7BR5
 
 | Lysozyme-sugar complex in H2O | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, Lysozyme C, ... | Authors: | Tanaka, I, Chatake, T. | Deposit date: | 2020-03-26 | Release date: | 2021-03-10 | Last modified: | 2024-11-13 | Method: | X-RAY DIFFRACTION (1 Å) | Cite: | Recent structural insights into the mechanism of lysozyme hydrolysis. Acta Crystallogr D Struct Biol, 77, 2021
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7DEQ
 
 | Lysozyme-sugar complex in D2O | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, Lysozyme C, ... | Authors: | Tanaka, I, Chatake, T. | Deposit date: | 2020-11-04 | Release date: | 2021-03-10 | Last modified: | 2024-11-13 | Method: | X-RAY DIFFRACTION (1.03 Å) | Cite: | Recent structural insights into the mechanism of lysozyme hydrolysis. Acta Crystallogr D Struct Biol, 77, 2021
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7DER
 
 | Lysozyme alone in H2O | Descriptor: | CHLORIDE ION, Lysozyme C, SODIUM ION | Authors: | Tanaka, I, Chatake, T. | Deposit date: | 2020-11-04 | Release date: | 2021-03-10 | Last modified: | 2024-10-30 | Method: | X-RAY DIFFRACTION (1.03 Å) | Cite: | Recent structural insights into the mechanism of lysozyme hydrolysis. Acta Crystallogr D Struct Biol, 77, 2021
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2ZY6
 
 | Crystal structure of a truncated tRNA, TPHE39A | Descriptor: | CALCIUM ION, CHLORIDE ION, MAGNESIUM ION, ... | Authors: | Tanaka, I, Yao, M, Tanaka, Y, Kitago, Y, Ymagata, S. | Deposit date: | 2009-01-14 | Release date: | 2009-06-30 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.75 Å) | Cite: | Deduced RNA binding mechanism of ThiI based on structural and binding analyses of a minimal RNA ligand Rna, 15, 2009
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3RXS
 
 | Crystal structure of Trypsin complexed with (3-methoxyphenyl)methanamine (F04 and A06, cocktail experiment) | Descriptor: | 1-(3-methoxyphenyl)methanamine, CALCIUM ION, Cationic trypsin, ... | Authors: | Yamane, J, Yao, M, Zhou, Y, Tanaka, I. | Deposit date: | 2011-05-10 | Release date: | 2011-08-24 | Last modified: | 2024-11-13 | Method: | X-RAY DIFFRACTION (1.74 Å) | Cite: | In-crystal affinity ranking of fragment hit compounds reveals a relationship with their inhibitory activities J.Appl.Crystallogr., 44, 2011
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4WJ3
 
 | Crystal structure of the asparagine transamidosome from Pseudomonas aeruginosa | Descriptor: | 76mer-tRNA, Aspartate--tRNA(Asp/Asn) ligase, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, ... | Authors: | Suzuki, T, Nakamura, A, Kato, K, Tanaka, I, Yao, M. | Deposit date: | 2014-09-29 | Release date: | 2014-12-31 | Last modified: | 2024-10-09 | Method: | X-RAY DIFFRACTION (3.705 Å) | Cite: | Structure of the Pseudomonas aeruginosa transamidosome reveals unique aspects of bacterial tRNA-dependent asparagine biosynthesis Proc.Natl.Acad.Sci.USA, 112, 2015
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1UD9
 
 | Crystal Structure of Proliferating Cell Nuclear Antigen (PCNA) Homolog From Sulfolobus tokodaii | Descriptor: | DNA polymerase sliding clamp A, ZINC ION | Authors: | Tanabe, E, Yasutake, Y, Tanaka, Y, Yao, M, Tsumoto, K, Kumagai, I, Tanaka, I. | Deposit date: | 2003-04-28 | Release date: | 2004-06-15 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.68 Å) | Cite: | Crystal Structure of Proliferating Cell Nuclear Antigen (PCNA) Homolog From Sulfolobus tokodaii To be published
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4P1Y
 
 | Crystal structure of staphylococcal gamma-hemolysin prepore | Descriptor: | Gamma-hemolysin component A, Gamma-hemolysin component B | Authors: | Yamashita, D, Tanaka, Y, Tanaka, I, Yao, M. | Deposit date: | 2014-02-28 | Release date: | 2014-10-01 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.992 Å) | Cite: | Molecular basis of transmembrane beta-barrel formation of staphylococcal pore-forming toxins. Nat Commun, 5, 2014
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4P1X
 
 | Crystal structure of staphylococcal LUK prepore | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, Gamma-hemolysin component B, Gamma-hemolysin component C | Authors: | Yamashita, D, Tanaka, Y, Tanaka, I, Yao, M. | Deposit date: | 2014-02-28 | Release date: | 2014-10-01 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Molecular basis of transmembrane beta-barrel formation of staphylococcal pore-forming toxins. Nat Commun, 5, 2014
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1UCG
 
 | Crystal structure of Ribonuclease MC1 N71T mutant | Descriptor: | MANGANESE (II) ION, Ribonuclease MC | Authors: | Suzuki, A, Numata, T, Yao, M, Tanaka, I, Kimura, M. | Deposit date: | 2003-04-14 | Release date: | 2003-04-29 | Last modified: | 2024-11-06 | Method: | X-RAY DIFFRACTION (1.65 Å) | Cite: | Crystal structures of the ribonuclease MC1 mutants N71T and N71S in complex with 5'-GMP: structural basis for alterations in substrate specificity Biochemistry, 42, 2003
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7FCW
 
 | X-ray structure of H2O-solvent lysozyme | Descriptor: | CHLORIDE ION, Lysozyme C, NICKEL (II) ION | Authors: | Chatake, T, Tanaka, I, Kusaka, K, Fujiwara, S. | Deposit date: | 2021-07-15 | Release date: | 2022-04-06 | Last modified: | 2024-10-09 | Method: | X-RAY DIFFRACTION (1.43 Å) | Cite: | Protonation states of hen egg-white lysozyme observed using D/H contrast neutron crystallography. Acta Crystallogr D Struct Biol, 78, 2022
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7FCU
 
 | X-ray structure of D2O-solvent lysozyme | Descriptor: | CHLORIDE ION, Lysozyme C, NICKEL (II) ION | Authors: | Chatake, T, Tanaka, I, Kusaka, K, Fujiwara, S. | Deposit date: | 2021-07-15 | Release date: | 2022-04-13 | Last modified: | 2024-11-06 | Method: | X-RAY DIFFRACTION (1.42 Å) | Cite: | Protonation states of hen egg-white lysozyme observed using D/H contrast neutron crystallography. Acta Crystallogr D Struct Biol, 78, 2022
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3IS1
 
 | Crystal structure of functional region of UafA from Staphylococcus saprophyticus in C2 form at 2.45 angstrom resolution | Descriptor: | GLYCEROL, Uro-adherence factor A | Authors: | Tanaka, Y, Matsuoka, E, Shouji, Y, Kuroda, M, Tanaka, I, Yao, M. | Deposit date: | 2009-08-24 | Release date: | 2010-09-08 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.45 Å) | Cite: | Crystal structure of the functional region of Uro-adherence factor A from Staphylococcus saprophyticus reveals participation of the B domain in ligand binding Protein Sci., 20, 2011
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3IS0
 
 | Crystal structure of functional region of UafA from Staphylococcus saprophyticus in the presence of cholesterol | Descriptor: | GLYCEROL, Uro-adherence factor A | Authors: | Tanaka, Y, Shouji, Y, Matsuoka, E, Kuroda, M, Tanaka, I, Yao, M. | Deposit date: | 2009-08-24 | Release date: | 2010-09-08 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.75 Å) | Cite: | Crystal Structure of Functional Region of UafA from Staphylococcus saprophyticus To be Published
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3IRP
 
 | Crystal structure of functional region of UafA from Staphylococcus saprophyticus at 1.50 angstrom resolution | Descriptor: | GLYCEROL, POTASSIUM ION, Uro-adherence factor A | Authors: | Tanaka, Y, Shouji, Y, Matsuoka, E, Kuroda, M, Tanaka, I, Yao, M. | Deposit date: | 2009-08-24 | Release date: | 2010-09-08 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Crystal structure of the functional region of Uro-adherence factor A from Staphylococcus saprophyticus reveals participation of the B domain in ligand binding Protein Sci., 20, 2011
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3IRZ
 
 | Crystal structure of functional region of UafA from Staphylococcus saprophyticus in P212121 form | Descriptor: | GLYCEROL, Uro-adherence factor A | Authors: | Tanaka, Y, Shouji, Y, Matsuoka, E, Kuroda, M, Tanaka, I, Yao, M. | Deposit date: | 2009-08-24 | Release date: | 2010-09-08 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Crystal structure of the functional region of Uro-adherence factor A from Staphylococcus saprophyticus reveals participation of the B domain in ligand binding Protein Sci., 20, 2011
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3W9Z
 
 | Crystal structure of DusC | Descriptor: | FLAVIN MONONUCLEOTIDE, tRNA-dihydrouridine synthase C | Authors: | Chen, M, Yu, J, Tanaka, Y, Tanaka, I, Yao, M. | Deposit date: | 2013-04-19 | Release date: | 2013-07-31 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Structure of dihydrouridine synthase C (DusC) from Escherichia coli Acta Crystallogr.,Sect.F, 69, 2013
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1ODD
 
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3WY8
 
 | Crystal Structure of Protease Anisep from Arthrobacter Nicotinovorans | Descriptor: | Serine protease | Authors: | Sone, T, Haraguchi, Y, Kuwahara, A, Ose, T, Takano, M, Abe, A, Tanaka, M, Tanaka, I, Asano, K. | Deposit date: | 2014-08-20 | Release date: | 2015-08-26 | Last modified: | 2024-10-30 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Structural characterization reveals the keratinolytic activity of an arthrobacter nicotinovorans protease. Protein Pept.Lett., 22, 2015
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3FE0
 
 | X-ray crystal structure of wild type human lysozyme in D2O | Descriptor: | Lysozyme C | Authors: | Chiba-Kamoshida, K, Matsui, T, Chatake, T, Ohhara, T, Ostermann, A, Tanaka, I, Yutani, K, Niimura, N. | Deposit date: | 2008-11-27 | Release date: | 2009-12-08 | Last modified: | 2024-10-30 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Site-specific softening of peptide bonds by localized deuterium observed by neutron crystallography of human lysozyme hydrogen To be Published
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3FHP
 
 | A neutron crystallographic analysis of a porcine 2Zn insulin at 2.0 A resolution | Descriptor: | Insulin, ZINC ION | Authors: | Iwai, W, Kurihara, K, Yamada, T, Kobayashi, Y, Ohnishi, Y, Tanaka, I, Takahashi, H, Niimura, N. | Deposit date: | 2008-12-09 | Release date: | 2009-10-20 | Last modified: | 2024-11-20 | Method: | NEUTRON DIFFRACTION (2 Å) | Cite: | A neutron crystallographic analysis of T6 porcine insulin at 2.1 A resolution Acta Crystallogr.,Sect.D, 65, 2009
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1DPT
 
 | D-DOPACHROME TAUTOMERASE | Descriptor: | D-DOPACHROME TAUTOMERASE | Authors: | Sugimoto, H, Taniguchi, M, Nakagawa, A, Tanaka, I. | Deposit date: | 1998-05-11 | Release date: | 1999-03-30 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (1.54 Å) | Cite: | Crystal structure of human D-dopachrome tautomerase, a homologue of macrophage migration inhibitory factor, at 1.54 A resolution. Biochemistry, 38, 1999
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1UC2
 
 | Hypothetical Extein Protein of PH1602 from Pyrococcus horikoshii | Descriptor: | SULFATE ION, beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose, hypothetical protein PH1602 | Authors: | Okada, C, Maegawa, Y, Yao, M, Tanaka, I. | Deposit date: | 2003-04-08 | Release date: | 2004-05-04 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.15 Å) | Cite: | Crystal structure of an RtcB homolog protein (PH1602-extein protein) from Pyrococcus horikoshii reveals a novel fold Proteins, 63, 2006
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1UCD
 
 | Crystal structure of Ribonuclease MC1 from bitter gourd seeds complexed with 5'-UMP | Descriptor: | Ribonuclease MC, URACIL, URIDINE-5'-MONOPHOSPHATE | Authors: | Suzuki, A, Numata, T, Yao, M, Kimura, M, Tanaka, I. | Deposit date: | 2003-04-10 | Release date: | 2004-05-18 | Last modified: | 2024-11-06 | Method: | X-RAY DIFFRACTION (1.3 Å) | Cite: | Structure of RNase MC1 from bitter gourd seeds in complex with 5'UMP To be published
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1UC3
 
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