1JWQ | | STRUCTURE OF THE CATALYTIC DOMAIN OF CWLV, N-ACETYLMURAMOYL-L-ALANINE AMIDASE FROM BACILLUS(PAENIBACILLUS) POLYMYXA VAR.COLISTINUS | | Descriptor: | N-ACETYLMURAMOYL-L-ALANINE AMIDASE CwlV, ZINC ION | | Authors: | Yamane, T., Koyama, Y., Nojiri, Y., Hikage, T., Akita, M., Suzuki, A., Shirai, T., Ise, F., Shida, T., Sekiguchi, J. | | Deposit date: | 2001-09-05 | | Release date: | 2003-11-18 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (1.8 Å) | | Cite: | The Structure of the catalytic domain of N-acetylmuramoyl-L-alanine amidase, a cell wall hydrolase from Bacillus polymyxa var.colistinus and its resemblance to the structure of carboxypeptidases
To be Published
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1MPT | | CRYSTAL STRUCTURE OF A NEW ALKALINE SERINE PROTEASE (M-PROTEASE) FROM BACILLUS SP. KSM-K16 | | Descriptor: | M-PROTEASE, CALCIUM ION | | Authors: | Yamane, T., Kani, T., Hatanaka, T., Suzuki, A., Ashida, T., Kobayashi, T., Ito, S., Yamashita, O. | | Deposit date: | 1994-04-13 | | Release date: | 1994-06-22 | | Last modified: | 2017-11-29 | | Method: | X-RAY DIFFRACTION (2.4 Å) | | Cite: | Structure of a new alkaline serine protease (M-protease) from Bacillus sp. KSM-K16.
Acta Crystallogr.,Sect.D, 51, 1995
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2Z33 | | SOLUTION STRUCTURE OF THE DNA COMPLEX OF PHOB DNA-BINDING/TRANSACTIVATION DOMAIN | | Descriptor: | 5'-D(*AP*CP*TP*GP*TP*CP*AP*TP*AP*AP*AP*TP*CP*TP*GP*T)-3', 5'-D(*AP*CP*AP*GP*AP*TP*TP*TP*AP*TP*GP*AP*CP*AP*GP*T)-3', Phosphate regulon transcriptional regulatory protein phoB | | Authors: | Yamane, T., Okamura, H., Ikeguchi, M., Nishimura, Y., Kidera, A. | | Deposit date: | 2007-05-31 | | Release date: | 2008-04-22 | | Last modified: | 2011-07-13 | | Method: | SOLUTION NMR | | Cite: | Water-mediated interactions between DNA and PhoB DNA-binding/transactivation domain: NMR-restrained molecular dynamics in explicit water environment.
Proteins, 71, 2008
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2ZE4 | | CRYSTAL STRUCTURE OF PHOSPHOLIPASE D FROM STREPTOMYCES ANTIBIOTICUS | | Descriptor: | Phospholipase D, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID | | Authors: | Suzuki, A., Kakuno, K., Saito, R., Iwasaki, Y., Yamane, T., Yamane, T. | | Deposit date: | 2007-12-05 | | Release date: | 2007-12-25 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2.5 Å) | | Cite: | Crystal structure of phospholipase D from streptomyces antibioticus
To be Published
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2ZE9 | | CRYSTAL STRUCTURE OF H168A MUTANT OF PHOSPHOLIPASE D FROM STREPTOMYCES ANTIBIOTICUS, AS A COMPLEX WITH PHOSPHATIDYLCHOLINE | | Descriptor: | Phospholipase D, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, (2R)-3-(phosphonooxy)propane-1,2-diyl diheptanoate | | Authors: | Suzuki, A., Toda, H., Iwasaki, Y., Yamane, T., Yamane, T. | | Deposit date: | 2007-12-06 | | Release date: | 2007-12-25 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2.3 Å) | | Cite: | Crystal structure of phospholipase D from streptomyces antibioticus
To be Published
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1CYC | | THE CRYSTAL STRUCTURE OF BONITO (KATSUO) FERROCYTOCHROME C AT 2.3 ANGSTROMS RESOLUTION. II. STRUCTURE AND FUNCTION | | Descriptor: | FERROCYTOCHROME C, PROTOPORPHYRIN IX CONTAINING FE | | Authors: | Tanaka, N., Yamane, T., Tsukihara, T., Ashida, T., Kakudo, M. | | Deposit date: | 1976-08-01 | | Release date: | 1976-10-06 | | Last modified: | 2017-11-29 | | Method: | X-RAY DIFFRACTION (2.3 Å) | | Cite: | The crystal structure of bonito (katsuo) ferrocytochrome c at 2.3 A resolution. II. Structure and function.
J.Biochem.(Tokyo), 77, 1975
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1J3F | | CRYSTAL STRUCTURE OF AN ARTIFICIAL METALLOPROTEIN:CR(III)(3,3'-ME2-SALOPHEN)/APO-A71G MYOGLOBIN | | Descriptor: | Myoglobin, CHROMIUM ION, PHOSPHATE ION, ... | | Authors: | Koshiyama, T., Kono, M., Ohashi, M., Ueno, T., Suzuki, A., Yamane, T., Watanabe, Y. | | Deposit date: | 2003-01-24 | | Release date: | 2004-05-18 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (1.45 Å) | | Cite: | Coordinated Design of Cofactor and Active Site Structures in Development of New Protein Catalysts
J.Am.Chem.Soc., 127, 2005
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1CH4 | | MODULE-SUBSTITUTED CHIMERA HEMOGLOBIN BETA-ALPHA (F133V) | | Descriptor: | MODULE-SUBSTITUTED CHIMERA HEMOGLOBIN BETA-ALPHA, PROTOPORPHYRIN IX CONTAINING FE, CARBON MONOXIDE | | Authors: | Shirai, T., Fujikake, M., Yamane, T., Inaba, K., Ishimori, K., Morishima, I. | | Deposit date: | 1998-06-11 | | Release date: | 1999-04-27 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2.5 Å) | | Cite: | Crystal structure of a protein with an artificial exon-shuffling, module M4-substituted chimera hemoglobin beta alpha, at 2.5 A resolution.
J.Mol.Biol., 287, 1999
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1TAB | | STRUCTURE OF THE TRYPSIN-BINDING DOMAIN OF BOWMAN-BIRK TYPE PROTEASE INHIBITOR AND ITS INTERACTION WITH TRYPSIN | | Descriptor: | TRYPSIN, BOWMAN-BIRK TYPE PROTEINASE INHIBITOR | | Authors: | Tsunogae, Y., Tanaka, I., Yamane, T., Kikkawa, J.-I., Ashida, T., Ishikawa, C., Watanabe, K., Nakamura, S., Takahashi, K. | | Deposit date: | 1990-10-15 | | Release date: | 1992-01-15 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2.3 Å) | | Cite: | Structure of the trypsin-binding domain of Bowman-Birk type protease inhibitor and its interaction with trypsin.
J.Biochem.(Tokyo), 100, 1986
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1VDP | | THE CRYSTAL STRUCTURE OF THE MONOCLINIC FORM OF HEN EGG WHITE LYSOZYME AT 1.7 ANGSTROMS RESOLUTION IN SPACE | | Descriptor: | Lysozyme C | | Authors: | Aibara, S., Suzuki, A., Kidera, A., Shibata, K., Yamane, T., DeLucas, L.J., Hirose, M. | | Deposit date: | 2004-03-24 | | Release date: | 2004-04-13 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (1.7 Å) | | Cite: | The crystal structure of the monoclinic form of hen egg white lysozyme at 1.7 angstroms resolution in space
to be published
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1VDQ | | THE CRYSTAL STRUCTURE OF THE ORTHORHOMBIC FORM OF HEN EGG WHITE LYSOZYME AT 1.5 ANGSTROMS RESOLUTION | | Descriptor: | Lysozyme C | | Authors: | Aibara, S., Suzuki, A., Kidera, A., Shibata, K., Yamane, T., DeLucas, L.J., Hirose, M. | | Deposit date: | 2004-03-24 | | Release date: | 2004-04-13 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (1.5 Å) | | Cite: | The crystal structure of the orthorhombic form of hen egg white lysozyme at 1.5 angstroms resolution
to be published
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1VDS | | THE CRYSTAL STRUCTURE OF THE TETRAGONAL FORM OF HEN EGG WHITE LYSOZYME AT 1.6 ANGSTROMS RESOLUTION IN SPACE | | Descriptor: | Lysozyme C | | Authors: | Aibara, S., Suzuki, A., Kidera, A., Shibata, K., Yamane, T., DeLucas, L.J., Hirose, M. | | Deposit date: | 2004-03-24 | | Release date: | 2004-04-13 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (1.6 Å) | | Cite: | The crystal structure of the tetragonal form of hen egg white lysozyme at 1.6 angstroms resolution in space
to be published
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1VDT | | THE CRYSTAL STRUCTURE OF THE TETRAGONAL FORM OF HEN EGG WHITE LYSOZYME AT 1.7 ANGSTROMS RESOLUTION UNDER BASIC CONDITIONS IN SPACE | | Descriptor: | Lysozyme C | | Authors: | Aibara, S., Suzuki, A., Kidera, A., Shibata, K., Yamane, T., DeLucas, L.J., Hirose, M. | | Deposit date: | 2004-03-24 | | Release date: | 2004-04-13 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (1.7 Å) | | Cite: | The crystal structure of the tetragonal form of hen egg white lysozyme at 1.7 angstroms resolution under basic conditions in space
to be published
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1VED | | THE CRYSTAL STRUCTURE OF THE ORTHORHOMBIC FORM OF HEN EGG WHITE LYSOZYME AT 1.9 ANGSTROMS RESOLUTION IN SPACE | | Descriptor: | Lysozyme C | | Authors: | Aibara, S., Suzuki, A., Kidera, A., Shibata, K., Yamane, T., DeLucas, L.J., Hirose, M. | | Deposit date: | 2004-03-30 | | Release date: | 2004-04-13 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (1.9 Å) | | Cite: | The crystal structure of the orthorhombic form of hen egg white lysozyme at 1.9 angstroms resolution in space
To be Published
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1WSD | | ALKALINE M-PROTEASE FORM I CRYSTAL STRCUTURE | | Descriptor: | M-protease, CALCIUM ION, SULFATE ION | | Authors: | Shirai, T., Suzuki, A., Yamane, T., Ashida, T., Kobayashi, T., Hitomi, J., Ito, S. | | Deposit date: | 2004-11-05 | | Release date: | 2004-11-16 | | Last modified: | 2017-10-11 | | Method: | X-RAY DIFFRACTION (1.5 Å) | | Cite: | High-resolution crystal structure of M-protease: phylogeny aided analysis of the high-alkaline adaptation mechanism
Protein Eng., 10, 1997
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2D1I | | STRUCTURE OF HUMAN ATG4B | | Descriptor: | Cysteine protease APG4B | | Authors: | Kumanomidou, T., Mizushima, T., Komatsu, M., Suzuki, A., Tanida, I., Sou, Y.S., Ueno, T., Kominami, E., Tanaka, K., Yamane, T. | | Deposit date: | 2005-08-24 | | Release date: | 2006-01-10 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | The Crystal Structure of Human Atg4b, a Processing and De-conjugating Enzyme for Autophagosome-forming Modifiers
J.Mol.Biol., 355, 2006
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2Z5B | | CRYSTAL STRUCTURE OF A NOVEL CHAPERONE COMPLEX FOR YEAST 20S PROTEASOME ASSEMBLY | | Descriptor: | Protein YPL144W, Uncharacterized protein YLR021W | | Authors: | Yashiroda, H., Mizushima, T., Okamoto, K., Kameyama, T., Hayashi, H., Kishimoto, T., Kasahara, M., Kurimoto, E., Sakata, E., Suzuki, A., Hirano, Y., Murata, S., Kato, K., Yamane, T., Tanaka, K. | | Deposit date: | 2007-07-03 | | Release date: | 2008-01-22 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (1.96 Å) | | Cite: | Crystal structure of a chaperone complex that contributes to the assembly of yeast 20S proteasomes
Nat.Struct.Mol.Biol., 15, 2008
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2Z5C | | CRYSTAL STRUCTURE OF A NOVEL CHAPERONE COMPLEX FOR YEAST 20S PROTEASOME ASSEMBLY | | Descriptor: | Protein YPL144W, Uncharacterized protein YLR021W, Proteasome component PUP2 | | Authors: | Yashiroda, H., Mizushima, T., Okamoto, K., Kameyama, T., Hayashi, H., Kishimoto, T., Kasahara, M., Kurimoto, E., Sakata, E., Suzuki, A., Hirano, Y., Murata, S., Kato, K., Yamane, T., Tanaka, K. | | Deposit date: | 2007-07-03 | | Release date: | 2008-01-22 | | Last modified: | 2017-08-09 | | Method: | X-RAY DIFFRACTION (2.9 Å) | | Cite: | Crystal structure of a chaperone complex that contributes to the assembly of yeast 20S proteasomes
Nat.Struct.Mol.Biol., 15, 2008
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2ZJD | | CRYSTAL STRUCTURE OF LC3-P62 COMPLEX | | Descriptor: | Microtubule-associated proteins 1A/1B light chain 3B precursor, undecameric peptide from Sequestosome-1 | | Authors: | Ichimura, Y., Kumanomidou, T., Sou, Y., Mizushima, T., Ezaki, J., Ueno, T., Kominami, E., Yamane, T., Tanaka, K., Komatsu, M. | | Deposit date: | 2008-03-05 | | Release date: | 2008-06-03 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (1.56 Å) | | Cite: | Structural Basis for Sorting Mechanism of p62 in Selective Autophagy
J.Biol.Chem., 283, 2008
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3A1M | | A FUSION PROTEIN OF A BETA HELIX REGION OF GENE PRODUCT 5 AND THE FOLDON REGION OF BACTERIOPHAGE T4 | | Descriptor: | chimera of thrombin cleavage site, Tail-associated lysozyme, Fibritin, ... | | Authors: | Yokoi, N., Suzuki, A., Hikage, T., Koshiyama, T., Terauchi, M., Yutani, K., Kanamaru, S., Arisaka, F., Yamane, T., Watanabe, Y., Ueno, T. | | Deposit date: | 2009-04-11 | | Release date: | 2010-04-21 | | Last modified: | 2017-06-28 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | Construction of Robust Bio-nanotubes using the Controlled Self-Assembly of Component Proteins of Bacteriophage T4
Small, 6, 2010
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3A57 | | CRYSTAL STRUCTURE OF THERMOSTABLE DIRECT HEMOLYSIN | | Descriptor: | Thermostable direct hemolysin 2 | | Authors: | Hashimoto, H., Yanagihara, I., Nakahira, K., Hamada, D., Ikegami, T., Mayanagi, K., Kaieda, S., Fukui, T., Ohnishi, K., Kajiyama, S., Yamane, T., Ikeguchi, M., Honda, T., Shimizu, T., Sato, M. | | Deposit date: | 2009-08-03 | | Release date: | 2010-03-31 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (1.5 Å) | | Cite: | Structure and functional characterization of Vibrio parahaemolyticus thermostable direct hemolysin
J.Biol.Chem., 285, 2010
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3WSO | | CRYSTAL STRUCTURE OF THE SKP1-FBG3 COMPLEX | | Descriptor: | F-box only protein 44, S-phase kinase-associated protein 1 | | Authors: | Kumanomidou, T., Nishio, K., Takagi, K., Nakagawa, T., Suzuki, A., Yamane, T., Tokunaga, F., Iwai, K., Murakami, A., Yoshida, Y., Tanaka, K., Mizushima, T. | | Deposit date: | 2014-03-18 | | Release date: | 2015-03-25 | | Last modified: | 2015-11-11 | | Method: | X-RAY DIFFRACTION (2.6 Å) | | Cite: | The Structural Differences between a Glycoprotein Specific F-Box Protein Fbs1 and Its Homologous Protein FBG3
Plos One, 10, 2015
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1C1F | | LIGAND-FREE CONGERIN I | | Descriptor: | PROTEIN (CONGERIN I) | | Authors: | Shirai, T., Mitsuyama, C., Niwa, Y., Matsui, Y., Hotta, H., Yamane, T., Kamiya, H., Ishii, C., Ogawa, T., Muramoto, K. | | Deposit date: | 1999-03-03 | | Release date: | 1999-10-08 | | Last modified: | 2016-04-20 | | Method: | X-RAY DIFFRACTION (1.6 Å) | | Cite: | High-resolution structure of the conger eel galectin, congerin I, in lactose-liganded and ligand-free forms: emergence of a new structure class by accelerated evolution.
Structure Fold.Des., 7, 1999
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1C1L | | LACTOSE-LIGANDED CONGERIN I | | Descriptor: | PROTEIN (CONGERIN I), BETA-D-GALACTOSE, BETA-D-GLUCOSE | | Authors: | Shirai, T., Mitsuyama, C., Niwa, Y., Matsui, Y., Hotta, H., Yamane, T., Kamiya, H., Ishii, C., Ogawa, T., Muramoto, K. | | Deposit date: | 1999-03-03 | | Release date: | 1999-10-08 | | Last modified: | 2016-04-20 | | Method: | X-RAY DIFFRACTION (1.5 Å) | | Cite: | High-resolution structure of the conger eel galectin, congerin I, in lactose-liganded and ligand-free forms: emergence of a new structure class by accelerated evolution.
Structure Fold.Des., 7, 1999
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1IS3 | | LACTOSE AND MES-LIGANDED CONGERIN II | | Descriptor: | CONGERIN II, BETA-LACTOSE, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID | | Authors: | Shirai, T., Matsui, Y., Shionyu-Mitsuyama, C., Yamane, T., Kamiya, H., Ishii, C., Ogawa, T., Muramoto, K. | | Deposit date: | 2001-11-12 | | Release date: | 2002-09-18 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (1.45 Å) | | Cite: | Crystal structure of a conger eel galectin (congerin II) at 1.45 A resolution: Implication for the accelerated evolution of a new ligand-binding site following gene duplication
J.MOL.BIOL., 321, 2002
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