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1MPT
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BU of 1mpt by Molmil
CRYSTAL STRUCTURE OF A NEW ALKALINE SERINE PROTEASE (M-PROTEASE) FROM BACILLUS SP. KSM-K16
Descriptor: CALCIUM ION, M-PROTEASE
Authors:Yamane, T, Kani, T, Hatanaka, T, Suzuki, A, Ashida, T, Kobayashi, T, Ito, S, Yamashita, O.
Deposit date:1994-04-13
Release date:1994-06-22
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of a new alkaline serine protease (M-protease) from Bacillus sp. KSM-K16.
Acta Crystallogr.,Sect.D, 51, 1995
1JWQ
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BU of 1jwq by Molmil
Structure of the catalytic domain of CwlV, N-acetylmuramoyl-L-alanine amidase from Bacillus(Paenibacillus) polymyxa var.colistinus
Descriptor: N-ACETYLMURAMOYL-L-ALANINE AMIDASE CwlV, ZINC ION
Authors:Yamane, T, Koyama, Y, Nojiri, Y, Hikage, T, Akita, M, Suzuki, A, Shirai, T, Ise, F, Shida, T, Sekiguchi, J.
Deposit date:2001-09-05
Release date:2003-11-18
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Structure of the catalytic domain of N-acetylmuramoyl-L-alanine amidase, a cell wall hydrolase from Bacillus polymyxa var.colistinus and its resemblance to the structure of carboxypeptidases
To be Published
2Z33
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BU of 2z33 by Molmil
Solution structure of the DNA complex of PhoB DNA-binding/transactivation Domain
Descriptor: 5'-D(*AP*CP*AP*GP*AP*TP*TP*TP*AP*TP*GP*AP*CP*AP*GP*T)-3', 5'-D(*AP*CP*TP*GP*TP*CP*AP*TP*AP*AP*AP*TP*CP*TP*GP*T)-3', Phosphate regulon transcriptional regulatory protein phoB
Authors:Yamane, T, Okamura, H, Ikeguchi, M, Nishimura, Y, Kidera, A.
Deposit date:2007-05-31
Release date:2008-04-22
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Water-mediated interactions between DNA and PhoB DNA-binding/transactivation domain: NMR-restrained molecular dynamics in explicit water environment.
Proteins, 71, 2008
1TAB
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BU of 1tab by Molmil
STRUCTURE OF THE TRYPSIN-BINDING DOMAIN OF BOWMAN-BIRK TYPE PROTEASE INHIBITOR AND ITS INTERACTION WITH TRYPSIN
Descriptor: BOWMAN-BIRK TYPE PROTEINASE INHIBITOR, TRYPSIN
Authors:Tsunogae, Y, Tanaka, I, Yamane, T, Kikkawa, J.-I, Ashida, T, Ishikawa, C, Watanabe, K, Nakamura, S, Takahashi, K.
Deposit date:1990-10-15
Release date:1992-01-15
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of the trypsin-binding domain of Bowman-Birk type protease inhibitor and its interaction with trypsin.
J.Biochem.(Tokyo), 100, 1986
1UFP
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BU of 1ufp by Molmil
Crystal Structure of an Artificial Metalloprotein:Fe(III)(3,3'-Me2-salophen)/apo-wild type Myoglobin
Descriptor: Myoglobin, PHOSPHATE ION
Authors:Ueno, T, Ohashi, M, Kono, M, Kondo, K, Suzuki, A, Yamane, T, Watanabe, Y.
Deposit date:2003-06-04
Release date:2004-05-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of Artificial Metalloproteins: Tight Binding of Fe(III)(Schiff-Base) by Mutation of Ala71 to Gly in Apo-Myoglobin
Inorg.Chem., 43, 2004
3DXW
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BU of 3dxw by Molmil
The crystal structure of alpha-amino-epsilon-caprolactam racemase from Achromobacter obae complexed with epsilon caprolactam
Descriptor: Alpha-amino-epsilon-caprolactam racemase, PYRIDOXAL-5'-PHOSPHATE, azepan-2-one
Authors:Okazaki, S, Suzuki, A, Komeda, H, Asano, Y, Yamane, T.
Deposit date:2008-07-25
Release date:2009-07-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:The novel structure of a pyridoxal 5'-phosphate-dependent fold-type I racemase, alpha-amino-epsilon-caprolactam racemase from Achromobacter obae
Biochemistry, 48, 2009
1UFJ
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BU of 1ufj by Molmil
Crystal Structure of an Artificial Metalloprotein:Fe(III)(3,3'-Me2-salophen)/apo-A71G Myoglobin
Descriptor: 'N,N'-BIS-(2-HYDROXY-3-METHYL-BENZYLIDENE)-BENZENE-1,2-DIAMINE', FE (III) ION, MYOGLOBIN, ...
Authors:Ueno, T, Ohashi, M, Kono, M, Kondo, K, Suzuki, A, Yamane, T, Watanabe, Y.
Deposit date:2003-05-30
Release date:2004-05-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structures of Artificial Metalloproteins: Tight Binding of Fe(III)(Schiff-Base) by Mutation of Ala71 to Gly in Apo-Myoglobin
Inorg.Chem., 43, 2004
3DXV
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BU of 3dxv by Molmil
The crystal structure of alpha-amino-epsilon-caprolactam racemase from Achromobacter obae
Descriptor: Alpha-amino-epsilon-caprolactam racemase, PYRIDOXAL-5'-PHOSPHATE
Authors:Okazaki, S, Suzuki, A, Komeda, H, Asano, Y, Yamane, T.
Deposit date:2008-07-25
Release date:2009-02-17
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:The novel structure of a pyridoxal 5'-phosphate-dependent fold-type I racemase, alpha-amino-epsilon-caprolactam racemase from Achromobacter obae
Biochemistry, 48, 2009
3WSO
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BU of 3wso by Molmil
Crystal structure of the Skp1-FBG3 complex
Descriptor: F-box only protein 44, S-phase kinase-associated protein 1
Authors:Kumanomidou, T, Nishio, K, Takagi, K, Nakagawa, T, Suzuki, A, Yamane, T, Tokunaga, F, Iwai, K, Murakami, A, Yoshida, Y, Tanaka, K, Mizushima, T.
Deposit date:2014-03-18
Release date:2015-03-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The Structural Differences between a Glycoprotein Specific F-Box Protein Fbs1 and Its Homologous Protein FBG3
Plos One, 10, 2015
3X3H
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BU of 3x3h by Molmil
Crystal Structure of the Manihot esculenta Hydroxynitrile Lyase (MeHNL) 3KP (K176P, K199P, K224P) triple mutant
Descriptor: (S)-hydroxynitrile lyase
Authors:Cielo, C.B.C, Yamane, T, Asano, Y, Dadashipour, M, Suzuki, A, Mizushima, T, Komeda, H, Okazaki, S.
Deposit date:2015-01-21
Release date:2016-03-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.88 Å)
Cite:Crystallographic Studies of Manihot esculenta hydroxynitrile lyase Lysine-to-Proline mutants
TO BE PUBLISHED
1C1F
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BU of 1c1f by Molmil
LIGAND-FREE CONGERIN I
Descriptor: PROTEIN (CONGERIN I)
Authors:Shirai, T, Mitsuyama, C, Niwa, Y, Matsui, Y, Hotta, H, Yamane, T, Kamiya, H, Ishii, C, Ogawa, T, Muramoto, K.
Deposit date:1999-03-03
Release date:1999-10-08
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:High-resolution structure of the conger eel galectin, congerin I, in lactose-liganded and ligand-free forms: emergence of a new structure class by accelerated evolution.
Structure Fold.Des., 7, 1999
1C1L
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BU of 1c1l by Molmil
LACTOSE-LIGANDED CONGERIN I
Descriptor: PROTEIN (CONGERIN I), beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
Authors:Shirai, T, Mitsuyama, C, Niwa, Y, Matsui, Y, Hotta, H, Yamane, T, Kamiya, H, Ishii, C, Ogawa, T, Muramoto, K.
Deposit date:1999-03-03
Release date:1999-10-08
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:High-resolution structure of the conger eel galectin, congerin I, in lactose-liganded and ligand-free forms: emergence of a new structure class by accelerated evolution.
Structure Fold.Des., 7, 1999
1CYC
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BU of 1cyc by Molmil
THE CRYSTAL STRUCTURE OF BONITO (KATSUO) FERROCYTOCHROME C AT 2.3 ANGSTROMS RESOLUTION. II. STRUCTURE AND FUNCTION
Descriptor: FERROCYTOCHROME C, HEME C
Authors:Tanaka, N, Yamane, T, Tsukihara, T, Ashida, T, Kakudo, M.
Deposit date:1976-08-01
Release date:1976-10-06
Last modified:2024-12-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The crystal structure of bonito (katsuo) ferrocytochrome c at 2.3 A resolution. II. Structure and function.
J.Biochem.(Tokyo), 77, 1975
2RJ2
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BU of 2rj2 by Molmil
Crystal Structure of the Sugar Recognizing SCF Ubiquitin Ligase at 1.7 Resolution
Descriptor: CHLORIDE ION, F-box only protein 2, NICKEL (II) ION
Authors:Vaijayanthimala, S, Velmurugan, D, Mizushima, T, Yamane, T, Yoshida, Y, Tanaka, K.
Deposit date:2007-10-14
Release date:2008-10-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structure of the Sugar Recognizing SCF Ubiquitin Ligase at 1.7 Resolution
To be Published
2RPQ
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BU of 2rpq by Molmil
Solution Structure of a SUMO-interacting motif of MBD1-containing chromatin-associated factor 1 bound to SUMO-3
Descriptor: Activating transcription factor 7-interacting protein 1, Small ubiquitin-related modifier 2
Authors:Sekiyama, N, Ikegami, T, Yamane, T, Ikeguchi, M, Uchimura, Y, Baba, D, Ariyoshi, M, Tochio, H, Saitoh, H, Shirakawa, M.
Deposit date:2008-07-07
Release date:2008-10-07
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structure of the small ubiquitin-like modifier (SUMO)-interacting motif of MBD1-containing chromatin-associated factor 1 bound to SUMO-3
J.Biol.Chem., 283, 2008
2RVQ
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BU of 2rvq by Molmil
Solution structure of the isolated histone H2A-H2B heterodimer
Descriptor: Histone H2A type 1-B/E, Histone H2B type 1-J
Authors:Moriwaki, Y, Yamane, T, Ohtomo, H, Ikeguchi, M, Kurita, J, Sato, M, Nagadoi, A, Shimojo, H, Nishimura, Y.
Deposit date:2016-03-28
Release date:2016-05-25
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution structure of the isolated histone H2A-H2B heterodimer
Sci Rep, 6, 2016
2D1I
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BU of 2d1i by Molmil
Structure of human Atg4b
Descriptor: Cysteine protease APG4B
Authors:Kumanomidou, T, Mizushima, T, Komatsu, M, Suzuki, A, Tanida, I, Sou, Y.S, Ueno, T, Kominami, E, Tanaka, K, Yamane, T.
Deposit date:2005-08-24
Release date:2006-01-10
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Crystal Structure of Human Atg4b, a Processing and De-conjugating Enzyme for Autophagosome-forming Modifiers
J.Mol.Biol., 355, 2006
1CH4
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BU of 1ch4 by Molmil
MODULE-SUBSTITUTED CHIMERA HEMOGLOBIN BETA-ALPHA (F133V)
Descriptor: CARBON MONOXIDE, MODULE-SUBSTITUTED CHIMERA HEMOGLOBIN BETA-ALPHA, PROTOPORPHYRIN IX CONTAINING FE
Authors:Shirai, T, Fujikake, M, Yamane, T, Inaba, K, Ishimori, K, Morishima, I.
Deposit date:1998-06-11
Release date:1999-04-27
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of a protein with an artificial exon-shuffling, module M4-substituted chimera hemoglobin beta alpha, at 2.5 A resolution.
J.Mol.Biol., 287, 1999
3HJE
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BU of 3hje by Molmil
Crystal structure of sulfolobus tokodaii hypothetical maltooligosyl trehalose synthase
Descriptor: 704aa long hypothetical glycosyltransferase, GLYCEROL
Authors:Cielo, C.B.C, Okazaki, S, Suzuki, A, Mizushima, T, Masui, R, Kuramitsu, S, Yamane, T.
Deposit date:2009-05-21
Release date:2010-04-14
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of ST0929, a putative glycosyl transferase from Sulfolobus tokodaii
Acta Crystallogr.,Sect.F, 66, 2010
1Z99
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BU of 1z99 by Molmil
Solution structure of Crotamine, a myotoxin from Crotalus durissus terrificus
Descriptor: Crotamine
Authors:Fadel, V, Bettendorff, P, Herrmann, T, de Azevedo, W.F, Oliveira, E.B, Yamane, T, Wuthrich, K.
Deposit date:2005-04-01
Release date:2006-03-14
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Automated NMR structure determination and disulfide bond identification of the myotoxin crotamine from Crotalus durissus terrificus.
Toxicon, 46, 2005
2B9U
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BU of 2b9u by Molmil
Crystal structure of dTDP-4-dehydrorhamnose 3,5-epimerase from sulfolobus tokodaii
Descriptor: hypothetical dTDP-4-dehydrorhamnose 3,5-epimerase
Authors:Rajakannan, V, Kondo, K, Mizushima, T, Suzuki, A, Yamane, T.
Deposit date:2005-10-13
Release date:2006-10-13
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Crystal structure of dTDP-4-dehydrorhamnose 3,5-epimerase from sulfolobus tokodaii
TO BE PUBLISHED
1J3F
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BU of 1j3f by Molmil
Crystal Structure of an Artificial Metalloprotein:Cr(III)(3,3'-Me2-salophen)/apo-A71G Myoglobin
Descriptor: 'N,N'-BIS-(2-HYDROXY-3-METHYL-BENZYLIDENE)-BENZENE-1,2-DIAMINE', CHROMIUM ION, Myoglobin, ...
Authors:Koshiyama, T, Kono, M, Ohashi, M, Ueno, T, Suzuki, A, Yamane, T, Watanabe, Y.
Deposit date:2003-01-24
Release date:2004-05-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Coordinated Design of Cofactor and Active Site Structures in Development of New Protein Catalysts
J.Am.Chem.Soc., 127, 2005
2B96
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BU of 2b96 by Molmil
Third Calcium ion found in an inhibitor bound phospholipase A2
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 4-METHOXYBENZOIC ACID, CALCIUM ION, ...
Authors:Sekar, K, Velmurugan, D, Yamane, T, Tsai, M.D.
Deposit date:2005-10-11
Release date:2006-03-28
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Third Calcium ion found in an inhibitor bound phospholipase A2
Acta Crystallogr.,Sect.D, 62, 2006
2ZE4
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BU of 2ze4 by Molmil
Crystal structure of phospholipase D from streptomyces antibioticus
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Phospholipase D
Authors:Suzuki, A, Kakuno, K, Saito, R, Iwasaki, Y, Yamane, T, Yamane, T.
Deposit date:2007-12-05
Release date:2007-12-25
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of phospholipase D from streptomyces antibioticus
To be Published
2ZE9
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BU of 2ze9 by Molmil
Crystal structure of H168A mutant of phospholipase D from Streptomyces antibioticus, as a complex with phosphatidylcholine
Descriptor: (2R)-3-(phosphonooxy)propane-1,2-diyl diheptanoate, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Phospholipase D
Authors:Suzuki, A, Toda, H, Iwasaki, Y, Yamane, T, Yamane, T.
Deposit date:2007-12-06
Release date:2007-12-25
Last modified:2025-04-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of phospholipase D from streptomyces antibioticus.
To be Published

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