Author results

2KOI
  • Download 2koi
  • View 2koi
Molmil generated image of 2koi
REFINED SOLUTION STRUCTURE OF A CYANOBACTERIAL PHYTOCHROME GAF DOMAIN IN THE RED LIGHT-ABSORBING GROUND STATE
Descriptor:Sensor protein, PHYCOCYANOBILIN
Authors:Cornilescu, C.C., Cornilescu, G., Ulijasz, A.T., Vierstra, R.D., Markley, J.L., Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2009-09-22
Release date:2009-11-03
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural basis for the photoconversion of a phytochrome to the activated Pfr form
Nature, 463, 2010
1ZTU
  • Download 1ztu
  • View 1ztu
Molmil generated image of 1ztu
STRUCTURE OF THE CHROMOPHORE BINDING DOMAIN OF BACTERIAL PHYTOCHROME
Descriptor:Bacteriophytochrome, BILIVERDINE IX ALPHA
Authors:Wagner, J.R., Brunzelle, J.S., Forest, K.T., Vierstra, R.D.
Deposit date:2005-05-27
Release date:2005-11-15
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A light-sensing knot revealed by the structure of the chromophore-binding domain of phytochrome.
Nature, 438, 2005
2AAK
  • Download 2aak
  • View 2aak
Molmil generated image of 2aak
UBIQUITIN CONJUGATING ENZYME FROM ARABIDOPSIS THALIANA
Descriptor:UBIQUITIN CONJUGATING ENZYME
Authors:Cook, W.J., Jeffrey, L.C., Sullivan, M.L., Vierstra, R.D.
Deposit date:1997-11-06
Release date:1998-03-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Three-dimensional structure of a ubiquitin-conjugating enzyme (E2).
J.Biol.Chem., 267, 1992
2K2N
  • Download 2k2n
  • View 2k2n
Molmil generated image of 2k2n
SOLUTION STRUCTURE OF A CYANOBACTERIAL PHYTOCHROME GAF DOMAIN IN THE RED LIGHT-ABSORBING GROUND STATE
Descriptor:Sensor protein, PHYCOCYANOBILIN
Authors:Cornilescu, C.C., Cornilescu, G., Ulijasz, A.T., Vierstra, R.D., Markley, J.L.
Deposit date:2008-04-04
Release date:2008-09-23
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of a cyanobacterial phytochrome GAF domain in the red-light-absorbing ground state.
J.Mol.Biol., 383, 2008
2KLI
  • Download 2kli
  • View 2kli
Molmil generated image of 2kli
STRUCTURAL BASIS FOR THE PHOTOCONVERSION OF A PHYTOCHROME TO THE ACTIVATED FAR-RED LIGHT-ABSORBING FORM
Descriptor:Sensor protein, PHYCOCYANOBILIN
Authors:Cornilescu, C.C., Cornilescu, G., Ulijasz, A.T., Zhang, J., Rivera, M., Vierstra, R.D., Markley, J.L., Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2009-07-03
Release date:2009-11-03
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural basis for the photoconversion of a phytochrome to the activated Pfr form
Nature, 463, 2010
2LB5
  • Download 2lb5
  • View 2lb5
Molmil generated image of 2lb5
REFINED STRUCTURAL BASIS FOR THE PHOTOCONVERSION OF A PHYTOCHROME TO THE ACTIVATED FAR-RED LIGHT-ABSORBING FORM
Descriptor:Sensor histidine kinase, PHYCOCYANOBILIN
Authors:Cornilescu, C.C., Cornilescu, G., Ulijasz, A.T., Vierstra, R.D., Markley, J.L.
Deposit date:2011-03-23
Release date:2011-06-29
Last modified:2014-01-01
Method:SOLUTION NMR
Cite:Structural basis for the photoconversion of a phytochrome to the activated Pfr form.
Nature, 463, 2010
2LB9
  • Download 2lb9
  • View 2lb9
Molmil generated image of 2lb9
REFINED SOLUTION STRUCTURE OF A CYANOBACTERIAL PHYTOCHROME GAF DOMAIN IN THE RED LIGHT-ABSORBING GROUND STATE (CORRECTED PYRROLE RING PLANARITY)
Descriptor:Sensor histidine kinase, PHYCOCYANOBILIN
Authors:Cornilescu, C.C., Cornilescu, G., Ulijasz, A.T., Vierstra, R.D., Markley, J.L.
Deposit date:2011-03-23
Release date:2011-06-29
Last modified:2014-01-01
Method:SOLUTION NMR
Cite:Solution structure of a cyanobacterial phytochrome GAF domain in the red-light-absorbing ground state.
J.Mol.Biol., 383, 2008
2O9B
  • Download 2o9b
  • View 2o9b
Molmil generated image of 2o9b
CRYSTAL STRUCTURE OF BACTERIOPHYTOCHROME CHROMOPHORE BINDING DOMAIN
Descriptor:Bacteriophytochrome, 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium-2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid
Authors:Wagner, J.R., Brunzelle, J.S., Vierstra, R.D., Forest, K.T.
Deposit date:2006-12-13
Release date:2007-03-06
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:High resolution structure of deinococcus bacteriophytochrome yields new insights into phytochrome architecture and evolution.
J.Biol.Chem., 282, 2007
2O9C
  • Download 2o9c
  • View 2o9c
Molmil generated image of 2o9c
CRYSTAL STRUCTURE OF BACTERIOPHYTOCHROME CHROMOPHORE BINDING DOMAIN AT 1.45 ANGSTROM RESOLUTION
Descriptor:Bacteriophytochrome, 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium-2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid
Authors:Wagner, J.R., Brunzelle, J.S., Vierstra, R.D., Forest, K.T.
Deposit date:2006-12-13
Release date:2007-03-06
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:High resolution structure of deinococcus bacteriophytochrome yields new insights into phytochrome architecture and evolution.
J.Biol.Chem., 282, 2007
4FOF
  • Download 4fof
  • View 4fof
Molmil generated image of 4fof
CRYSTAL STRUCTURE OF THE BLUE-LIGHT ABSORBING FORM OF THE THERMOSYNECHOCOCCUS ELONGATUS PIXJ GAF-DOMAIN
Descriptor:Methyl-accepting chemotaxis protein, Phycoviolobilin, blue light-absorbing form, ...
Authors:Burgie, E.S., Walker, J.M., Phillips Jr., G.N., Vierstra, R.D.
Deposit date:2012-06-20
Release date:2013-01-16
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.416 Å)
Cite:A Photo-Labile Thioether Linkage to Phycoviolobilin Provides the Foundation for the Blue/Green Photocycles in DXCF-Cyanobacteriochromes.
Structure, 21, 2013
4GLQ
  • Download 4glq
  • View 4glq
Molmil generated image of 4glq
CRYSTAL STRUCTURE OF THE BLUE-LIGHT ABSORBING FORM OF THE THERMOSYNECHOCOCCUS ELONGATUS PIXJ GAF-DOMAIN
Descriptor:Methyl-accepting chemotaxis protein, Phycoviolobilin, blue light-absorbing form
Authors:Burgie, E.S., Walker, J.M., Phillips Jr, G.N., Vierstra, R.D.
Deposit date:2012-08-14
Release date:2013-01-16
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (1.772 Å)
Cite:A Photo-Labile Thioether Linkage to Phycoviolobilin Provides the Foundation for the Blue/Green Photocycles in DXCF-Cyanobacteriochromes.
Structure, 21, 2013
4OUR
  • Download 4our
  • View 4our
Molmil generated image of 4our
CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA PHYTOCHROME B PHOTOSENSORY MODULE
Descriptor:Phytochrome B, SULFATE ION, GLYCEROL, ...
Authors:Sethe Burgie, E., Bussell, A.N., Walker, J.M., Dubiel, K., Vierstra, R.D.
Deposit date:2014-02-18
Release date:2014-07-16
Last modified:2014-07-30
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Crystal structure of the photosensing module from a red/far-red light-absorbing plant phytochrome.
Proc.Natl.Acad.Sci.USA, 111, 2014
4Q0H
  • Download 4q0h
  • View 4q0h
Molmil generated image of 4q0h
DEINOCOCCUS RADIODURANS BPHP PAS-GAF
Descriptor:Bacteriophytochrome, CHLORIDE ION, ISOPROPYL ALCOHOL, ...
Authors:Burgie, E.S., Vierstra, R.D.
Deposit date:2014-04-02
Release date:2014-07-16
Last modified:2014-09-17
Method:X-RAY DIFFRACTION (1.157 Å)
Cite:Crystallographic and Electron Microscopic Analyses of a Bacterial Phytochrome Reveal Local and Global Rearrangements during Photoconversion.
J.Biol.Chem., 289, 2014
4Q0I
  • Download 4q0i
  • View 4q0i
Molmil generated image of 4q0i
DEINOCOCCUS RADIODURANS BPHP PAS-GAF D207A MUTANT
Descriptor:Bacteriophytochrome, ISOPROPYL ALCOHOL, 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium-2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid
Authors:Burgie, E.S., Vierstra, R.D.
Deposit date:2014-04-02
Release date:2014-07-16
Last modified:2014-09-17
Method:X-RAY DIFFRACTION (1.744 Å)
Cite:Crystallographic and Electron Microscopic Analyses of a Bacterial Phytochrome Reveal Local and Global Rearrangements during Photoconversion.
J.Biol.Chem., 289, 2014
4Q0J
  • Download 4q0j
  • View 4q0j
Molmil generated image of 4q0j
DEINOCOCCUS RADIODURANS BPHP PHOTOSENSORY MODULE
Descriptor:Bacteriophytochrome, 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium-2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid
Authors:Burgie, E.S., Vierstra, R.D.
Deposit date:2014-04-02
Release date:2014-07-16
Last modified:2014-09-17
Method:X-RAY DIFFRACTION (2.747 Å)
Cite:Crystallographic and Electron Microscopic Analyses of a Bacterial Phytochrome Reveal Local and Global Rearrangements during Photoconversion.
J.Biol.Chem., 289, 2014
4Y3I
  • Download 4y3i
  • View 4y3i
Molmil generated image of 4y3i
PAS-GAF FRAGMENT FROM DEINOCOCCUS RADIODURANS BPHP ASSEMBLED WITH BV - Y307S, LOW DOSE
Descriptor:Bacteriophytochrome, 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium-2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid
Authors:Li, F., Burgie, E.S., Yu, T., Heroux, A., Schatz, G.C., Vierstra, R.D., Orville, A.M.
Deposit date:2015-02-10
Release date:2015-05-20
Last modified:2017-09-06
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:X-ray radiation induces deprotonation of the bilin chromophore in crystalline D. radiodurans phytochrome.
J.Am.Chem.Soc., 137, 2015
4Y5F
  • Download 4y5f
  • View 4y5f
Molmil generated image of 4y5f
PAS-GAF FRAGMENT FROM DEINOCOCCUS RADIODURANS BPHP ASSEMBLED WITH BV - Y307S, HIGH DOSE
Descriptor:Bacteriophytochrome, 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium-2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid
Authors:Li, F., Burgie, E.S., Yu, T., Heroux, A., Schatz, G.C., Vierstra, R.D., Orville, A.M.
Deposit date:2015-02-11
Release date:2015-05-20
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:X-ray radiation induces deprotonation of the bilin chromophore in crystalline D. radiodurans phytochrome.
J.Am.Chem.Soc., 137, 2015
5C5K
  • Download 5c5k
  • View 5c5k
Molmil generated image of 5c5k
STRUCTURE OF THE PFR FORM OF A CANONICAL PHYTOCHROME
Descriptor:Bacteriophytochrome, BILIVERDINE IX ALPHA, 1,2-ETHANEDIOL, ...
Authors:Burgie, E.S., Vierstra, R.D.
Deposit date:2015-06-20
Release date:2016-02-17
Last modified:2017-09-20
Method:X-RAY DIFFRACTION (3.31 Å)
Cite:Crystal Structure of Deinococcus Phytochrome in the Photoactivated State Reveals a Cascade of Structural Rearrangements during Photoconversion.
Structure, 24, 2016
5MG0
  • Download 5mg0
  • View 5mg0
Molmil generated image of 5mg0
STRUCTURE OF PAS-GAF FRAGMENT OF DEINOCOCCUS PHYTOCHROME BY SERIAL FEMTOSECOND CRYSTALLOGRAPHY
Descriptor:Bacteriophytochrome, 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium-2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid, NICKEL (II) ION, ...
Authors:Burgie, E.S., Fuller, F.D., Gul, S., Miller, M.D., Young, I.D., Brewster, A.S., Clinger, J., Aller, P., Braeuer, P., Hutchison, C., Alonso-Mori, R., Kern, J., Yachandra, V.K., Yano, J., Sauter, N.K., Phillips Jr., G.N., Vierstra, R.D., Orville, A.M.
Deposit date:2016-11-20
Release date:2017-02-22
Last modified:2018-11-14
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Drop-on-demand sample delivery for studying biocatalysts in action at X-ray free-electron lasers.
Nat. Methods, 14, 2017
5MG1
  • Download 5mg1
  • View 5mg1
Molmil generated image of 5mg1
STRUCTURE OF THE PHOTOSENSORY MODULE OF DEINOCOCCUS PHYTOCHROME BY SERIAL FEMTOSECOND X-RAY CRYSTALLOGRAPHY
Descriptor:Bacteriophytochrome, 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium-2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid
Authors:Burgie, E.S., Fuller, F.D., Gul, S., Young, I.D., Brewster, A.S., Clinger, J., Andi, B., Stan, C., Allaire, M., Nelsen, S., Alonso-Mori, R., Phillips Jr., G.N., Sauter, N.K., Kern, J., Yachandra, V.K., Yano, J., Vierstra, R.D., Orville, A.M.
Deposit date:2016-11-20
Release date:2017-02-22
Last modified:2018-11-14
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Drop-on-demand sample delivery for studying biocatalysts in action at X-ray free-electron lasers.
Nat. Methods, 14, 2017
2M7U
  • Download 2m7u
  • View 2m7u
Molmil generated image of 2m7u
BLUE LIGHT-ABSORBING STATE OF TEPIXJ, AN ACTIVE CYANOBACTERIOCHROME DOMAIN
Descriptor:Methyl-accepting chemotaxis protein, Phycoviolobilin, blue light-absorbing form
Authors:Cornilescu, G., Cornilescu, C.C., Burgie, S.E., Walker, J.M., Markley, J.L., Ulijasz, A.T., Vierstra, R.D.
Deposit date:2013-05-01
Release date:2014-01-01
Method:SOLUTION NMR
Cite:Structural and Flexibility Variations Between the Ground and Photoactivated States of a Blue/Green Light-Absorbing Cyanobacteriochrome
To be Published
2M7V
  • Download 2m7v
  • View 2m7v
Molmil generated image of 2m7v
GREEN LIGHT-ABSORBING STATE OF TEPIXJ, AN ACTIVE CYANOBACTERIOCHROME DOMAIN
Descriptor:Methyl-accepting chemotaxis protein, PHYCOVIOLOBILIN
Authors:Cornilescu, G., Cornilescu, C.C., Burgie, S.E., Walker, J.M., Markley, J.L., Ulijasz, A.T., Vierstra, R.D.
Deposit date:2013-05-01
Release date:2014-01-01
Method:SOLUTION NMR
Cite:Structural and Flexibility Variations Between the Ground and Photoactivated States of a Blue/Green Light-Absorbing Cyanobacteriochrome
To be Published
1UBI
  • Download 1ubi
  • View 1ubi
Molmil generated image of 1ubi
SYNTHETIC STRUCTURAL AND BIOLOGICAL STUDIES OF THE UBIQUITIN SYSTEM. PART 1
Descriptor:UBIQUITIN
Authors:Alexeev, D., Bury, S.M., Turner, M.A., Ogunjobi, O.M., Muir, T.W., Ramage, R., Sawyer, L.
Deposit date:1994-02-03
Release date:1994-05-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Synthetic, structural and biological studies of the ubiquitin system: the total chemical synthesis of ubiquitin.
Biochem.J., 299, 1994
1UBQ
  • Download 1ubq
  • View 1ubq
Molmil generated image of 1ubq
STRUCTURE OF UBIQUITIN REFINED AT 1.8 ANGSTROMS RESOLUTION
Descriptor:UBIQUITIN
Authors:Vijay-Kumar, S., Bugg, C.E., Cook, W.J.
Deposit date:1987-01-02
Release date:1987-04-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of ubiquitin refined at 1.8 A resolution.
J.Mol.Biol., 194, 1987