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3RKH
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BU of 3rkh by Molmil
Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase in a complex with nitrite (full occupancy)
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, CALCIUM ION, Eight-heme nitrite reductase, ...
Authors:Trofimov, A.A, Polyakov, K.M, Tikhonova, T.V, Tikhonov, A.V, Dorovatovskii, P.V, Popov, V.O.
Deposit date:2011-04-18
Release date:2011-06-15
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Covalent modifications of the catalytic tyrosine in octahaem cytochrome c nitrite reductase and their effect on the enzyme activity.
Acta Crystallogr.,Sect.D, 68, 2012
4Q4U
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BU of 4q4u by Molmil
TvNiR in complex with sulfite, low dose data set
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, ...
Authors:Lazarenko, V.A, Polyakov, K.M, Trofimov, A.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O.
Deposit date:2014-04-15
Release date:2014-09-03
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:X-ray-induced changes in the active site structure of octaheme cytochrome c nitrite reductase and its substrate complexes
to be published
4Q0T
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BU of 4q0t by Molmil
Free form of TvNiR, low dose data set
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, CITRIC ACID, ...
Authors:Lazarenko, V.A, Polyakov, K.M, Trofimov, A.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O.
Deposit date:2014-04-02
Release date:2014-09-10
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:X-ray-induced changes in the active site structure of octaheme cytochrome c nitrite reductase and its substrate complexes
TO BE PUBLISHED
4Q5B
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BU of 4q5b by Molmil
TvNiR in complex with sulfite, high dose data set
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, CALCIUM ION, ...
Authors:Lazarenko, V.A, Polyakov, K.M, Trofimov, A.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O.
Deposit date:2014-04-16
Release date:2014-09-10
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:X-ray-induced changes in the active site structure of octaheme cytochrome c nitrite reductase and its substrate complexes
To be Published
4Q17
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BU of 4q17 by Molmil
Free form of TvNiR, middle dose data set
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, CITRIC ACID, ...
Authors:Lazarenko, V.A, Polyakov, K.M, Trofimov, A.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O.
Deposit date:2014-04-03
Release date:2014-09-10
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:X-ray-induced changes in the active site structure of octaheme cytochrome c nitrite reductase and its substrate complexes
To be published
4Q1O
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BU of 4q1o by Molmil
Free form of TvNiR, high dose data set
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, CITRIC ACID, ...
Authors:Lazarenko, V.A, Polyakov, K.M, Trofimov, A.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O.
Deposit date:2014-04-04
Release date:2014-09-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:X-ray-induced changes in the active site structure of octaheme cytochrome c nitrite reductase and its substrate complexes
To be Published
4Q5C
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BU of 4q5c by Molmil
TvNiR in complex with sulfite, middle dose data set
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, ...
Authors:Lazarenko, V.A, Polyakov, K.M, Trofimov, A.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O.
Deposit date:2014-04-16
Release date:2014-09-03
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:X-ray-induced changes in the active site structure of octaheme cytochrome c nitrite reductase and its substrate complexes
To be Published
4HA4
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BU of 4ha4 by Molmil
Structure of beta-glycosidase from Acidilobus saccharovorans in complex with glycerol
Descriptor: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, Beta-galactosidase, GLYCEROL, ...
Authors:Trofimov, A.A, Polyakov, K.M, Tikhonov, A.V, Bezsudnova, E.Y, Dorovatovskii, P.V, Gumerov, V.M, Ravin, N.V, Skryabin, K.G, Popov, V.O.
Deposit date:2012-09-25
Release date:2012-10-10
Last modified:2013-09-04
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:Structures of beta-glycosidase from Acidilobus saccharovorans in complexes with tris and glycerol.
Dokl.Biochem.Biophys., 449
4HA3
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BU of 4ha3 by Molmil
Structure of beta-glycosidase from Acidilobus saccharovorans in complex with Tris
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Beta-galactosidase, DI(HYDROXYETHYL)ETHER, ...
Authors:Trofimov, A.A, Polyakov, K.M, Tikhonov, A.V, Bezsudnova, E.Y, Dorovatovskii, P.V, Gumerov, V.M, Ravin, N.V, Skryabin, K.G, Popov, V.O.
Deposit date:2012-09-25
Release date:2012-10-10
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:Structures of beta-glycosidase from Acidilobus saccharovorans in complexes with tris and glycerol.
Dokl.Biochem.Biophys., 449
4L3X
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BU of 4l3x by Molmil
Nitrite complex of TvNiR, first middle dose data set
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, Eight-heme nitrite reductase, ...
Authors:Trofimov, A.A, Polyakov, K.M, Lazarenko, V.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O.
Deposit date:2013-06-07
Release date:2014-06-11
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Investigation of the X-ray-induced nitrite reduction catalysed by cytochrome c nitrite reductase from the bacterium Thioalkalivibrio nitratireducens
To be Published
4L3Z
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BU of 4l3z by Molmil
Nitrite complex of TvNiR, second middle dose data set
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, Eight-heme nitrite reductase, ...
Authors:Trofimov, A.A, Polyakov, K.M, Lazarenko, V.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O.
Deposit date:2013-06-07
Release date:2014-06-11
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Investigation of the X-ray-induced nitrite reduction catalysed by cytochrome c nitrite reductase from the bacterium Thioalkalivibrio nitratireducens
To be Published
4L38
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BU of 4l38 by Molmil
Nitrite complex of TvNiR, low dose data set
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, Eight-heme nitrite reductase, ...
Authors:Trofimov, A.A, Polyakov, K.M, Lazarenko, V.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O.
Deposit date:2013-06-05
Release date:2014-07-16
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Investigation of the X-ray-induced nitrite reduction catalysed by cytochrome c nitrite reductase from the bacterium Thioalkalivibrio nitratireducens
To be Published
4L3Y
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BU of 4l3y by Molmil
Nitrite complex of TvNiR, high dose data set (NO complex)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, Eight-heme nitrite reductase, ...
Authors:Trofimov, A.A, Polyakov, K.M, Lazarenko, V.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O.
Deposit date:2013-06-07
Release date:2014-06-11
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Investigation of the X-ray-induced nitrite reduction catalysed by cytochrome c nitrite reductase from the bacterium Thioalkalivibrio nitratireducens
To be Published
3UU9
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BU of 3uu9 by Molmil
Structure of the free TvNiRb form of Thioalkalivibrio nitratireducens cytochrome c nitrite reductase
Descriptor: CALCIUM ION, Eight-heme nitrite reductase, HEME C, ...
Authors:Trofimov, A.A, Polyakov, K.M, Tikhonova, T.V, Tikhonov, A.V, Dorovatovskii, P.V, Popov, V.O.
Deposit date:2011-11-28
Release date:2012-01-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Covalent modifications of the catalytic tyrosine in octahaem cytochrome c nitrite reductase and their effect on the enzyme activity.
Acta Crystallogr.,Sect.D, 68, 2012
3LGQ
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BU of 3lgq by Molmil
Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase in complex with sulfite (modified Tyr-303)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, ...
Authors:Trofimov, A.A, Polyakov, K.M, Boyko, K.M, Filimonenkov, A.A, Tikhonova, T.V, Lamzin, V.S, Bourenkov, G.P, Popov, V.O.
Deposit date:2010-01-21
Release date:2011-02-16
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Covalent modifications of the catalytic tyrosine in octahaem cytochrome c nitrite reductase and their effect on the enzyme activity.
Acta Crystallogr.,Sect.D, 68, 2012
3LG1
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BU of 3lg1 by Molmil
Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase reduced by sodium borohydride (in complex with sulfite)
Descriptor: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, CALCIUM ION, Eight-heme nitrite reductase, ...
Authors:Trofimov, A.A, Polyakov, K.M, Boyko, K.M, Filimonenkov, A.A, Dorovatovsky, P.V, Tikhonova, T.V, Popov, V.O.
Deposit date:2010-01-19
Release date:2010-12-29
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Covalent modifications of the catalytic tyrosine in octahaem cytochrome c nitrite reductase and their effect on the enzyme activity.
Acta Crystallogr.,Sect.D, 68, 2012
3MMO
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BU of 3mmo by Molmil
Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase in complex with cyanide
Descriptor: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, ...
Authors:Trofimov, A.A, Polyakov, K.M, Boyko, K.M, Tikhonova, T.V, Lamzin, V.S, Bourenkov, G.P, Popov, V.O.
Deposit date:2010-04-20
Release date:2010-09-29
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structures of complexes of octahaem cytochrome c nitrite reductase from Thioalkalivibrio nitratireducens with sulfite and cyanide.
Acta Crystallogr.,Sect.D, 66, 2010
3FO3
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BU of 3fo3 by Molmil
Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase reduced by sodium dithionite (sulfite complex)
Descriptor: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, ...
Authors:Trofimov, A.A, Polyakov, K.M, Boyko, K.M, Slutsky, A, Tikhonova, T.V, Antipov, A.N, Zvyagilskaya, R.A, Popov, A.N, Lamzin, V.S, Bourenkov, G.P, Popov, V.O.
Deposit date:2008-12-27
Release date:2009-12-29
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structures of complexes of octahaem cytochrome c nitrite reductase from Thioalkalivibrio nitratireducens with sulfite and cyanide
Acta Crystallogr.,Sect.D, 66, 2010
3TTB
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BU of 3ttb by Molmil
Structure of the Thioalkalivibrio paradoxus cytochrome c nitrite reductase in complex with sulfite
Descriptor: CALCIUM ION, COBALT (II) ION, Eight-heme nitrite reductase, ...
Authors:Polyakov, K.M, Trofimov, A.A, Tikhonova, T.V, Tikhonov, A.V, Dorovatovskii, P.V, Popov, V.O.
Deposit date:2011-09-14
Release date:2011-10-05
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Comparative structural and functional analysis of two octaheme nitrite reductases from closely related Thioalkalivibrio species.
Febs J., 279, 2012
3SXQ
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BU of 3sxq by Molmil
Structure of a hexameric multiheme c nitrite reductase from the extremophile bacterium Thiolkalivibrio paradoxus
Descriptor: CALCIUM ION, CHLORIDE ION, COBALT (II) ION, ...
Authors:Polyakov, K.M, Trofimov, A.A, Tikhonova, T.V, Tikhonov, A.V, Boyko, K.M, Popov, V.O.
Deposit date:2011-07-15
Release date:2012-09-26
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Comparative structural and functional analysis of two octaheme nitrite reductases from closely related Thioalkalivibrio species.
Febs J., 279, 2012
2OT4
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BU of 2ot4 by Molmil
Structure of a hexameric multiheme c nitrite reductase from the extremophile bacterium Thiolkalivibrio nitratireducens
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, ...
Authors:Polyakov, K.M, Boyko, K.M, Slutsky, A, Tikhonova, T.V, Antipov, A.N, Zvyagilskaya, R.A, Popov, A.N, Lamzin, V.S, Bourenkov, G.P, Popov, V.O.
Deposit date:2007-02-07
Release date:2008-04-08
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:High-resolution structural analysis of a novel octaheme cytochrome c nitrite reductase from the haloalkaliphilic bacterium Thioalkalivibrio nitratireducens.
J.Mol.Biol., 389, 2009
3SCE
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BU of 3sce by Molmil
Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase with a covalent bond between the CE1 atom of Tyr303 and the CG atom of Gln360 (TvNiRb)
Descriptor: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, CALCIUM ION, Eight-heme nitrite reductase, ...
Authors:Trofimov, A.A, Polyakov, K.M, Boyko, K.M, Tikhonova, T.V, Popov, V.O.
Deposit date:2011-06-07
Release date:2011-07-06
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Covalent modifications of the catalytic tyrosine in octahaem cytochrome c nitrite reductase and their effect on the enzyme activity.
Acta Crystallogr.,Sect.D, 68, 2012

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