Author results

7CGR
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CRYSTAL STRUCTURE OF AZOSPIRILLUM BRASILENSE L-ARABINOSE 1-DEHYDROGENASE E147A MUTANT (NADP AND GLYCEROL BOUND FORM)
Descriptor:L-arabinose 1-dehydrogenase (NAD(P)(+)), NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, GLYCEROL
Authors:Yoshiwara, K., Watanabe, Y., Watanabe, S.
Deposit date:2020-07-02
Release date:2020-07-29
Method:X-RAY DIFFRACTION (2.093 Å)
Cite:Crystal structure of Azospirillum brasilense L-arabinose 1-dehydrogenase E147A with NADP and L-arabinose
To Be Published
7CGQ
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CRYSTAL STRUCTURE OF AZOSPIRILLUM BRASILENSE L-ARABINOSE 1-DEHYDROGENASE E147A MUTANT (NADP AND L-ARABINOSE BOUND FORM)
Descriptor:L-arabinose 1-dehydrogenase (NAD(P)(+)), NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, alpha-L-arabinopyranose
Authors:Yoshiwara, K., Watanabe, Y., Watanabe, S.
Deposit date:2020-07-02
Release date:2020-07-29
Method:X-RAY DIFFRACTION (2.208 Å)
Cite:Crystal structure of Azospirillum brasilense L-arabinose 1-dehydrogenase E147A with NADP and L-arabinose
To Be Published
7C0E
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CRYSTAL STRUCTURE OF AZOSPIRILLUM BRASILENSE L-2-KETO-3-DEOXYARABONATE DEHYDRATASE (2-OXOBUTYRATE-BOUND FORM)
Descriptor:L-2-keto-3-deoxyarabonate dehydratase
Authors:Watanabe, Y., Ono, A., Watanabe, S.
Deposit date:2020-05-01
Release date:2020-08-05
Method:X-RAY DIFFRACTION (2.204 Å)
Cite:Biochemical and structural characterization of L-2-keto-3-deoxyarabinonate dehydratase: A unique catalytic mechanism in the Class I aldolase protein superfamily.
Biochemistry, 2020
7C0D
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CRYSTAL STRUCTURE OF AZOSPIRILLUM BRASILENSE L-2-KETO-3-DEOXYARABONATE DEHYDRATASE (HYDROXYPYRUVATE-BOUND FORM)
Descriptor:L-2-keto-3-deoxyarabonate dehydratase
Authors:Watanabe, Y., Watanabe, S.
Deposit date:2020-05-01
Release date:2020-08-05
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Biochemical and structural characterization of L-2-keto-3-deoxyarabinonate dehydratase: A unique catalytic mechanism in the Class I aldolase protein superfamily.
Biochemistry, 2020
7C0C
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CRYSTAL STRUCTURE OF AZOSPIRILLUM BRASILENSE L-2-KETO-3-DEOXYARABONATE DEHYDRATASE (APO FORM)
Descriptor:L-2-keto-3-deoxyarabonate dehydratase
Authors:Watanabe, Y., Nobuchi, R., Watanabe, S.
Deposit date:2020-05-01
Release date:2020-08-05
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Biochemical and structural characterization of L-2-keto-3-deoxyarabinonate dehydratase: A unique catalytic mechanism in the Class I aldolase protein superfamily.
Biochemistry, 2020
7BYW
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CRYSTAL STRUCTURE OF ACIDOVORAX AVENAE L-FUCOSE MUTAROTASE (L-FUCOSE-BOUND FORM)
Descriptor:L-fucose mutarotase, 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, alpha-L-fucopyranose
Authors:Watanabe, Y., Watanabe, S.
Deposit date:2020-04-24
Release date:2020-05-27
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Functional and structural characterization of a novel L-fucose mutarotase involved in non-phosphorylative pathway of L-fucose metabolism.
Biochem.Biophys.Res.Commun., 528, 2020
7BYU
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CRYSTAL STRUCTURE OF ACIDOVORAX AVENAE L-FUCOSE MUTAROTASE (APO FORM)
Descriptor:L-fucose mutarotase, 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, 1,2-ETHANEDIOL
Authors:Watanabe, Y., Fukui, Y., Watanabe, S.
Deposit date:2020-04-24
Release date:2020-05-27
Last modified:2020-06-24
Method:X-RAY DIFFRACTION (2.206 Å)
Cite:Functional and structural characterization of a novel L-fucose mutarotase involved in non-phosphorylative pathway of L-fucose metabolism.
Biochem.Biophys.Res.Commun., 528, 2020
6R77
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CRYSTAL STRUCTURE OF TRANS-3-HYDROXY-L-PROLINE DEHYDRATASE IN COMPLEX WITH SUBSTRATE - CLOSED CONFORMATION
Descriptor:Proline racemase, 3-HYDROXYPROLINE
Authors:Ferraris, D.M., Miggiano, R., Rizzi, M.
Deposit date:2019-03-28
Release date:2019-07-03
Last modified:2019-07-17
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of Thermococcus litoralis trans-3-hydroxy-l-proline dehydratase in the free and substrate-complexed form.
Biochem.Biophys.Res.Commun., 516, 2019
6R76
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CRYSTAL STRUCTURE OF TRANS-3-HYDROXY-L-PROLINE DEHYDRATASE FROM THERMOCOCCUS LITORALIS - OPEN CONFORMATION
Descriptor:Proline racemase
Authors:Ferraris, D.M., Miggiano, R., Rizzi, M.
Deposit date:2019-03-28
Release date:2019-07-03
Last modified:2019-07-17
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of Thermococcus litoralis trans-3-hydroxy-l-proline dehydratase in the free and substrate-complexed form.
Biochem.Biophys.Res.Commun., 516, 2019
6L07
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CRYSTAL STRUCTURE OF ESCHERICHIA COLI PHOSPHATIDYLSERINE DECARBOXYLASE (PE-BOUND FORM)
Descriptor:Phosphatidylserine decarboxylase beta chain, Phosphatidylserine decarboxylase alpha chain, 2-azaniumylethyl (2R)-2,3-bis{[(9Z)-octadec-9-enoyl]oxy}propyl phosphate
Authors:Watanabe, Y., Watanabe, S.
Deposit date:2019-09-26
Release date:2020-04-15
Last modified:2020-07-22
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Structural Basis for Phosphatidylethanolamine Biosynthesis by Bacterial Phosphatidylserine Decarboxylase.
Structure, 28, 2020
6L06
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CRYSTAL STRUCTURE OF ESCHERICHIA COLI PHOSPHATIDYLSERINE DECARBOXYLASE (APO-FORM)
Descriptor:Phosphatidylserine decarboxylase beta chain, Phosphatidylserine decarboxylase alpha chain
Authors:Watanabe, Y., Watanabe, S.
Deposit date:2019-09-26
Release date:2020-04-15
Last modified:2020-07-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural Basis for Phosphatidylethanolamine Biosynthesis by Bacterial Phosphatidylserine Decarboxylase.
Structure, 28, 2020
6K9Y
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CRYSTAL STRUCTURE OF HUMAN VAT-1
Descriptor:Synaptic vesicle membrane protein VAT-1 homolog, NITRATE ION
Authors:Watanabe, Y., Endo, T.
Deposit date:2019-06-19
Release date:2020-02-12
Last modified:2020-03-18
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis for interorganelle phospholipid transport mediated by VAT-1.
J.Biol.Chem., 295, 2020
6JNK
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CRYSTAL STRUCTURE OF AZOSPIRILLUM BRASILENSE L-ARABINOSE 1-DEHYDROGENASE (NADP-BOUND FORM)
Descriptor:L-arabinose 1-dehydrogenase (NAD(P)(+)), NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Watanabe, Y., Iga, C., Watanabe, S.
Deposit date:2019-03-16
Release date:2019-05-15
Last modified:2019-06-26
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural insights into the catalytic and substrate recognition mechanisms of bacterial l-arabinose 1-dehydrogenase.
Febs Lett., 593, 2019
6JNJ
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CRYSTAL STRUCTURE OF AZOSPIRILLUM BRASILENSE L-ARABINOSE 1-DEHYDROGENASE (APO-FORM)
Descriptor:L-arabinose 1-dehydrogenase (NAD(P)(+)), PHOSPHATE ION
Authors:Watanabe, Y., Iga, C., Watanabe, S.
Deposit date:2019-03-16
Release date:2019-05-15
Last modified:2019-06-26
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural insights into the catalytic and substrate recognition mechanisms of bacterial l-arabinose 1-dehydrogenase.
Febs Lett., 593, 2019
6JJU
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STRUCTURE OF CA2+ ATPASE
Descriptor:Sarcoplasmic/endoplasmic reticulum calcium ATPase 2, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, MAGNESIUM ION, ...
Authors:Inoue, M., Sakuta, N., Watanabe, S., Inaba, K.
Deposit date:2019-02-27
Release date:2019-05-22
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural Basis of Sarco/Endoplasmic Reticulum Ca2+-ATPase 2b Regulation via Transmembrane Helix Interplay.
Cell Rep, 27, 2019
6J7C
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CRYSTAL STRUCTURE OF PROLINE RACEMASE-LIKE PROTEIN FROM THERMOCOCCUS LITORALIS IN COMPLEX WITH PROLINE
Descriptor:Proline racemase, PROLINE
Authors:Watanabe, Y., Watanabe, S., Itoh, Y., Watanabe, Y.
Deposit date:2019-01-17
Release date:2019-02-27
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of substrate-bound bifunctional proline racemase/hydroxyproline epimerase from a hyperthermophilic archaeon.
Biochem. Biophys. Res. Commun., 511, 2019
6IGJ
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CRYSTAL STRUCTURE OF FT CONDITION 4
Descriptor:Protein FLOWERING LOCUS T, MAGNESIUM ION
Authors:Watanabe, S., Nakamura, Y., Kanehara, K., Inaba, K.
Deposit date:2018-09-25
Release date:2019-12-25
Method:X-RAY DIFFRACTION (1.501 Å)
Cite:High-Resolution Crystal Structure of Arabidopsis FLOWERING LOCUS T Illuminates Its Phospholipid-Binding Site in Flowering.
Iscience, 21, 2019
6IGI
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CRYSTAL STRUCTURE OF FT CONDITION 2
Descriptor:Protein FLOWERING LOCUS T, 1,2-ETHANEDIOL
Authors:Watanabe, S., Nakamura, Y., Kanehara, K., Inaba, K.
Deposit date:2018-09-25
Release date:2019-12-25
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:High-Resolution Crystal Structure of Arabidopsis FLOWERING LOCUS T Illuminates Its Phospholipid-Binding Site in Flowering.
Iscience, 21, 2019
6IGH
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CRYSTAL STRUCTURE OF FT CONDITION3
Descriptor:Protein FLOWERING LOCUS T, 1,2-ETHANEDIOL
Authors:Watanabe, S., Nakamura, Y., Kanehara, K., Inaba, K.
Deposit date:2018-09-25
Release date:2019-12-25
Method:X-RAY DIFFRACTION (1.01 Å)
Cite:High-Resolution Crystal Structure of Arabidopsis FLOWERING LOCUS T Illuminates Its Phospholipid-Binding Site in Flowering.
Iscience, 21, 2019
6IGG
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CRYSTAL STRUCTURE OF FT CONDITION 1
Descriptor:Protein FLOWERING LOCUS T, 1,2-ETHANEDIOL
Authors:Watanabe, S., Nakamura, Y., Kanehara, K., Inaba, K.
Deposit date:2018-09-25
Release date:2019-12-25
Last modified:2020-03-25
Method:X-RAY DIFFRACTION (1 Å)
Cite:High-Resolution Crystal Structure of Arabidopsis FLOWERING LOCUS T Illuminates Its Phospholipid-Binding Site in Flowering.
Iscience, 21, 2019
5ZTF
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STRUCTURE OF CA2+ ATPASE
Descriptor:Sarcoplasmic/endoplasmic reticulum calcium ATPase 2, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, MAGNESIUM ION, ...
Authors:Inoue, M., Watanabe, S., Inaba, K.
Deposit date:2018-05-03
Release date:2019-05-22
Method:X-RAY DIFFRACTION (3.45 Å)
Cite:Structural Basis of Sarco/Endoplasmic Reticulum Ca2+-ATPase 2b Regulation via Transmembrane Helix Interplay.
Cell Rep, 27, 2019
5ZLQ
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CRYSTAL STRUCTURE OF C1ORF123
Descriptor:UPF0587 protein C1orf123, ZINC ION
Authors:Furukawa, Y., Lim, C.T., Tosha, T.
Deposit date:2018-03-29
Release date:2018-10-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:Identification of a novel zinc-binding protein, C1orf123, as an interactor with a heavy metal-associated domain
PLoS ONE, 13, 2018
5YZD
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CRYSTAL STRUCTURE OF THE PREFUSION FORM OF MEASLES VIRUS FUSION PROTEIN IN COMPLEX WITH A FUSION INHIBITOR PEPTIDE (FIP)
Descriptor:glycoprotein F2, glycoprotein F1,measles virus fusion protein, peptide CBZ-DPN-PHE-GLY, ...
Authors:Hashiguchi, T., Fukuda, Y., Matsuoka, R., Kuroda, D., Kubota, M., Shirogane, Y., Watanabe, S., Tsumoto, K., Kohda, D., Plemper, R.K., Yanagi, Y.
Deposit date:2017-12-14
Release date:2018-02-21
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.636 Å)
Cite:Structures of the prefusion form of measles virus fusion protein in complex with inhibitors.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5YZC
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CRYSTAL STRUCTURE OF THE PREFUSION FORM OF MEASLES VIRUS FUSION PROTEIN IN COMPLEX WITH A FUSION INHIBITOR COMPOUND (AS-48)
Descriptor:glycoprotein F2, glycoprotein F1,measles virus fusion protein, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Hashiguchi, T., Fukuda, Y., Matsuoka, R., Kuroda, D., Kubota, M., Shirogane, Y., Watanabe, S., Tsumoto, K., Kohda, D., Plemper, R.K., Yanagi, Y.
Deposit date:2017-12-14
Release date:2018-02-21
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.334 Å)
Cite:Structures of the prefusion form of measles virus fusion protein in complex with inhibitors.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5YY0
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CRYSTAL STRUCTURE OF THE HYHL-HYPA COMPLEX (FORM II)
Descriptor:Cytosolic NiFe-hydrogenase, alpha subunit, Probable hydrogenase nickel incorporation protein HypA, ...
Authors:Kwon, S., Watanabe, S., Nishitani, Y., Miki, K.
Deposit date:2017-12-07
Release date:2018-06-20
Last modified:2018-07-18
Method:X-RAY DIFFRACTION (3.243 Å)
Cite:Crystal structures of a [NiFe] hydrogenase large subunit HyhL in an immature state in complex with a Ni chaperone HypA.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
167132
数据于2020-07-29公开中