Author results

5AZZ
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CRYSTAL STRUCTURE OF SELENO-INSULIN
Descriptor:Insulin A chain, Insulin B chain
Authors:Watanabe, S., Okumura, M., Arai, K., Takei, T., Asahina, Y., Hojo, H., Iwaoka, M., Inaba, K.
Deposit date:2015-10-23
Release date:2017-05-03
Last modified:2017-06-14
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Preparation of Selenoinsulin as a Long-Lasting Insulin Analogue.
Angew. Chem. Int. Ed. Engl., 56, 2017
6JNJ
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CRYSTAL STRUCTURE OF AZOSPIRILLUM BRASILENSE L-ARABINOSE 1-DEHYDROGENASE (APO-FORM)
Descriptor:L-arabinose 1-dehydrogenase (NAD(P)(+)), PHOSPHATE ION
Authors:Watanabe, Y., Iga, C., Watanabe, S.
Deposit date:2019-03-16
Release date:2019-05-15
Last modified:2019-06-26
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural insights into the catalytic and substrate recognition mechanisms of bacterial l-arabinose 1-dehydrogenase.
Febs Lett., 593, 2019
3WJP
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CRYSTAL STRUCTURE OF THE HYPE CA FORM
Descriptor:Hydrogenase expression/formation protein HypE, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, MAGNESIUM ION, ...
Authors:Tominaga, T., Watanabe, S., Miki, K.
Deposit date:2013-10-14
Release date:2013-12-18
Last modified:2014-01-22
Method:X-RAY DIFFRACTION (1.533 Å)
Cite:Crystal structures of the carbamoylated and cyanated forms of HypE for [NiFe] hydrogenase maturation
Proc.Natl.Acad.Sci.USA, 110, 2013
2Z1E
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CRYSTAL STRUCTURE OF HYPE FROM THERMOCOCCUS KODAKARAENSIS (OUTWARD FORM)
Descriptor:Hydrogenase expression/formation protein HypE
Authors:Watanabe, S., Matsumi, R., Arai, T., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2007-05-08
Release date:2007-07-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling
Mol.Cell, 27, 2007
5AUN
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CRYSTAL STRUCTURE OF THE HYPAB-NI COMPLEX
Descriptor:Probable hydrogenase nickel incorporation protein HypA, ATPase involved in chromosome partitioning, ParA/MinD family, ...
Authors:Watanabe, S., Kawashima, T., Nishitani, Y., Miki, K.
Deposit date:2015-05-27
Release date:2015-06-24
Last modified:2015-07-08
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Structural basis of a Ni acquisition cycle for [NiFe] hydrogenase by Ni-metallochaperone HypA and its enhancer
Proc.Natl.Acad.Sci.USA, 112, 2015
3WJQ
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CRYSTAL STRUCTURE OF THE HYPE CN FORM
Descriptor:Hydrogenase expression/formation protein HypE, MAGNESIUM ION, BENZAMIDINE, ...
Authors:Tominaga, T., Watanabe, S., Miki, K.
Deposit date:2013-10-14
Release date:2013-12-18
Last modified:2014-01-22
Method:X-RAY DIFFRACTION (1.645 Å)
Cite:Crystal structures of the carbamoylated and cyanated forms of HypE for [NiFe] hydrogenase maturation
Proc.Natl.Acad.Sci.USA, 110, 2013
2D2E
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CRYSTAL STRUCTURE OF ATYPICAL CYTOPLASMIC ABC-ATPASE SUFC FROM THERMUS THERMOPHILUS HB8
Descriptor:SufC protein, CHLORIDE ION, GLYCEROL
Authors:Watanabe, S., Kita, A., Miki, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-09-08
Release date:2005-10-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structure of Atypical Cytoplasmic ABC-ATPase SufC from Thermus thermophilus HB8.
J.Mol.Biol., 353, 2005
2Z1F
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CRYSTAL STRUCTURE OF HYPE FROM THERMOCOCCUS KODAKARAENSIS (INWARD FORM)
Descriptor:Hydrogenase expression/formation protein HypE
Authors:Watanabe, S., Matsumi, R., Arai, T., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2007-05-08
Release date:2007-07-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling
Mol.Cell, 27, 2007
2Z1C
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CRYSTAL STRUCTURE OF HYPC FROM THERMOCOCCUS KODAKARAENSIS KOD1
Descriptor:Hydrogenase expression/formation protein HypC, GLYCEROL, TETRAETHYLENE GLYCOL
Authors:Watanabe, S., Matsumi, R., Arai, T., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2007-05-08
Release date:2007-07-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling
Mol.Cell, 27, 2007
5AUO
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CRYSTAL STRUCTURE OF THE HYPAB-NI COMPLEX (AMPPCP)
Descriptor:Probable hydrogenase nickel incorporation protein HypA, ATPase involved in chromosome partitioning, ParA/MinD family, ...
Authors:Watanabe, S., Kawashima, T., Nishitani, Y., Miki, K.
Deposit date:2015-05-27
Release date:2015-06-24
Last modified:2015-07-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis of a Ni acquisition cycle for [NiFe] hydrogenase by Ni-metallochaperone HypA and its enhancer
Proc.Natl.Acad.Sci.USA, 112, 2015
3FKR
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STRUCTURE OF L-2-KETO-3-DEOXYARABONATE DEHYDRATASE COMPLEX WITH PYRUVATE
Descriptor:L-2-keto-3-deoxyarabonate dehydratase, PHOSPHATE ION, SODIUM ION
Authors:Shimada, N., Mikami, B.
Deposit date:2008-12-17
Release date:2010-02-02
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (1.801 Å)
Cite:Structural analysis of L -2-keto-3-deoxyarabonate dehydratase an enzyme involved in an alternative bacterial pathway of L-arabinose metabolism in complex with pyruvate
To be Published
5IJA
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[NIFE] HYDROGENASE MATURATION PROTEASE HYBD FROM THERMOCOCCUS KODAKARENSIS
Descriptor:Hydrogenase-specific maturation endopeptidase
Authors:Kwon, S., Nishitani, Y., Watanabe, S., Miki, K.
Deposit date:2016-03-01
Release date:2016-06-01
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Crystal structure of a [NiFe] hydrogenase maturation protease HybD from Thermococcus kodakarensis KOD1
Proteins, 84, 2016
2ZPD
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CRYSTAL STRUCTURE OF THE R43L MUTANT OF LOLA IN THE OPEN FORM
Descriptor:Outer-membrane lipoprotein carrier protein
Authors:Takeda, K., Yokota, N., Oguchi, Y., Tokuda, H., Miki, K.
Deposit date:2008-07-10
Release date:2008-08-05
Last modified:2017-02-22
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Opening and closing of the hydrophobic cavity of LolA coupled to lipoprotein binding and release.
J.Biol.Chem., 283, 2008
3WJR
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CRYSTAL STRUCTURE OF HYPE IN COMPLEX WITH A NUCLEOTIDE
Descriptor:Hydrogenase expression/formation protein HypE, BENZAMIDINE, ADENOSINE MONOPHOSPHATE, ...
Authors:Tominaga, T., Watanabe, S., Miki, K.
Deposit date:2013-10-14
Release date:2013-12-18
Last modified:2014-01-22
Method:X-RAY DIFFRACTION (1.864 Å)
Cite:Crystal structures of the carbamoylated and cyanated forms of HypE for [NiFe] hydrogenase maturation
Proc.Natl.Acad.Sci.USA, 110, 2013
2D2F
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CRYSTAL STRUCTURE OF ATYPICAL CYTOPLASMIC ABC-ATPASE SUFC FROM THERMUS THERMOPHILUS HB8
Descriptor:SufC protein, MAGNESIUM ION, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Watanabe, S., Kita, A., Miki, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-09-08
Release date:2005-10-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of Atypical Cytoplasmic ABC-ATPase SufC from Thermus thermophilus HB8.
J.Mol.Biol., 353, 2005
3MBC
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CRYSTAL STRUCTURE OF MONOMERIC ISOCITRATE DEHYDROGENASE FROM CORYNEBACTERIUM GLUTAMICUM IN COMPLEX WITH NADP
Descriptor:Isocitrate dehydrogenase [NADP], MAGNESIUM ION, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Sidhu, N.S., Aich, S., Sheldrick, G.M., Delbaere, L.T.J.
Deposit date:2010-03-25
Release date:2011-04-06
Last modified:2011-11-02
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of a highly NADP+-specific isocitrate dehydrogenase.
Acta Crystallogr.,Sect.D, 67, 2011
1ITW
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CRYSTAL STRUCTURE OF THE MONOMERIC ISOCITRATE DEHYDROGENASE IN COMPLEX WITH ISOCITRATE AND MN
Descriptor:Isocitrate dehydrogenase, MANGANESE (II) ION, ISOCITRIC ACID
Authors:Yasutake, Y., Watanabe, S., Yao, M., Takada, Y., Fukunaga, N., Tanaka, I.
Deposit date:2002-02-12
Release date:2002-12-11
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure of the Monomeric Isocitrate Dehydrogenase: Evidence of a Protein Monomerization by a Domain Duplication
Structure, 10, 2002
2DWK
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CRYSTAL STRUCTURE OF THE RUN DOMAIN OF MOUSE RAP2 INTERACTING PROTEIN X
Descriptor:Protein RUFY3
Authors:Kukimoto-Niino, M., Murayama, K., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-08-15
Release date:2006-08-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of the RUN Domain of the RAP2-interacting Protein x
J.Biol.Chem., 281, 2006
5GU6
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CRYSTAL STRUCTURE OF HUMAN ERP44 FORM I
Descriptor:Endoplasmic reticulum resident protein 44, CHLORIDE ION
Authors:Watanabe, S., Inaba, K.
Deposit date:2016-08-26
Release date:2017-04-12
Last modified:2017-05-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of pH-dependent client binding by ERp44, a key regulator of protein secretion at the ER-Golgi interface
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5ZLQ
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CRYSTAL STRUCTURE OF C1ORF123
Descriptor:UPF0587 protein C1orf123, ZINC ION
Authors:Furukawa, Y., Lim, C.T., Tosha, T.
Deposit date:2018-03-29
Release date:2018-10-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:Identification of a novel zinc-binding protein, C1orf123, as an interactor with a heavy metal-associated domain
PLoS ONE, 13, 2018
6R77
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CRYSTAL STRUCTURE OF TRANS-3-HYDROXY-L-PROLINE DEHYDRATASE IN COMPLEX WITH SUBSTRATE - CLOSED CONFORMATION
Descriptor:Proline racemase, 3-HYDROXYPROLINE
Authors:Ferraris, D.M., Miggiano, R., Rizzi, M.
Deposit date:2019-03-28
Release date:2019-07-03
Last modified:2019-07-17
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of Thermococcus litoralis trans-3-hydroxy-l-proline dehydratase in the free and substrate-complexed form.
Biochem.Biophys.Res.Commun., 516, 2019
3KC6
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CRYSTAL STRUCTURE OF THE LARGE C-TERMINAL DOMAIN OF POLYMERASE BASIC PROTEIN 2 FROM INFLUENZA VIRUS A/VIET NAM/1203/2004 (H5N1)
Descriptor:Polymerase PB2, 1,2-ETHANEDIOL
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2009-10-20
Release date:2010-03-09
Last modified:2012-05-23
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Biological and structural characterization of a host-adapting amino acid in influenza virus.
Plos Pathog., 6, 2010
5GU7
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CRYSTAL STRUCTURE OF HUMAN ERP44 FORM II
Descriptor:Endoplasmic reticulum resident protein 44
Authors:Watanabe, S., Inaba, K.
Deposit date:2016-08-26
Release date:2017-04-12
Last modified:2017-05-03
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural basis of pH-dependent client binding by ERp44, a key regulator of protein secretion at the ER-Golgi interface
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
2Z1D
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CRYSTAL STRUCTURE OF [NIFE] HYDROGENASE MATURATION PROTEIN, HYPD FROM THERMOCOCCUS KODAKARAENSIS
Descriptor:Hydrogenase expression/formation protein hypD, IRON/SULFUR CLUSTER
Authors:Watanabe, S., Matsumi, R., Arai, T., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2007-05-08
Release date:2007-07-17
Last modified:2014-11-12
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling
Mol.Cell, 27, 2007
3FKK
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STRUCTURE OF L-2-KETO-3-DEOXYARABONATE DEHYDRATASE
Descriptor:L-2-keto-3-deoxyarabonate dehydratase, PHOSPHATE ION
Authors:Shimada, N., Mikami, B.
Deposit date:2008-12-17
Release date:2010-01-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural analysis of L -2-keto-3-deoxyarabonate dehydratase an enzyme involved in an alternative bacterial pathway of L-arabinose metabolism in complex with pyruvate
To be Published