Author results

6R76
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CRYSTAL STRUCTURE OF TRANS-3-HYDROXY-L-PROLINE DEHYDRATASE FROM THERMOCOCCUS LITORALIS - OPEN CONFORMATION
Descriptor:Proline racemase
Authors:Ferraris, D.M., Miggiano, R., Rizzi, M.
Deposit date:2019-03-28
Release date:2019-07-03
Last modified:2019-07-17
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of Thermococcus litoralis trans-3-hydroxy-l-proline dehydratase in the free and substrate-complexed form.
Biochem.Biophys.Res.Commun., 516, 2019
6R77
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CRYSTAL STRUCTURE OF TRANS-3-HYDROXY-L-PROLINE DEHYDRATASE IN COMPLEX WITH SUBSTRATE - CLOSED CONFORMATION
Descriptor:Proline racemase, 3-HYDROXYPROLINE
Authors:Ferraris, D.M., Miggiano, R., Rizzi, M.
Deposit date:2019-03-28
Release date:2019-07-03
Last modified:2019-07-17
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of Thermococcus litoralis trans-3-hydroxy-l-proline dehydratase in the free and substrate-complexed form.
Biochem.Biophys.Res.Commun., 516, 2019
5ZTF
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STRUCTURE OF CA2+ ATPASE
Descriptor:Sarcoplasmic/endoplasmic reticulum calcium ATPase 2, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, MAGNESIUM ION, ...
Authors:Inoue, M., Watanabe, S., Inaba, K.
Deposit date:2018-05-03
Release date:2019-05-22
Method:X-RAY DIFFRACTION (3.45 Å)
Cite:Structural Basis of Sarco/Endoplasmic Reticulum Ca2+-ATPase 2b Regulation via Transmembrane Helix Interplay.
Cell Rep, 27, 2019
6JJU
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STRUCTURE OF CA2+ ATPASE
Descriptor:Sarcoplasmic/endoplasmic reticulum calcium ATPase 2, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, MAGNESIUM ION, ...
Authors:Inoue, M., Sakuta, N., Watanabe, S., Inaba, K.
Deposit date:2019-02-27
Release date:2019-05-22
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural Basis of Sarco/Endoplasmic Reticulum Ca2+-ATPase 2b Regulation via Transmembrane Helix Interplay.
Cell Rep, 27, 2019
6JNJ
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CRYSTAL STRUCTURE OF AZOSPIRILLUM BRASILENSE L-ARABINOSE 1-DEHYDROGENASE (APO-FORM)
Descriptor:L-arabinose 1-dehydrogenase (NAD(P)(+)), PHOSPHATE ION
Authors:Watanabe, Y., Iga, C., Watanabe, S.
Deposit date:2019-03-16
Release date:2019-05-15
Last modified:2019-06-26
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural insights into the catalytic and substrate recognition mechanisms of bacterial l-arabinose 1-dehydrogenase.
Febs Lett., 593, 2019
6JNK
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CRYSTAL STRUCTURE OF AZOSPIRILLUM BRASILENSE L-ARABINOSE 1-DEHYDROGENASE (NADP-BOUND FORM)
Descriptor:L-arabinose 1-dehydrogenase (NAD(P)(+)), NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Watanabe, Y., Iga, C., Watanabe, S.
Deposit date:2019-03-16
Release date:2019-05-15
Last modified:2019-06-26
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural insights into the catalytic and substrate recognition mechanisms of bacterial l-arabinose 1-dehydrogenase.
Febs Lett., 593, 2019
6J7C
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CRYSTAL STRUCTURE OF PROLINE RACEMASE-LIKE PROTEIN FROM THERMOCOCCUS LITORALIS IN COMPLEX WITH PROLINE
Descriptor:Proline racemase, PROLINE
Authors:Watanabe, Y., Watanabe, S., Itoh, Y., Watanabe, Y.
Deposit date:2019-01-17
Release date:2019-02-27
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of substrate-bound bifunctional proline racemase/hydroxyproline epimerase from a hyperthermophilic archaeon.
Biochem. Biophys. Res. Commun., 511, 2019
5XWM
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HUMAN ERP44 ZINC-BOUND FORM
Descriptor:Endoplasmic reticulum resident protein 44, ZINC ION, CHLORIDE ION
Authors:Watanabe, S., Harayama, M., Inaba, K.
Deposit date:2017-06-30
Release date:2019-01-02
Last modified:2019-07-17
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Zinc regulates ERp44-dependent protein quality control in the early secretory pathway.
Nat Commun, 10, 2019
5ZLQ
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CRYSTAL STRUCTURE OF C1ORF123
Descriptor:UPF0587 protein C1orf123, ZINC ION
Authors:Furukawa, Y., Lim, C.T., Tosha, T.
Deposit date:2018-03-29
Release date:2018-10-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:Identification of a novel zinc-binding protein, C1orf123, as an interactor with a heavy metal-associated domain
PLoS ONE, 13, 2018
5YXY
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CRYSTAL STRUCTURE OF THE HYHL-HYPA COMPLEX (FORM I)
Descriptor:Cytosolic NiFe-hydrogenase, alpha subunit, Probable hydrogenase nickel incorporation protein HypA, ...
Authors:Kwon, S., Watanabe, S., Nishitani, Y., Miki, K.
Deposit date:2017-12-07
Release date:2018-06-20
Last modified:2018-07-18
Method:X-RAY DIFFRACTION (3.299 Å)
Cite:Crystal structures of a [NiFe] hydrogenase large subunit HyhL in an immature state in complex with a Ni chaperone HypA.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5YY0
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CRYSTAL STRUCTURE OF THE HYHL-HYPA COMPLEX (FORM II)
Descriptor:Cytosolic NiFe-hydrogenase, alpha subunit, Probable hydrogenase nickel incorporation protein HypA, ...
Authors:Kwon, S., Watanabe, S., Nishitani, Y., Miki, K.
Deposit date:2017-12-07
Release date:2018-06-20
Last modified:2018-07-18
Method:X-RAY DIFFRACTION (3.243 Å)
Cite:Crystal structures of a [NiFe] hydrogenase large subunit HyhL in an immature state in complex with a Ni chaperone HypA.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5W41
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ZIKA MR766 NLS IN COMPLEX WITH IMPORTIN ALPHA SUBUNIT-1
Descriptor:Importin subunit alpha-1, ZIKA MR766 NLS
Authors:Jeffress, S., Smith, K.M., Forwood, J.K.
Deposit date:2017-06-08
Release date:2018-06-13
Last modified:2019-03-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Zika virus NS5 forms supramolecular nuclear bodies that sequester importin alpha and modulate the host immune and pro-inflammatory response in neuronal cells.
ACS Infect Dis, 2019
5YXW
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CRYSTAL STRUCTURE OF THE PREFUSION FORM OF MEASLES VIRUS FUSION PROTEIN
Descriptor:glycoprotein F2, glycoprotein F1,measles virus fusion protein, N-ACETYL-D-GLUCOSAMINE
Authors:Hashiguchi, T., Fukuda, Y., Matsuoka, R., Kuroda, D., Kubota, M., Shirogane, Y., Watanabe, S., Tsumoto, K., Kohda, D., Plemper, R.K., Yanagi, Y.
Deposit date:2017-12-07
Release date:2018-02-21
Last modified:2018-03-21
Method:X-RAY DIFFRACTION (2.776 Å)
Cite:Structures of the prefusion form of measles virus fusion protein in complex with inhibitors.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5YZC
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CRYSTAL STRUCTURE OF THE PREFUSION FORM OF MEASLES VIRUS FUSION PROTEIN IN COMPLEX WITH A FUSION INHIBITOR COMPOUND (AS-48)
Descriptor:glycoprotein F2, glycoprotein F1,measles virus fusion protein, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Hashiguchi, T., Fukuda, Y., Matsuoka, R., Kuroda, D., Kubota, M., Shirogane, Y., Watanabe, S., Tsumoto, K., Kohda, D., Plemper, R.K., Yanagi, Y.
Deposit date:2017-12-14
Release date:2018-02-21
Last modified:2018-03-21
Method:X-RAY DIFFRACTION (2.334 Å)
Cite:Structures of the prefusion form of measles virus fusion protein in complex with inhibitors.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5YZD
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CRYSTAL STRUCTURE OF THE PREFUSION FORM OF MEASLES VIRUS FUSION PROTEIN IN COMPLEX WITH A FUSION INHIBITOR PEPTIDE (FIP)
Descriptor:glycoprotein F2, glycoprotein F1,measles virus fusion protein, peptide CBZ-DPN-PHE-GLY, ...
Authors:Hashiguchi, T., Fukuda, Y., Matsuoka, R., Kuroda, D., Kubota, M., Shirogane, Y., Watanabe, S., Tsumoto, K., Kohda, D., Plemper, R.K., Yanagi, Y.
Deposit date:2017-12-14
Release date:2018-02-21
Last modified:2018-03-21
Method:X-RAY DIFFRACTION (2.636 Å)
Cite:Structures of the prefusion form of measles virus fusion protein in complex with inhibitors.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5VKG
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SOLUTION-STATE NMR STRUCTURAL ENSEMBLE OF HUMAN TSG101 UEV IN COMPLEX WITH TENATOPRAZOLE
Descriptor:Tumor susceptibility gene 101 protein, 4-methoxy-1-(5-methoxy-3H-imidazo[4,5-b]pyridin-2-yl)-3,5-dimethyl-2-(sulfanylmethyl)pyridin-1-ium
Authors:Strickland, M., Ehrlich, L.S., Watanabe, S., Khan, M., Strub, M.-P., Luan, C.H., Powell, M.D., Leis, J., Tjandra, N., Carter, C.
Deposit date:2017-04-21
Release date:2017-11-15
Last modified:2017-11-22
Method:SOLUTION NMR
Cite:Tsg101 chaperone function revealed by HIV-1 assembly inhibitors.
Nat Commun, 8, 2017
5AZZ
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CRYSTAL STRUCTURE OF SELENO-INSULIN
Descriptor:Insulin A chain, Insulin B chain
Authors:Watanabe, S., Okumura, M., Arai, K., Takei, T., Asahina, Y., Hojo, H., Iwaoka, M., Inaba, K.
Deposit date:2015-10-23
Release date:2017-05-03
Last modified:2017-06-14
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Preparation of Selenoinsulin as a Long-Lasting Insulin Analogue.
Angew. Chem. Int. Ed. Engl., 56, 2017
5GU6
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CRYSTAL STRUCTURE OF HUMAN ERP44 FORM I
Descriptor:Endoplasmic reticulum resident protein 44, CHLORIDE ION
Authors:Watanabe, S., Inaba, K.
Deposit date:2016-08-26
Release date:2017-04-12
Last modified:2017-05-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of pH-dependent client binding by ERp44, a key regulator of protein secretion at the ER-Golgi interface
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5GU7
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CRYSTAL STRUCTURE OF HUMAN ERP44 FORM II
Descriptor:Endoplasmic reticulum resident protein 44
Authors:Watanabe, S., Inaba, K.
Deposit date:2016-08-26
Release date:2017-04-12
Last modified:2017-05-03
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural basis of pH-dependent client binding by ERp44, a key regulator of protein secretion at the ER-Golgi interface
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5AYK
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CRYSTAL STRUCTURE OF ERDJ5 FORM I
Descriptor:DnaJ homolog subfamily C member 10, 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, CHLORIDE ION
Authors:Watanabe, S., Maegawa, K., Inaba, K.
Deposit date:2015-08-22
Release date:2017-02-15
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Highly dynamic nature of ERdj5 is essential for enhancement of the ER associated degradation
To Be Published
5AYL
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CRYSTAL STRUCTURE OF ERDJ5 FORM II
Descriptor:DnaJ homolog subfamily C member 10, 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE
Authors:Watanabe, S., Maegawa, K., Inaba, K.
Deposit date:2015-08-22
Release date:2017-02-15
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Highly dynamic nature of ERdj5 is essential for enhancement of the ER associated degradation
To Be Published
5B2C
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CRYSTAL STRUCTURE OF MUMPS VIRUS HEMAGGLUTININ-NEURAMINIDASE
Descriptor:HN protein, N-ACETYL-D-GLUCOSAMINE, SULFATE ION
Authors:Kubota, M., Takeuchi, K., Watanabe, S., Ohno, S., Matsuoka, R., Kohda, D., Hiramatsu, H., Suzuki, Y., Nakayama, T., Terada, T., Shimizu, K., Shimizu, N., Yanagi, Y., Hashiguchi, T.
Deposit date:2016-01-14
Release date:2016-09-28
Last modified:2016-10-26
Method:X-RAY DIFFRACTION (2.238 Å)
Cite:Trisaccharide containing alpha 2,3-linked sialic acid is a receptor for mumps virus
Proc.Natl.Acad.Sci.USA, 113, 2016
5B2D
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CRYSTAL STRUCTURE OF MUMPS VIRUS HEMAGGLUTININ-NEURAMINIDASE BOUND TO 3-SIALYLLACTOSE
Descriptor:HN protein, N-ACETYL-D-GLUCOSAMINE, 5-(ACETYLAMINO)-3,5-DIDEOXYNON-2-ULOPYRANONOSYL-(2->3)-BETA-D-LYXO-HEXOPYRANOSYL-(1->4)HEXOPYRANOSE, ...
Authors:Kubota, M., Takeuchi, K., Watanabe, S., Ohno, S., Matsuoka, R., Kohda, D., Hiramatsu, H., Suzuki, Y., Nakayama, T., Terada, T., Shimizu, K., Shimizu, N., Yanagi, Y., Hashiguchi, T.
Deposit date:2016-01-14
Release date:2016-09-28
Last modified:2016-10-26
Method:X-RAY DIFFRACTION (2.177 Å)
Cite:Trisaccharide containing alpha 2,3-linked sialic acid is a receptor for mumps virus
Proc.Natl.Acad.Sci.USA, 113, 2016
5IJA
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[NIFE] HYDROGENASE MATURATION PROTEASE HYBD FROM THERMOCOCCUS KODAKARENSIS
Descriptor:Hydrogenase-specific maturation endopeptidase
Authors:Kwon, S., Nishitani, Y., Watanabe, S., Miki, K.
Deposit date:2016-03-01
Release date:2016-06-01
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Crystal structure of a [NiFe] hydrogenase maturation protease HybD from Thermococcus kodakarensis KOD1
Proteins, 84, 2016
5AUN
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CRYSTAL STRUCTURE OF THE HYPAB-NI COMPLEX
Descriptor:Probable hydrogenase nickel incorporation protein HypA, ATPase involved in chromosome partitioning, ParA/MinD family, ...
Authors:Watanabe, S., Kawashima, T., Nishitani, Y., Miki, K.
Deposit date:2015-05-27
Release date:2015-06-24
Last modified:2015-07-08
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Structural basis of a Ni acquisition cycle for [NiFe] hydrogenase by Ni-metallochaperone HypA and its enhancer
Proc.Natl.Acad.Sci.USA, 112, 2015