1F2D | | 1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE | | Descriptor: | 1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE, SULFATE ION, PYRIDOXAL-5'-PHOSPHATE | | Authors: | Yao, M., Ose, T., Sugimoto, H., Horiuchi, A., Nakagawa, A., Yokoi, D., Murakami, T., Honma, M., Wakatsuki, S., Tanaka, I. | | Deposit date: | 2000-05-24 | | Release date: | 2000-12-20 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | Crystal structure of 1-aminocyclopropane-1-carboxylate deaminase from Hansenula saturnus.
J.Biol.Chem., 275, 2000
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1IZ6 | | CRYSTAL STRUCTURE OF TRANSLATION INITIATION FACTOR 5A FROM PYROCOCCUS HORIKOSHII | | Descriptor: | Initiation Factor 5A | | Authors: | Yao, M., Ohsawa, A., Kikukawa, S., Tanaka, I., Kimura, M. | | Deposit date: | 2002-09-25 | | Release date: | 2003-01-28 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | Crystal Structure of Hyperthermophilic Archaeal Initiation Factor 5A: A Homologue of Eukaryotic Initiation Factor 5A (eIF-5A)
J.BIOCHEM.(TOKYO), 133, 2003
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1WLS | | CRYSTAL STRUCTURE OF L-ASPARAGINASE I HOMOLOGUE PROTEIN FROM PYROCOCCUS HORIKOSHII | | Descriptor: | L-asparaginase | | Authors: | Yao, M., Morita, H., Yasutake, Y., Tanaka, I. | | Deposit date: | 2004-06-29 | | Release date: | 2005-03-15 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2.16 Å) | | Cite: | Structure of the type I L-asparaginase from the hyperthermophilic archaeon Pyrococcus horikoshii at 2.16 angstroms resolution.
Acta Crystallogr.,Sect.D, 61, 2005
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2ZQ0 | | CRYSTAL STRUCTURE OF SUSB COMPLEXED WITH ACARBOSE | | Descriptor: | Alpha-glucosidase (Alpha-glucosidase SusB), 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, CALCIUM ION | | Authors: | Yao, M., Tanaka, I., Kitamura, M. | | Deposit date: | 2008-07-31 | | Release date: | 2008-10-28 | | Last modified: | 2020-07-29 | | Method: | X-RAY DIFFRACTION (1.6 Å) | | Cite: | Structural and functional analysis of a glycoside hydrolase family 97 enzyme from Bacteroides thetaiotaomicron.
J.Biol.Chem., 283, 2008
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1V7L | |
1VGJ | | CRYSTAL STRUCTURE OF 2'-5' RNA LIGASE FROM PYROCOCCUS HORIKOSHII | | Descriptor: | Hypothetical protein PH0099 | | Authors: | Yao, M., Morita, H., Okada, A., Tanaka, I. | | Deposit date: | 2004-04-27 | | Release date: | 2005-06-07 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (1.94 Å) | | Cite: | The structure of Pyrococcus horikoshii 2'-5' RNA ligase at 1.94 A resolution reveals a possible open form with a wider active-site cleft
ACTA CRYSTALLOGR.,SECT.F, 62, 2006
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1J1F | | CRYSTAL STRUCTURE OF THE RNASE MC1 MUTANT N71T IN COMPLEX WITH 5'-GMP | | Descriptor: | RIBONUCLEASE MC1, GUANOSINE-5'-MONOPHOSPHATE | | Authors: | Numata, T., Suzuki, A., Kakuta, Y., Kimura, K., Yao, M., Tanaka, I., Yoshida, Y., Ueda, T., Kimura, M. | | Deposit date: | 2002-12-03 | | Release date: | 2003-05-20 | | Last modified: | 2017-10-04 | | Method: | X-RAY DIFFRACTION (1.6 Å) | | Cite: | Crystal Structures of the Ribonuclease MC1 Mutants N71T and N71S in Complex with 5'-GMP: Structural Basis for Alterations in Substrate Specificity
Biochemistry, 42, 2003
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1J1G | | CRYSTAL STRUCTURE OF THE RNASE MC1 MUTANT N71S IN COMPLEX WITH 5'-GMP | | Descriptor: | Ribonuclease MC1, GUANOSINE-5'-MONOPHOSPHATE | | Authors: | Numata, T., Suzuki, A., Kakuta, Y., Kimura, K., Yao, M., Tanaka, I., Yoshida, Y., Ueda, T., Kimura, M. | | Deposit date: | 2002-12-04 | | Release date: | 2003-05-20 | | Last modified: | 2017-10-04 | | Method: | X-RAY DIFFRACTION (1.6 Å) | | Cite: | Crystal Structures of the Ribonuclease MC1 Mutants N71T and N71S in Complex with 5'-GMP: Structural Basis for Alterations in Substrate Specificity
Biochemistry, 42, 2003
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1J1W | | CRYSTAL STRUCTURE OF THE MONOMERIC ISOCITRATE DEHYDROGENASE IN COMPLEX WITH NADP+ | | Descriptor: | Isocitrate Dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | | Authors: | Yasutake, Y., Watanabe, S., Yao, M., Takada, Y., Fukunaga, N., Tanaka, I. | | Deposit date: | 2002-12-19 | | Release date: | 2003-09-23 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (3.2 Å) | | Cite: | Crystal Structure of the Monomeric Isocitrate Dehydrogenase in the Presence of NADP+
J.Biol.Chem., 278, 2003
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1J0D | | ACC DEAMINASE MUTANT COMPLEXED WITH ACC | | Descriptor: | 1-aminocyclopropane-1-carboxylate deaminase, N-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-Y-LMETHYL]-1-AMINO-CYCLOPROPANECARBOXYLIC ACID | | Authors: | Ose, T., Fujino, A., Yao, M., Honma, M., Tanaka, I. | | Deposit date: | 2002-11-12 | | Release date: | 2003-05-12 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2.2 Å) | | Cite: | Reaction intermediate structures of 1-aminocyclopropane-1-carboxylate deaminase: insight into PLP-dependent cyclopropane ring-opening reaction
J.BIOL.CHEM., 278, 2003
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1J0E | | ACC DEAMINASE MUTANT REACTON INTERMEDIATE | | Descriptor: | 1-aminocyclopropane-1-carboxylate deaminase, PYRIDOXAL-5'-PHOSPHATE, 1-AMINOCYCLOPROPANECARBOXYLIC ACID | | Authors: | Ose, T., Fujino, A., Yao, M., Honma, M., Tanaka, I. | | Deposit date: | 2002-11-12 | | Release date: | 2003-05-12 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2.45 Å) | | Cite: | Reaction intermediate structures of 1-aminocyclopropane-1-carboxylate deaminase: insight into PLP-dependent cyclopropane ring-opening reaction
J.BIOL.CHEM., 278, 2003
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1UCG | | CRYSTAL STRUCTURE OF RIBONUCLEASE MC1 N71T MUTANT | | Descriptor: | Ribonuclease MC, MANGANESE (II) ION | | Authors: | Suzuki, A., Numata, T., Yao, M., Tanaka, I., Kimura, M. | | Deposit date: | 2003-04-14 | | Release date: | 2003-04-29 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (1.65 Å) | | Cite: | Crystal structures of the ribonuclease MC1 mutants N71T and N71S in complex with 5'-GMP: structural basis for alterations in substrate specificity
Biochemistry, 42, 2003
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3A8E | | THE STRUCTURE OF AXCESD OCTAMER COMPLEXED WITH CELLOPENTAOSE | | Descriptor: | Cellulose synthase operon protein D, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose | | Authors: | Hu, S.Q., Tajima, K., Zhou, Y., Yao, M., Tanaka, I. | | Deposit date: | 2009-10-05 | | Release date: | 2010-09-22 | | Last modified: | 2020-07-29 | | Method: | X-RAY DIFFRACTION (3 Å) | | Cite: | Structure of bacterial cellulose synthase subunit D octamer with four inner passageways
Proc.Natl.Acad.Sci.USA, 107, 2010
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3AJ1 | | THE STRUCTURE OF AXCESD OCTAMER (N-TERMINAL HIS-TAG) FROM ACETOBACTER XYLINUM | | Descriptor: | Cellulose synthase operon protein D | | Authors: | Hu, S.Q., Tajima, K., Zhou, Y., Tanaka, I., Yao, M. | | Deposit date: | 2010-05-20 | | Release date: | 2010-10-06 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2.5 Å) | | Cite: | Structure of bacterial cellulose synthase subunit D octamer with four inner passageways
Proc.Natl.Acad.Sci.USA, 107, 2010
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3AJ2 | | THE STRUCTURE OF AXCESD OCTAMER (C-TERMINAL HIS-TAG) FROM ACETOBACTER XYLINUM | | Descriptor: | Cellulose synthase operon protein D | | Authors: | Hu, S.Q., Tajima, K., Zhou, Y., Tanaka, I., Yao, M. | | Deposit date: | 2010-05-20 | | Release date: | 2010-10-06 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2.7 Å) | | Cite: | Structure of bacterial cellulose synthase subunit D octamer with four inner passageways
Proc.Natl.Acad.Sci.USA, 107, 2010
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1EL1 | |
1ITW | | CRYSTAL STRUCTURE OF THE MONOMERIC ISOCITRATE DEHYDROGENASE IN COMPLEX WITH ISOCITRATE AND MN | | Descriptor: | Isocitrate dehydrogenase, MANGANESE (II) ION, ISOCITRIC ACID | | Authors: | Yasutake, Y., Watanabe, S., Yao, M., Takada, Y., Fukunaga, N., Tanaka, I. | | Deposit date: | 2002-02-12 | | Release date: | 2002-12-11 | | Last modified: | 2017-10-04 | | Method: | X-RAY DIFFRACTION (1.95 Å) | | Cite: | Structure of the Monomeric Isocitrate Dehydrogenase: Evidence of a Protein Monomerization by a Domain Duplication
Structure, 10, 2002
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1GD6 | | STRUCTURE OF THE BOMBYX MORI LYSOZYME | | Descriptor: | LYSOZYME | | Authors: | Matsuura, A., Aizawa, T., Yao, M., Kawano, K., Tanaka, I., Nitta, K. | | Deposit date: | 2000-09-19 | | Release date: | 2001-03-21 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2.5 Å) | | Cite: | Structural analysis of an insect lysozyme exhibiting catalytic efficiency at low temperatures.
Biochemistry, 41, 2002
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1ION | | THE SEPTUM SITE-DETERMINING PROTEIN MIND COMPLEXED WITH MG-ADP FROM PYROCOCCUS HORIKOSHII OT3 | | Descriptor: | PROBABLE CELL DIVISION INHIBITOR MIND, MAGNESIUM ION, ADENOSINE-5'-DIPHOSPHATE | | Authors: | Sakai, N., Yao, M., Itou, H., Watanabe, N., Yumoto, F., Tanokura, M., Tanaka, I. | | Deposit date: | 2001-03-21 | | Release date: | 2001-09-26 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2.3 Å) | | Cite: | The three-dimensional structure of septum site-determining protein MinD from Pyrococcus horikoshii OT3 in complex with Mg-ADP.
Structure, 9, 2001
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1IQ4 | | 5S-RRNA BINDING RIBOSOMAL PROTEIN L5 FROM BACILLUS STEAROTHERMOPHILUS | | Descriptor: | 50S RIBOSOMAL PROTEIN L5 | | Authors: | Nakashima, T., Yao, M., Kawamura, S., Iwasaki, K., Kimura, M., Tanaka, I. | | Deposit date: | 2001-06-13 | | Release date: | 2001-06-27 | | Last modified: | 2018-11-21 | | Method: | X-RAY DIFFRACTION (1.8 Å) | | Cite: | Ribosomal protein L5 has a highly twisted concave surface and flexible arms responsible for rRNA binding.
RNA, 7, 2001
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1IQV | |
1IU8 | | THE X-RAY CRYSTAL STRUCTURE OF PYRROLIDONE-CARBOXYLATE PEPTIDASE FROM HYPERTHERMOPHILIC ARCHAEON PYROCOCCUS HORIKOSHII | | Descriptor: | Pyrrolidone-carboxylate peptidase | | Authors: | Sokabe, M., Kawamura, T., Sakai, N., Yao, M., Watanabe, N., Tanaka, I. | | Deposit date: | 2002-02-28 | | Release date: | 2002-03-20 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (1.6 Å) | | Cite: | The X-ray crystal structure of pyrrolidone-carboxylate peptidase from hyperthermophilic archaea Pyrococcus horikoshii
J.STRUCT.FUNCT.GENOM., 2, 2002
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1IZC | | CRYSTAL STRUCTURE ANALYSIS OF MACROPHOMATE SYNTHASE | | Descriptor: | macrophomate synthase intermolecular Diels-Alderase, MAGNESIUM ION, PYRUVIC ACID | | Authors: | Ose, T., Watanabe, K., Mie, T., Honma, M., Watanabe, H., Yao, M., Oikawa, H., Tanaka, I. | | Deposit date: | 2002-10-01 | | Release date: | 2003-04-01 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (1.7 Å) | | Cite: | Insight into a natural Diels-Alder reaction from the structure of macrophomate synthase.
Nature, 422, 2003
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1J0A | | CRYSTAL STRUCTURE ANALYSIS OF THE ACC DEAMINASE HOMOLOGUE | | Descriptor: | 1-aminocyclopropane-1-carboxylate deaminase, SULFATE ION, PYRIDOXAL-5'-PHOSPHATE, ... | | Authors: | Fujino, A., Ose, T., Honma, M., Yao, M., Tanaka, I. | | Deposit date: | 2002-11-12 | | Release date: | 2003-05-12 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2.5 Å) | | Cite: | Structural and enzymatic properties of 1-aminocyclopropane-1-carboxylate deaminase homologue from Pyrococcus horikoshii
J.Mol.Biol., 341, 2004
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1J0B | | CRYSTAL STRUCTURE ANALYSIS OF THE ACC DEAMINASE HOMOLOGUE COMPLEXED WITH INHIBITOR | | Descriptor: | 1-aminocyclopropane-1-carboxylate deaminase, N-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-Y-LMETHYL]-1-AMINO-CYCLOPROPANECARBOXYLIC ACID | | Authors: | Fujino, A., Ose, T., Honma, M., Yao, M., Tanaka, I. | | Deposit date: | 2002-11-12 | | Release date: | 2003-05-12 | | Last modified: | 2014-08-13 | | Method: | X-RAY DIFFRACTION (2.7 Å) | | Cite: | Structural and enzymatic properties of 1-aminocyclopropane-1-carboxylate deaminase homologue from Pyrococcus horikoshii
J.Mol.Biol., 341, 2004
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