Johansson, E.
Deposit date:2018-11-19
Release date:2019-01-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.652 Å)
Cite:Structural consequence of the most frequently recurring cancer-associated substitution in DNA polymerase epsilon.
Nat Commun, 10, 2019
8BEG
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BU of 8beg by Molmil
Structure of Ig-like domains from PrgB
Descriptor: MAGNESIUM ION, PrgB
Authors:Jarva, M, Schmitt, A, Berntsson, R.P.-A.
Deposit date:2022-10-21
Release date:2022-11-30
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Structural foundation for the role of enterococcal PrgB in conjugation, biofilm formation, and virulence.
Elife, 12, 2023
6Z9K
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BU of 6z9k by Molmil
CAP domain of Enterococcal PrgA
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, MAGNESIUM ION, PrgA
Authors:Berntsson, R.P.A, Schmitt, A.
Deposit date:2020-06-04
Release date:2020-09-16
Last modified:2020-10-14
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Enterococcal PrgA Extends Far Outside the Cell and Provides Surface Exclusion to Protect against Unwanted Conjugation.
J.Mol.Biol., 432, 2020
6Z9L
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BU of 6z9l by Molmil
Enterococcal PrgA
Descriptor: Poly-alanine peptide, PrgA, SULFATE ION
Authors:Berntsson, R.P.A, Schmitt, A.
Deposit date:2020-06-04
Release date:2020-09-16
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.063 Å)
Cite:Enterococcal PrgA Extends Far Outside the Cell and Provides Surface Exclusion to Protect against Unwanted Conjugation.
J.Mol.Biol., 432, 2020
8A1B
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BU of 8a1b by Molmil
TraI trans-esterase domain from pKM101 (apo)
Descriptor: CHLORIDE ION, GLYCEROL, MANGANESE (II) ION, ...
Authors:Breidenstein, A, Berntsson, R.P.-A.
Deposit date:2022-06-01
Release date:2022-07-13
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural and functional characterization of TraI from pKM101 reveals basis for DNA processing.
Life Sci Alliance, 6, 2023
8A1C
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BU of 8a1c by Molmil
TraI trans-esterase domain from pKM101 (DNA bound)
Descriptor: 11mer oriT DNA, MANGANESE (II) ION, TraI
Authors:Breidenstein, A, Berntsson, R.P.-A.
Deposit date:2022-06-01
Release date:2022-07-13
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and functional characterization of TraI from pKM101 reveals basis for DNA processing.
Life Sci Alliance, 6, 2023
6FWK
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BU of 6fwk by Molmil
The crystal structure of Pol2CORE-M644G in complex with DNA and an incoming nucleotide
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(P*TP*AP*AP*CP*CP*GP*CP*GP*TP*TP*(DOC))-3'), ...
Authors:Parkash, V, Johansson, E.
Deposit date:2018-03-06
Release date:2019-01-30
Last modified:2019-02-06
Method:X-RAY DIFFRACTION (2.503 Å)
Cite:Structural consequence of the most frequently recurring cancer-associated substitution in DNA polymerase epsilon.
Nat Commun, 10, 2019
6FNP
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BU of 6fnp by Molmil
Crystal structure of ECF-CbrT, a cobalamin transporter
Descriptor: Energy-coupling factor transporter ATP-binding protein EcfA1, Energy-coupling factor transporter ATP-binding protein EcfA2, Energy-coupling factor transporter transmembrane protein EcfT, ...
Authors:Santos, J.A, Rempel, S, Guskov, A, Slotboom, D.J.
Deposit date:2018-02-05
Release date:2018-07-25
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Functional and structural characterization of an ECF-type ABC transporter for vitamin B12.
Elife, 7, 2018
6G0A
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BU of 6g0a by Molmil
The crystal structure of the Pol2 catalytic domain of DNA polymerase epsilon carrying a P301R substitution.
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(P*TP*AP*AP*CP*CP*GP*CP*GP*TP*TP*DC)-3'), ...
Authors:Parkash, V, Johansson, E.
Deposit date:2018-03-16
Release date:2019-01-30
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.62 Å)
Cite:Structural consequence of the most frequently recurring cancer-associated substitution in DNA polymerase epsilon.
Nat Commun, 10, 2019

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