Author results

3WQB
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CRYSTAL STRUCTURE OF AEROMONAS SOBRIA SERINE PROTEASE (ASP) AND THE CHAPERONE (ORF2) COMPLEX
Descriptor:Extracellular serine protease, Open reading frame 2, CALCIUM ION
Authors:Kobayashi, H., Yoshida, T., Miyakawa, T., Kato, R., Tashiro, M., Yamanaka, H., Tanokura, M., Tsuge, H.
Deposit date:2014-01-24
Release date:2015-03-25
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:Structural basis for action of the external chaperone for a propeptide-deficient serine protease from Aeromonas sobria
J.Biol.Chem., 2015
3WHO
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X-RAY-CRYSTALLOGRAPHIC STRUCTURE OF AN RNASE PO1 EXHIBITING ANTI-TUMOR ACTIVITY
Descriptor:Guanyl-specific ribonuclease Po1
Authors:Kobayashi, H., Katsurtani, T., Hara, Y., Motoyoshi, N., Itagaki, T., Akita, F., Higashiura, A., Yamada, Y., Suzuki, M., Inokuchi, N.
Deposit date:2013-08-30
Release date:2014-07-02
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:X-Ray Crystallographic Structure of RNase Po1 That Exhibits Anti-tumor Activity
Biol.Pharm.Bull., 37, 2014
5GY6
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RIBONUCLEASE FROM HERICIUM ERINACEUS (RNASE HE1)
Descriptor:Ribonuclease T1, ZINC ION
Authors:Kobayashi, H., Sangawa, T., Takebe, K., Itagaki, T., Motoyoshi, N., Suzuki, M.
Deposit date:2016-09-21
Release date:2017-09-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Ribonuclease from Hericium erinaceus (RNase He1)
To Be Published
3HJR
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CRYSTAL STRUCTURE OF SERINE PROTEASE OF AEROMONAS SOBRIA
Descriptor:Extracellular serine protease, CALCIUM ION
Authors:Utsunomiya, H., Tsuge, H., Kobayashi, H., Okamoto, K.
Deposit date:2009-05-22
Release date:2009-06-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural basis for the kexin-like serine protease from Aeromonas sobria as a sepsis-causing factor
J.Biol.Chem., 284, 2009
2MK4
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SOLUTION STRUCTURE OF ORF2
Descriptor:Open reading frame 2
Authors:Miyakawa, T., Kobayashi, H., Tashiro, M., Yamanaka, H., Tanokura, M.
Deposit date:2014-01-24
Release date:2015-03-25
Method:SOLUTION NMR
Cite:Structural basis for action of the external chaperone for a propeptide-deficient serine protease from Aeromonas sobria
J.Biol.Chem., 2015
1UAS
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CRYSTAL STRUCTURE OF RICE ALPHA-GALACTOSIDASE
Descriptor:alpha-galactosidase, ALPHA D-GALACTOSE, SULFATE ION, ...
Authors:Fujimoto, Z., Kaneko, S., Momma, M., Kobayashi, H., Mizuno, H.
Deposit date:2003-03-18
Release date:2003-07-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of rice alpha-galactosidase complexed with D-galactose
J.Biol.Chem., 278, 2003
1ISV
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CRYSTAL STRUCTURE OF XYLANASE FROM STREPTOMYCES OLIVACEOVIRIDIS E-86 COMPLEXED WITH XYLOSE
Descriptor:endo-1,4-beta-D-xylanase, BETA-D-XYLOPYRANOSE
Authors:Fujimoto, Z., Kuno, A., Kaneko, S., Kobayashi, H., Kusakabe, I., Mizuno, H.
Deposit date:2001-12-27
Release date:2002-02-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structures of the sugar complexes of Streptomyces olivaceoviridis E-86 xylanase: sugar binding structure of the family 13 carbohydrate binding module.
J.Mol.Biol., 316, 2002
1ISW
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CRYSTAL STRUCTURE OF XYLANASE FROM STREPTOMYCES OLIVACEOVIRIDIS E-86 COMPLEXED WITH XYLOBIOSE
Descriptor:endo-1,4-beta-D-xylanase, BETA-D-XYLOPYRANOSE
Authors:Fujimoto, Z., Kuno, A., Kaneko, S., Kobayashi, H., Kusakabe, I., Mizuno, H.
Deposit date:2001-12-27
Release date:2002-02-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structures of the sugar complexes of Streptomyces olivaceoviridis E-86 xylanase: sugar binding structure of the family 13 carbohydrate binding module.
J.Mol.Biol., 316, 2002
1ISX
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CRYSTAL STRUCTURE OF XYLANASE FROM STREPTOMYCES OLIVACEOVIRIDIS E-86 COMPLEXED WITH XYLOTRIOSE
Descriptor:endo-1,4-beta-D-xylanase, BETA-D-XYLOPYRANOSE
Authors:Fujimoto, Z., Kuno, A., Kaneko, S., Kobayashi, H., Kusakabe, I., Mizuno, H.
Deposit date:2001-12-27
Release date:2002-02-20
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structures of the sugar complexes of Streptomyces olivaceoviridis E-86 xylanase: sugar binding structure of the family 13 carbohydrate binding module.
J.Mol.Biol., 316, 2002
1ISY
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CRYSTAL STRUCTURE OF XYLANASE FROM STREPTOMYCES OLIVACEOVIRIDIS E-86 COMPLEXED WITH GLUCOSE
Descriptor:endo-1,4-beta-D-xylanase, BETA-D-GLUCOSE
Authors:Fujimoto, Z., Kuno, A., Kaneko, S., Kobayashi, H., Kusakabe, I., Mizuno, H.
Deposit date:2001-12-27
Release date:2002-02-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structures of the sugar complexes of Streptomyces olivaceoviridis E-86 xylanase: sugar binding structure of the family 13 carbohydrate binding module.
J.Mol.Biol., 316, 2002
1ISZ
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CRYSTAL STRUCTURE OF XYLANASE FROM STREPTOMYCES OLIVACEOVIRIDIS E-86 COMPLEXED WITH GALACTOSE
Descriptor:endo-1,4-beta-D-xylanase, BETA-D-GALACTOSE
Authors:Fujimoto, Z., Kuno, A., Kaneko, S., Kobayashi, H., Kusakabe, I., Mizuno, H.
Deposit date:2001-12-27
Release date:2002-02-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of the sugar complexes of Streptomyces olivaceoviridis E-86 xylanase: sugar binding structure of the family 13 carbohydrate binding module.
J.Mol.Biol., 316, 2002
1IT0
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CRYSTAL STRUCTURE OF XYLANASE FROM STREPTOMYCES OLIVACEOVIRIDIS E-86 COMPLEXED WITH LACTOSE
Descriptor:endo-1,4-beta-D-xylanase, BETA-LACTOSE
Authors:Fujimoto, Z., Kuno, A., Kaneko, S., Kobayashi, H., Kusakabe, I., Mizuno, H.
Deposit date:2001-12-27
Release date:2002-02-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of the sugar complexes of Streptomyces olivaceoviridis E-86 xylanase: sugar binding structure of the family 13 carbohydrate binding module.
J.Mol.Biol., 316, 2002
3A5V
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CRYSTAL STRUCTURE OF ALPHA-GALACTOSIDASE I FROM MORTIERELLA VINACEA
Descriptor:Alpha-galactosidase, ALPHA-D-MANNOSE, BETA-D-MANNOSE, ...
Authors:Fujimoto, Z., Kaneko, S., Kobayashi, H.
Deposit date:2009-08-12
Release date:2009-08-25
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Tetramer Structure of the Glycoside Hydrolase Family 27 alpha-Galactosidase I from Umbelopsis vinacea
Biosci.Biotechnol.Biochem., 73, 2009
2D1X
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THE CRYSTAL STRUCTURE OF THE CORTACTIN-SH3 DOMAIN AND AMAP1-PEPTIDE COMPLEX
Descriptor:cortactin isoform a, proline rich region from development and differentiation enhancing factor 1, SULFATE ION
Authors:Hashimoto, S., Hirose, M., Hashimoto, A., Morishige, M., Yamada, A., Hosaka, H., Akagi, K., Ogawa, E., Oneyama, C., Agatsuma, T., Okada, M., Kobayashi, H., Wada, H., Nakano, H., Ikegami, T., Nakagawa, A., Sabe, H.
Deposit date:2005-09-01
Release date:2006-04-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Targeting AMAP1 and cortactin binding bearing an atypical src homology 3/proline interface for prevention of breast cancer invasion and metastasis.
Proc.Natl.Acad.Sci.Usa, 103, 2006
1V6Y
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CRYSTAL STRUCTURE OF CHIMERIC XYLANASE BETWEEN STREPTOMYCES OLIVACEOVIRIDIS E-86 FXYN AND CELLULOMONAS FIMI CEX
Descriptor:endo-1,4-beta-D-xylanase and Endo-1,4-beta-xylanase B
Authors:Kaneko, S., Ichinose, H., Fujimoto, Z., Kuno, A., Yura, K., Go, M., Mizuno, H., Kusakabe, I., Kobayashi, H.
Deposit date:2003-12-04
Release date:2004-09-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure and function of a family 10 beta-xylanase chimera of Streptomyces olivaceoviridis E-86 FXYN and Cellulomonas fimi Cex
J.Biol.Chem., 279, 2004
1WR1
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THE COMPLEX STURCTURE OF DSK2P UBA WITH UBIQUITIN
Descriptor:Ubiquitin, Ubiquitin-like protein DSK2
Authors:Ohno, A., Jee, J.G., Fujiwara, K., Tenno, T., Goda, N., Tochio, H., Hiroaki, H., kobayashi, H., Shirakawa, M.
Deposit date:2004-10-08
Release date:2005-04-19
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of the UBA domain of Dsk2p in complex with ubiquitin molecular determinants for ubiquitin recognition.
Structure, 13, 2005
1UAW
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SOLUTION STRUCTURE OF THE N-TERMINAL RNA-BINDING DOMAIN OF MOUSE MUSASHI1
Descriptor:mouse-musashi-1
Authors:Miyanoiri, Y., Kobayashi, H., Watanabe, M., Ikeda, T., Nagata, T., Okano, H., Uesugi, S., Katahira, M.
Deposit date:2003-03-24
Release date:2004-03-24
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Origin of higher affinity to RNA of the N-terminal RNA-binding domain than that of the C-terminal one of a mouse neural protein, musashi1, as revealed by comparison of their structures, modes of interaction, surface electrostatic potentials, and backbone dynamics
J.Biol.Chem., 278, 2003
1V6U
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CRYSTAL STRUCTURE OF XYLANASE FROM STREPTOMYCES OLIVACEOVIRIDIS E-86 COMPLEXED WITH 2(2)-ALPHA-L-ARABINOFURANOSYL-XYLOBIOSE
Descriptor:endo-1,4-beta-D-xylanase, BETA-D-XYLOPYRANOSE, XYLOPYRANOSE, ...
Authors:Fujimoto, Z., Kaneko, S., Kuno, A., Kobayashi, H., Kusakabe, I., Mizuno, H.
Deposit date:2003-12-04
Release date:2004-04-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structures of decorated xylooligosaccharides bound to a family 10 xylanase from Streptomyces olivaceoviridis E-86
J.Biol.Chem., 279, 2004
1V6V
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CRYSTAL STRUCTURE OF XYLANASE FROM STREPTOMYCES OLIVACEOVIRIDIS E-86 COMPLEXED WITH 3(2)-ALPHA-L-ARABINOFURANOSYL-XYLOTRIOSE
Descriptor:ENDO-1,4-BETA-D-XYLANASE, ALPHA-L-ARABINOFURANOSE, BETA-D-XYLOPYRANOSE
Authors:Fujimoto, Z., Kaneko, S., Kuno, A., Kobayashi, H., Kusakabe, I., Mizuno, H.
Deposit date:2003-12-04
Release date:2004-04-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structures of decorated xylooligosaccharides bound to a family 10 xylanase from Streptomyces olivaceoviridis E-86
J.Biol.Chem., 279, 2004
1V6W
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CRYSTAL STRUCTURE OF XYLANASE FROM STREPTOMYCES OLIVACEOVIRIDIS E-86 COMPLEXED WITH 2(2)-4-O-METHYL-ALPHA-D-GLUCURONOSYL-XYLOBIOSE
Descriptor:ENDO-1,4-BETA-D-XYLANASE, 4-O-METHYL-ALPHA-D-GLUCURONIC ACID, BETA-D-XYLOPYRANOSE
Authors:Fujimoto, Z., Kaneko, S., Kuno, A., Kobayashi, H., Kusakabe, I., Mizuno, H.
Deposit date:2003-12-04
Release date:2004-04-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of decorated xylooligosaccharides bound to a family 10 xylanase from Streptomyces olivaceoviridis E-86
J.Biol.Chem., 279, 2004
1V6X
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CRYSTAL STRUCTURE OF XYLANASE FROM STREPTOMYCES OLIVACEOVIRIDIS E-86 COMPLEXED WITH 3(3)-4-O-METHYL-ALPHA-D-GLUCURONOSYL-XYLOTRIOSE
Descriptor:ENDO-1,4-BETA-D-XYLANASE, 4-O-METHYL-ALPHA-D-GLUCURONIC ACID, BETA-D-XYLOPYRANOSE
Authors:Fujimoto, Z., Kaneko, S., Kuno, A., Kobayashi, H., Kusakabe, I., Mizuno, H.
Deposit date:2003-12-04
Release date:2004-04-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structures of decorated xylooligosaccharides bound to a family 10 xylanase from Streptomyces olivaceoviridis E-86
J.Biol.Chem., 279, 2004
1WKR
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CRYSTAL STRUCTURE OF ASPARTIC PROTEINASE FROM IRPEX LACTEUS
Descriptor:Polyporopepsin, pepstatin, SULFATE ION
Authors:Fujimoto, Z., Fujii, Y., Kaneko, S., Kobayashi, H., Mizuno, H.
Deposit date:2004-06-02
Release date:2004-09-07
Last modified:2013-02-27
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Crystal Structure of Aspartic Proteinase from Irpex lacteus in Complex with Inhibitor Pepstatin
J.Mol.Biol., 341, 2004
3WR2
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RNASE PO1 COMPLEXED WITH 3'GMP
Descriptor:Guanyl-specific ribonuclease Po1, GUANOSINE-3'-MONOPHOSPHATE
Authors:Hara, Y., Katsutani, T., Kobayashi, H., Suzuki, M.
Deposit date:2014-02-13
Release date:2015-02-18
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:RNase Po1 complexed with 3'GMP
to be published
2D1Z
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CRYSTAL STRUCTURE OF CATALYTIC-SITE MUTANT XYLANASE FROM STREPTOMYCES OLIVACEOVIRIDIS E-86
Descriptor:ENDO-1,4-BETA-D-XYLANASE, SULFATE ION, GLYCEROL
Authors:Suzuki, R., Kuno, A., Fujimoto, Z., Ito, S., Kawahara, S.I., Kaneko, S., Hasegawa, T., Taira, K.
Deposit date:2005-09-02
Release date:2006-10-10
Last modified:2012-02-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystallographic snapshots of an entire reaction cycle for a retaining xylanase from Streptomyces olivaceoviridis E-86
J.Biochem., 146, 2009
2D20
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CRYSTAL STRUCTURE OF MICHAELIS COMPLEX OF CATALYTIC-SITE MUTANT XYLANASE FROM STREPTOMYCES OLIVACEOVIRIDIS E-86
Descriptor:ENDO-1,4-BETA-D-XYLANASE, XYLOPYRANOSE, P-NITROPHENOL, ...
Authors:Suzuki, R., Kuno, A., Fujimoto, Z., Ito, S., Kawahara, S.I., Kaneko, S., Hasegawa, T., Taira, K.
Deposit date:2005-09-02
Release date:2006-10-10
Last modified:2012-02-15
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystallographic snapshots of an entire reaction cycle for a retaining xylanase from Streptomyces olivaceoviridis E-86
J.Biochem., 146, 2009
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