2ZY6 | | CRYSTAL STRUCTURE OF A TRUNCATED TRNA, TPHE39A | | Descriptor: | phenylalanyl transfer RNA, MAGNESIUM ION, CHLORIDE ION, ... | | Authors: | Tanaka, I., Yao, M., Tanaka, Y., Kitago, Y., Ymagata, S. | | Deposit date: | 2009-01-14 | | Release date: | 2009-06-30 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (1.75 Å) | | Cite: | Deduced RNA binding mechanism of ThiI based on structural and binding analyses of a minimal RNA ligand
Rna, 15, 2009
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1J08 | | CRYSTAL STRUCTURE OF GLUTAREDOXIN-LIKE PROTEIN FROM PYROCOCCUS HORIKOSHII | | Descriptor: | glutaredoxin-like protein | | Authors: | Tanaka, Y., Tanabe, E., Tsumoto, K., Kumagai, I., Yao, M., Tanaka, I. | | Deposit date: | 2002-11-11 | | Release date: | 2003-05-11 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2.3 Å) | | Cite: | Protein disulfide isomerase from hyperthermophile as an additives of refolding of an immunoglobulin-folded protein
To be Published
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1J2V | | CRYSTAL STRUCTURE OF CUTA1 FROM PYROCOCCUS HORIKOSHII | | Descriptor: | 102AA long hypothetical periplasmic divalent cation tolerance protein CUTA | | Authors: | Tanaka, Y., Sakai, N., Yasutake, Y., Yao, M., Tsumoto, K., Kumagai, I., Tanaka, I. | | Deposit date: | 2003-01-11 | | Release date: | 2004-01-13 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | Structural implications for heavy metal-induced reversible assembly and aggregation of a protein: the case of Pyrococcus horikoshii CutA.
Febs Lett., 556, 2004
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1UD9 | | CRYSTAL STRUCTURE OF PROLIFERATING CELL NUCLEAR ANTIGEN (PCNA) HOMOLOG FROM SULFOLOBUS TOKODAII | | Descriptor: | DNA polymerase sliding clamp A, ZINC ION | | Authors: | Tanabe, E., Yasutake, Y., Tanaka, Y., Yao, M., Tsumoto, K., Kumagai, I., Tanaka, I. | | Deposit date: | 2003-04-28 | | Release date: | 2004-06-15 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (1.68 Å) | | Cite: | Crystal Structure of Proliferating Cell Nuclear Antigen (PCNA) Homolog From Sulfolobus tokodaii
To be published
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1UKU | | CRYSTAL STRUCTURE OF PYROCOCCUS HORIKOSHII CUTA1 COMPLEXED WITH CU2+ | | Descriptor: | periplasmic divalent cation tolerance protein CutA, COPPER (II) ION | | Authors: | Tanaka, Y., Yasutake, Y., Yao, M., Sakai, N., Tanaka, I., Tsumoto, K., Kumagai, I. | | Deposit date: | 2003-09-01 | | Release date: | 2004-01-13 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (1.45 Å) | | Cite: | Structural implications for heavy metal-induced reversible assembly and aggregation of a protein: the case of Pyrococcus horikoshii CutA.
Febs Lett., 556, 2004
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1UMJ | | CRYSTAL STRUCTURE OF PYROCOCCUS HORIKOSHII CUTA IN THE PRESENCE OF 3M GUANIDINE HYDROCHLORIDE | | Descriptor: | periplasmic divalent cation tolerance protein CutA, GUANIDINE | | Authors: | Tanaka, Y., Tsumoto, K., Yasutake, Y., Sakai, N., Yao, M., Tanaka, I., Kumagai, I. | | Deposit date: | 2003-10-02 | | Release date: | 2004-10-05 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (1.6 Å) | | Cite: | Structural evidence for guanidine-protein side chain interactions: crystal structure of CutA from Pyrococcus horikoshii in 3M guanidine hydrochloride
Biochem.Biophys.Res.Commun., 323, 2004
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1VBF | | CRYSTAL STRUCTURE OF PROTEIN L-ISOASPARTATE O-METHYLTRANSFERASE HOMOLOGUE FROM SULFOLOBUS TOKODAII | | Descriptor: | 231aa long hypothetical protein-L-isoaspartate O-methyltransferase | | Authors: | Tanaka, Y., Tsumoto, K., Yasutake, Y., Umetsu, M., Yao, M., Tanaka, I., Fukada, H., Kumagai, I. | | Deposit date: | 2004-02-25 | | Release date: | 2004-08-10 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2.8 Å) | | Cite: | How Oligomerization Contributes to the Thermostability of an Archaeon Protein: PROTEIN L-ISOASPARTYL-O-METHYLTRANSFERASE FROM SULFOLOBUS TOKODAII
J.Biol.Chem., 279, 2004
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1WOZ | | CRYSTAL STRUCTURE OF UNCHARACTERIZED PROTEIN ST1454 FROM SULFOLOBUS TOKODAII | | Descriptor: | 177aa long conserved hypothetical protein (ST1454), (20S)-2,5,8,11,14,17-HEXAMETHYL-3,6,9,12,15,18-HEXAOXAHENICOSANE-1,20-DIOL | | Authors: | Sasaki, T., Tanaka, Y., Yasutake, Y., Yao, M., Tanaka, I., Tsumoto, K., Kumagai, I. | | Deposit date: | 2004-08-27 | | Release date: | 2005-10-04 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (1.94 Å) | | Cite: | Crystal structure of the uncharacterized protein ST1454 from Sulfolobus tokodaii.
To be Published
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1WSC | | CRYSTAL STRUCTURE OF ST0229, FUNCTION UNKNOWN PROTEIN FROM SULFOLOBUS TOKODAII | | Descriptor: | Hypothetical protein ST0229 | | Authors: | Murayama, T., Tanaka, Y., Sasaki, T., Yasutake, Y., Yao, M., Tsumoto, K., Tanaka, I., Kumagai, I. | | Deposit date: | 2004-11-05 | | Release date: | 2005-11-08 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2.45 Å) | | Cite: | Crystal structure of ST0229, function unknown protein from Sulfolobus tokodaii
To be Published
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1WVT | | CRYSTAL STRUCTURE OF UNCHARACTERIZED PROTEIN ST2180 FROM SULFOLOBUS TOKODAII | | Descriptor: | hypothetical protein ST2180 | | Authors: | Sasaki, T., Tanaka, Y., Yasutake, Y., Tsumoto, K., Tanaka, I., Kumagai, I. | | Deposit date: | 2004-12-27 | | Release date: | 2006-01-03 | | Last modified: | 2013-05-01 | | Method: | X-RAY DIFFRACTION (2.3 Å) | | Cite: | Molecular properties of two proteins homologous to PduO-type ATP:cob(I)alamin adenosyltransferase from Sulfolobus tokodaii
Proteins, 68, 2007
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2DGD | | CRYSTAL STRUCTURE OF ST0656, A FUNCTION UNKNOWN PROTEIN FROM SULFOLOBUS TOKODAII | | Descriptor: | 223aa long hypothetical arylmalonate decarboxylase, GLYCEROL | | Authors: | Tanaka, Y., Sasaki, T., Tanabe, E., Yao, M., Tanaka, I., Kumagai, I., Tsumoto, K. | | Deposit date: | 2006-03-10 | | Release date: | 2007-03-13 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2.9 Å) | | Cite: | Crystal structure of ST0656, a function unknown protein from Sulfolobus tokodaii
To be Published
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2E7D | | CRYSTAL STRUCTURE OF A NEAT DOMAIN FROM STAPHYLOCOCCUS AUREUS | | Descriptor: | Hypothetical protein IsdH, SULFATE ION, ACETATE ION, ... | | Authors: | Suenaga, A., Tanaka, Y., Yao, M., Kumagai, I., Tanaka, I., Tsumoto, K. | | Deposit date: | 2007-01-09 | | Release date: | 2008-01-22 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2.2 Å) | | Cite: | Structural basis for multimeric heme complexation through a specific protein-heme interaction: the case of the third neat domain of IsdH from Staphylococcus aureus
J.Biol.Chem., 283, 2008
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1J1F | | CRYSTAL STRUCTURE OF THE RNASE MC1 MUTANT N71T IN COMPLEX WITH 5'-GMP | | Descriptor: | RIBONUCLEASE MC1, GUANOSINE-5'-MONOPHOSPHATE | | Authors: | Numata, T., Suzuki, A., Kakuta, Y., Kimura, K., Yao, M., Tanaka, I., Yoshida, Y., Ueda, T., Kimura, M. | | Deposit date: | 2002-12-03 | | Release date: | 2003-05-20 | | Last modified: | 2017-10-04 | | Method: | X-RAY DIFFRACTION (1.6 Å) | | Cite: | Crystal Structures of the Ribonuclease MC1 Mutants N71T and N71S in Complex with 5'-GMP: Structural Basis for Alterations in Substrate Specificity
Biochemistry, 42, 2003
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1J1G | | CRYSTAL STRUCTURE OF THE RNASE MC1 MUTANT N71S IN COMPLEX WITH 5'-GMP | | Descriptor: | Ribonuclease MC1, GUANOSINE-5'-MONOPHOSPHATE | | Authors: | Numata, T., Suzuki, A., Kakuta, Y., Kimura, K., Yao, M., Tanaka, I., Yoshida, Y., Ueda, T., Kimura, M. | | Deposit date: | 2002-12-04 | | Release date: | 2003-05-20 | | Last modified: | 2017-10-04 | | Method: | X-RAY DIFFRACTION (1.6 Å) | | Cite: | Crystal Structures of the Ribonuclease MC1 Mutants N71T and N71S in Complex with 5'-GMP: Structural Basis for Alterations in Substrate Specificity
Biochemistry, 42, 2003
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3W9Z | | CRYSTAL STRUCTURE OF DUSC | | Descriptor: | tRNA-dihydrouridine synthase C, FLAVIN MONONUCLEOTIDE | | Authors: | Chen, M., Yu, J., Tanaka, Y., Tanaka, I., Yao, M. | | Deposit date: | 2013-04-19 | | Release date: | 2013-07-31 | | Last modified: | 2017-11-22 | | Method: | X-RAY DIFFRACTION (2.1 Å) | | Cite: | Structure of dihydrouridine synthase C (DusC) from Escherichia coli
Acta Crystallogr.,Sect.F, 69, 2013
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1DPT | | D-DOPACHROME TAUTOMERASE | | Descriptor: | D-DOPACHROME TAUTOMERASE | | Authors: | Sugimoto, H., Taniguchi, M., Nakagawa, A., Tanaka, I. | | Deposit date: | 1998-05-11 | | Release date: | 1999-03-30 | | Last modified: | 2018-06-06 | | Method: | X-RAY DIFFRACTION (1.54 Å) | | Cite: | Crystal structure of human D-dopachrome tautomerase, a homologue of macrophage migration inhibitory factor, at 1.54 A resolution.
Biochemistry, 38, 1999
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1IXL | | CRYSTAL STRUCTURE OF UNCHARACTERIZED PROTEIN PH1136 FROM PYROCOCCUS HORIKOSHII | | Descriptor: | hypothetical protein PH1136 | | Authors: | Tajika, Y., Sakai, N., Tanaka, Y., Yao, M., Watanabe, N., Tanaka, I. | | Deposit date: | 2002-06-27 | | Release date: | 2003-09-09 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (1.94 Å) | | Cite: | Crystal structure of conserved protein PH1136 from Pyrococcus horikoshii.
Proteins, 55, 2004
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1J1W | | CRYSTAL STRUCTURE OF THE MONOMERIC ISOCITRATE DEHYDROGENASE IN COMPLEX WITH NADP+ | | Descriptor: | Isocitrate Dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | | Authors: | Yasutake, Y., Watanabe, S., Yao, M., Takada, Y., Fukunaga, N., Tanaka, I. | | Deposit date: | 2002-12-19 | | Release date: | 2003-09-23 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (3.2 Å) | | Cite: | Crystal Structure of the Monomeric Isocitrate Dehydrogenase in the Presence of NADP+
J.Biol.Chem., 278, 2003
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1J3A | | CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN L13 FROM PYROCOCCUS HORIKOSHII | | Descriptor: | 50S ribosomal protein L13P | | Authors: | Nakashima, T., Tanaka, M., Kazama, T., Kawamura, S., Kimura, M., Yao, M., Tanaka, I. | | Deposit date: | 2003-01-21 | | Release date: | 2003-02-04 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (1.6 Å) | | Cite: | Crystal structure of ribosomal protein L13 from hyperthermophilic archaeon Pyrococcus horikoshii
To be Published
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1WU7 | | CRYSTAL STRUCTURE OF HISTIDYL-TRNA SYNTHETASE FROM THERMOPLASMA ACIDOPHILUM | | Descriptor: | Histidyl-tRNA synthetase | | Authors: | Tanaka, Y., Sakai, N., Yao, M., Watanabe, N., Tamura, T., Tanaka, I. | | Deposit date: | 2004-12-01 | | Release date: | 2005-12-06 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2.4 Å) | | Cite: | Crystal structure of histidyl-tRNA synthetase from Thermoplasma acidophilum
To be Published
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1WV3 | |
2D6Y | | CRYSTAL STRUCTURE OF TRANSCRIPTIONAL FACTOR SCO4008 FROM STREPTOMYCES COELICOLOR A3(2) | | Descriptor: | putative tetR family regulatory protein, L(+)-TARTARIC ACID | | Authors: | Hayashi, T., Tanaka, Y., Sakai, N., Yao, M., Tamura, T., Tanaka, I. | | Deposit date: | 2005-11-15 | | Release date: | 2006-10-31 | | Last modified: | 2013-09-04 | | Method: | X-RAY DIFFRACTION (2.3 Å) | | Cite: | SCO4008, a Putative TetR Transcriptional Repressor from Streptomyces coelicolor A3(2), Regulates Transcription of sco4007 by Multidrug Recognition.
J.Mol.Biol., 425, 2013
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2DG0 | | CRYSTAL STRUCTURE OF DRP35, A 35KDA DRUG RESPONSIVE PROTEIN FROM STAPHYLOCOCCUS AUREUS | | Descriptor: | DrP35 | | Authors: | Tanaka, Y., Ohki, Y., Morikawa, K., Yao, M., Watanabe, N., Ohta, T., Tanaka, I. | | Deposit date: | 2006-03-07 | | Release date: | 2006-12-12 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2.4 Å) | | Cite: | Structural and Mutational Analyses of Drp35 from Staphylococcus aureus: A POSSIBLE MECHANISM FOR ITS LACTONASE ACTIVITY
J.Biol.Chem., 282, 2007
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2DG1 | | CRYSTAL STRUCTURE OF DRP35, A 35KDA DRUG RESPONSIVE PROTEIN FROM STAPHYLOCOCCUS AUREUS, COMPLEXED WITH CA2+ | | Descriptor: | DrP35, CALCIUM ION, GLYCEROL | | Authors: | Tanaka, Y., Ohki, Y., Morikawa, K., Yao, M., Watanabe, N., Ohta, T., Tanaka, I. | | Deposit date: | 2006-03-07 | | Release date: | 2006-12-12 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (1.72 Å) | | Cite: | Structural and Mutational Analyses of Drp35 from Staphylococcus aureus: A POSSIBLE MECHANISM FOR ITS LACTONASE ACTIVITY
J.Biol.Chem., 282, 2007
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2DG6 | | CRYSTAL STRUCTURE OF THE PUTATIVE TRANSCRIPTIONAL REGULATOR SCO5550 FROM STREPTOMYCES COELICOLOR A3(2) | | Descriptor: | putative transcriptional regulator | | Authors: | Hayashi, T., Tanaka, Y., Sakai, N., Yao, M., Tamura, T., Tanaka, I. | | Deposit date: | 2006-03-08 | | Release date: | 2007-03-13 | | Last modified: | 2018-03-28 | | Method: | X-RAY DIFFRACTION (2.2 Å) | | Cite: | Structural and genomic DNA analysis of a putative transcription factor SCO5550 from Streptomyces coelicolor A3(2): regulating the expression of gene sco5551 as a transcriptional activator with a novel dimer shape
Biochem. Biophys. Res. Commun., 435, 2013
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