Author results

5GU6
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CRYSTAL STRUCTURE OF HUMAN ERP44 FORM I
Descriptor:Endoplasmic reticulum resident protein 44, CHLORIDE ION
Authors:Watanabe, S., Inaba, K.
Deposit date:2016-08-26
Release date:2017-04-12
Last modified:2017-05-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of pH-dependent client binding by ERp44, a key regulator of protein secretion at the ER-Golgi interface
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5GU7
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CRYSTAL STRUCTURE OF HUMAN ERP44 FORM II
Descriptor:Endoplasmic reticulum resident protein 44
Authors:Watanabe, S., Inaba, K.
Deposit date:2016-08-26
Release date:2017-04-12
Last modified:2017-05-03
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural basis of pH-dependent client binding by ERp44, a key regulator of protein secretion at the ER-Golgi interface
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5XWM
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HUMAN ERP44 ZINC-BOUND FORM
Descriptor:Endoplasmic reticulum resident protein 44, ZINC ION, CHLORIDE ION
Authors:Watanabe, S., Harayama, M., Inaba, K.
Deposit date:2017-06-30
Release date:2019-01-02
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Structural and mechanistic basis of zinc-dependent regulation of ERp44 for protein quality control in the early secretory pathway
To Be Published
2D2E
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CRYSTAL STRUCTURE OF ATYPICAL CYTOPLASMIC ABC-ATPASE SUFC FROM THERMUS THERMOPHILUS HB8
Descriptor:SufC protein, CHLORIDE ION, GLYCEROL
Authors:Watanabe, S., Kita, A., Miki, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-09-08
Release date:2005-10-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structure of Atypical Cytoplasmic ABC-ATPase SufC from Thermus thermophilus HB8.
J.Mol.Biol., 353, 2005
2D2F
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CRYSTAL STRUCTURE OF ATYPICAL CYTOPLASMIC ABC-ATPASE SUFC FROM THERMUS THERMOPHILUS HB8
Descriptor:SufC protein, MAGNESIUM ION, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Watanabe, S., Kita, A., Miki, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-09-08
Release date:2005-10-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of Atypical Cytoplasmic ABC-ATPase SufC from Thermus thermophilus HB8.
J.Mol.Biol., 353, 2005
2Z1C
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CRYSTAL STRUCTURE OF HYPC FROM THERMOCOCCUS KODAKARAENSIS KOD1
Descriptor:Hydrogenase expression/formation protein HypC, GLYCEROL, TETRAETHYLENE GLYCOL
Authors:Watanabe, S., Matsumi, R., Arai, T., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2007-05-08
Release date:2007-07-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling
Mol.Cell, 27, 2007
2Z1D
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CRYSTAL STRUCTURE OF [NIFE] HYDROGENASE MATURATION PROTEIN, HYPD FROM THERMOCOCCUS KODAKARAENSIS
Descriptor:Hydrogenase expression/formation protein hypD, IRON/SULFUR CLUSTER
Authors:Watanabe, S., Matsumi, R., Arai, T., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2007-05-08
Release date:2007-07-17
Last modified:2014-11-12
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling
Mol.Cell, 27, 2007
2Z1E
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CRYSTAL STRUCTURE OF HYPE FROM THERMOCOCCUS KODAKARAENSIS (OUTWARD FORM)
Descriptor:Hydrogenase expression/formation protein HypE
Authors:Watanabe, S., Matsumi, R., Arai, T., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2007-05-08
Release date:2007-07-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling
Mol.Cell, 27, 2007
2Z1F
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CRYSTAL STRUCTURE OF HYPE FROM THERMOCOCCUS KODAKARAENSIS (INWARD FORM)
Descriptor:Hydrogenase expression/formation protein HypE
Authors:Watanabe, S., Matsumi, R., Arai, T., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2007-05-08
Release date:2007-07-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling
Mol.Cell, 27, 2007
2ZHG
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CRYSTAL STRUCTURE OF SOXR IN COMPLEX WITH DNA
Descriptor:DNA (5'-D(*DGP*DCP*DCP*DTP*DCP*DAP*DAP*DGP*DTP*DTP*DAP*DAP*DCP*DTP*DTP*DGP*DAP*DGP*DGP*DC)-3'), Redox-sensitive transcriptional activator soxR, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Watanabe, S., Kita, A., Kobayashi, K., Miki, K.
Deposit date:2008-02-05
Release date:2008-03-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of the [2Fe-2S] oxidative-stress sensor SoxR bound to DNA
Proc.Natl.Acad.Sci.Usa, 105, 2008
2ZHH
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CRYSTAL STRUCTURE OF SOXR
Descriptor:Redox-sensitive transcriptional activator soxR, FE2/S2 (INORGANIC) CLUSTER, 2,3-DIHYDROXY-1,4-DITHIOBUTANE
Authors:Watanabe, S., Kita, A., Kobayashi, K., Miki, K.
Deposit date:2008-02-05
Release date:2008-03-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structure of the [2Fe-2S] oxidative-stress sensor SoxR bound to DNA
Proc.Natl.Acad.Sci.Usa, 105, 2008
3A43
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CRYSTAL STRUCTURE OF HYPA
Descriptor:Hydrogenase nickel incorporation protein hypA, ZINC ION
Authors:Watanabe, S., Arai, T., Matsumi, R., Aromi, H., Imanaka, T., Miki, K.
Deposit date:2009-06-30
Release date:2009-10-06
Last modified:2016-12-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of HypA, a nickel-binding metallochaperone for [NiFe] hydrogenase maturation.
J.Mol.Biol., 394, 2009
3A44
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CRYSTAL STRUCTURE OF HYPA IN THE DIMERIC FORM
Descriptor:Hydrogenase nickel incorporation protein hypA, ZINC ION
Authors:Watanabe, S., Arai, T., Matsumi, R., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2009-06-30
Release date:2009-10-06
Last modified:2017-02-22
Method:X-RAY DIFFRACTION (3.31 Å)
Cite:Crystal structure of HypA, a nickel-binding metallochaperone for [NiFe] hydrogenase maturation.
J.Mol.Biol., 394, 2009
3VYR
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CRYSTAL STRUCTURE OF THE HYPC-HYPD COMPLEX
Descriptor:Hydrogenase expression/formation protein HypC, Hydrogenase expression/formation protein HypD, CITRIC ACID, ...
Authors:Watanabe, S., Miki, K.
Deposit date:2012-10-02
Release date:2012-11-28
Last modified:2013-07-31
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Crystal structures of the HypCD complex and the HypCDE ternary complex: transient intermediate complexes during [NiFe] hydrogenase maturation
Structure, 20, 2012
3VYS
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CRYSTAL STRUCTURE OF THE HYPC-HYPD-HYPE COMPLEX (FORM I)
Descriptor:Hydrogenase expression/formation protein HypC, Hydrogenase expression/formation protein HypD, Hydrogenase expression/formation protein HypE, ...
Authors:Watanabe, S., Miki, K.
Deposit date:2012-10-02
Release date:2012-11-28
Last modified:2013-07-31
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Crystal structures of the HypCD complex and the HypCDE ternary complex: transient intermediate complexes during [NiFe] hydrogenase maturation
Structure, 20, 2012
3VYT
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CRYSTAL STRUCTURE OF THE HYPC-HYPD-HYPE COMPLEX (FORM I INWARD)
Descriptor:Hydrogenase expression/formation protein HypC, Hydrogenase expression/formation protein HypD, Hydrogenase expression/formation protein HypE, ...
Authors:Watanabe, S., Miki, K.
Deposit date:2012-10-02
Release date:2012-11-28
Last modified:2013-07-31
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal structures of the HypCD complex and the HypCDE ternary complex: transient intermediate complexes during [NiFe] hydrogenase maturation
Structure, 20, 2012
3VYU
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CRYSTAL STRUCTURE OF THE HYPC-HYPD-HYPE COMPLEX (FORM II)
Descriptor:Hydrogenase expression/formation protein HypC, Hydrogenase expression/formation protein HypD, Hydrogenase expression/formation protein HypE, ...
Authors:Watanabe, S., Miki, K.
Deposit date:2012-10-02
Release date:2012-11-28
Last modified:2013-07-31
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Crystal structures of the HypCD complex and the HypCDE ternary complex: transient intermediate complexes during [NiFe] hydrogenase maturation
Structure, 20, 2012
5AUN
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CRYSTAL STRUCTURE OF THE HYPAB-NI COMPLEX
Descriptor:Probable hydrogenase nickel incorporation protein HypA, ATPase involved in chromosome partitioning, ParA/MinD family, ...
Authors:Watanabe, S., Kawashima, T., Nishitani, Y., Miki, K.
Deposit date:2015-05-27
Release date:2015-06-24
Last modified:2015-07-08
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Structural basis of a Ni acquisition cycle for [NiFe] hydrogenase by Ni-metallochaperone HypA and its enhancer
Proc.Natl.Acad.Sci.USA, 112, 2015
5AUO
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CRYSTAL STRUCTURE OF THE HYPAB-NI COMPLEX (AMPPCP)
Descriptor:Probable hydrogenase nickel incorporation protein HypA, ATPase involved in chromosome partitioning, ParA/MinD family, ...
Authors:Watanabe, S., Kawashima, T., Nishitani, Y., Miki, K.
Deposit date:2015-05-27
Release date:2015-06-24
Last modified:2015-07-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis of a Ni acquisition cycle for [NiFe] hydrogenase by Ni-metallochaperone HypA and its enhancer
Proc.Natl.Acad.Sci.USA, 112, 2015
5AUP
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CRYSTAL STRUCTURE OF THE HYPAB COMPLEX
Descriptor:Probable hydrogenase nickel incorporation protein HypA, ATPase involved in chromosome partitioning, ParA/MinD family, ...
Authors:Watanabe, S., Kawashima, T., Nishitani, Y., Miki, K.
Deposit date:2015-05-27
Release date:2015-06-24
Last modified:2015-07-08
Method:X-RAY DIFFRACTION (3.102 Å)
Cite:Structural basis of a Ni acquisition cycle for [NiFe] hydrogenase by Ni-metallochaperone HypA and its enhancer
Proc.Natl.Acad.Sci.USA, 112, 2015
5AUQ
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CRYSTAL STRUCTURE OF ATPASE-TYPE HYPB IN THE NUCLEOTIDE FREE STATE
Descriptor:ATPase involved in chromosome partitioning, ParA/MinD family, Mrp homolog, ...
Authors:Watanabe, S., Kawashima, T., Nishitani, Y., Miki, K.
Deposit date:2015-05-27
Release date:2015-06-24
Last modified:2015-07-08
Method:X-RAY DIFFRACTION (2.525 Å)
Cite:Structural basis of a Ni acquisition cycle for [NiFe] hydrogenase by Ni-metallochaperone HypA and its enhancer
Proc.Natl.Acad.Sci.USA, 112, 2015
5AYK
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CRYSTAL STRUCTURE OF ERDJ5 FORM I
Descriptor:DnaJ homolog subfamily C member 10, 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, CHLORIDE ION
Authors:Watanabe, S., Maegawa, K., Inaba, K.
Deposit date:2015-08-22
Release date:2017-02-15
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Highly dynamic nature of ERdj5 is essential for enhancement of the ER associated degradation
To Be Published
5AYL
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CRYSTAL STRUCTURE OF ERDJ5 FORM II
Descriptor:DnaJ homolog subfamily C member 10, 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE
Authors:Watanabe, S., Maegawa, K., Inaba, K.
Deposit date:2015-08-22
Release date:2017-02-15
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Highly dynamic nature of ERdj5 is essential for enhancement of the ER associated degradation
To Be Published
5AZZ
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CRYSTAL STRUCTURE OF SELENO-INSULIN
Descriptor:Insulin A chain, Insulin B chain
Authors:Watanabe, S., Okumura, M., Arai, K., Takei, T., Asahina, Y., Hojo, H., Iwaoka, M., Inaba, K.
Deposit date:2015-10-23
Release date:2017-05-03
Last modified:2017-06-14
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Preparation of Selenoinsulin as a Long-Lasting Insulin Analogue.
Angew. Chem. Int. Ed. Engl., 56, 2017
6J7C
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CRYSTAL STRUCTURE OF PROLINE RACEMASE-LIKE PROTEIN FROM THERMOCOCCUS LITORALIS IN COMPLEX WITH PROLINE
Descriptor:Proline racemase, PROLINE
Authors:Watanabe, Y., Watanabe, S., Itoh, Y., Watanabe, Y.
Deposit date:2019-01-17
Release date:2019-02-27
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of substrate-bound bifunctional proline racemase/hydroxyproline epimerase from a hyperthermophilic archaeon.
Biochem. Biophys. Res. Commun., 511, 2019