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1QM8
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STRUCTURE OF BACTERIORHODOPSIN AT 100 K
Descriptor:BACTERIORHODOPSIN, RETINAL, 3-PHOSPHORYL-[1,2-DI-PHYTANYL]GLYCEROL, ...
Authors:Takeda, K., Matsui, Y., Sato, H., Hino, T., Kanamori, E., Okumura, H., Yamane, T., Kamiya, N., Kouyama, T.
Deposit date:1999-09-22
Release date:2000-08-16
Last modified:2019-03-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A Novel Three-Dimensional Crystal of Bacteriorhodopsin Obtained by Successive Fusion of the Vesicular Assemblies.
J.Mol.Biol., 283, 1998
1DZE
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STRUCTURE OF THE M INTERMEDIATE OF BACTERIORHODOPSIN TRAPPED AT 100K
Descriptor:BACTERIORHODOPSIN (M INTERMEDIATE), RETINAL, 3-PHOSPHORYL-[1,2-DI-PHYTANYL]GLYCEROL, ...
Authors:Takeda, K., Matsui, Y., Sato, H., Hino, T., Kanamori, E., Okumura, H., Yamane, T., Iizuka, T., Kamiya, N., Adachi, S., Kouyama, T.
Deposit date:2000-02-25
Release date:2000-08-16
Last modified:2019-03-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of the M Intermediate of Bacteriorhodopsin: Allosteric Structural Changes Mediated by Sliding Movement of a Transmembrane Helix
J.Mol.Biol., 341, 2004
3A38
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CRYSTAL STRUCTURE OF HIGH-POTENTIAL IRON-SULFUR PROTEIN FROM THERMOCHROMATIUM TEPIDUM AT 0.7 ANGSTROM RESOLUTION
Descriptor:High-potential iron-sulfur protein, IRON/SULFUR CLUSTER, SULFATE ION, ...
Authors:Takeda, K., Kusumoto, K., Hirano, Y., Miki, K.
Deposit date:2009-06-10
Release date:2010-01-26
Last modified:2014-03-05
Method:X-RAY DIFFRACTION (0.7 Å)
Cite:Detailed assessment of X-ray induced structural perturbation in a crystalline state protein.
J.Struct.Biol., 169, 2010
3A39
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CRYSTAL STRUCTURE OF HIGH-POTENTIAL IRON-SULFUR PROTEIN FROM THERMOCHROMATIUM TEPIDUM AT 0.72 ANGSTROM RESOLUTION
Descriptor:High-potential iron-sulfur protein, IRON/SULFUR CLUSTER, SULFATE ION, ...
Authors:Takeda, K., Kusumoto, K., Hirano, Y., Miki, K.
Deposit date:2009-06-11
Release date:2009-10-27
Last modified:2014-03-05
Method:X-RAY DIFFRACTION (0.72 Å)
Cite:Detailed assessment of X-ray induced structural perturbation in a crystalline state protein.
J.Struct.Biol., 169, 2010
1IWL
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CRYSTAL STRUCTURE OF THE LIPOPROTEIN LOCALIZATION FACTOR, LOLA
Descriptor:Outer-membrane lipoproteins carrier protein, ZINC ION, MAGNESIUM ION
Authors:Takeda, K., Miyatake, H., Yokota, N., Matsuyama, S., Tokuda, H., Miki, K.
Deposit date:2002-05-17
Release date:2003-07-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structures of bacterial lipoprotein localization factors, LolA and LolB
Embo J., 22, 2003
1IWM
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CRYSTAL STRUCTURE OF THE OUTER MEMBRANE LIPOPROTEIN RECEPTOR, LOLB
Descriptor:Outer Membrane Lipoprotein LolB, SULFATE ION
Authors:Takeda, K., Miyatake, H., Yokota, N., Matsuyama, S., Tokuda, H., Miki, K.
Deposit date:2002-05-17
Release date:2003-07-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of bacterial lipoprotein localization factors, LolA and LolB.
Embo J., 22, 2003
1IWN
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CRYSTAL STRUCTURE OF THE OUTER MEMBRANE LIPOPROTEIN RECEPTOR LOLB COMPLEXED WITH PEGMME2000
Descriptor:Outer Membrane Lipoprotein LolB, SULFATE ION, 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE
Authors:Takeda, K., Miyatake, H., Yokota, N., Matsuyama, S., Tokuda, H., Miki, K.
Deposit date:2002-05-17
Release date:2003-07-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures of bacterial lipoprotein localization factors, LolA and LolB.
Embo J., 22, 2003
1UA8
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CRYSTAL STRUCTURE OF THE LIPOPROTEIN LOCALIZATION FACTOR, LOLA
Descriptor:Outer-membrane lipoproteins carrier protein
Authors:Takeda, K., Miyatake, H., Yokota, N., Matsuyama, S., Tokuda, H., Miki, K.
Deposit date:2003-03-04
Release date:2003-07-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of bacterial lipoprotein localization factors, LolA and LolB.
Embo J., 22, 2003
1VAT
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IODINE DERIVATIVE OF HEN EGG-WHITE LYSOZYME
Descriptor:Lysozyme C, IODIDE ION
Authors:Takeda, K., Miyatake, H., Park, S.Y., Kawamoto, M., Kamiya, N., Miki, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-02-19
Release date:2005-03-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Multi-wavelength anomalous diffraction method for I and Xe atoms using ultra-high-energy X-rays from SPring-8
J.Appl.Crystallogr., 37, 2004
1VAU
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XENON DERIVATIVE OF HEN EGG-WHITE LYSOZYME
Descriptor:Lysozyme C, CHLORIDE ION, SODIUM ION, ...
Authors:Takeda, K., Miyatake, H., Park, S.Y., Kawamoto, M., Kamiya, N., Miki, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-02-19
Release date:2005-03-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Multi-wavelength anomalous diffraction method for I and Xe atoms using ultra-high-energy X-rays from SPring-8
J.Appl.Crystallogr., 37, 2004
3A9R
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X-RAY STRUCTURES OF BACILLUS PALLIDUS D-ARABINOSE ISOMERASECOMPLEX WITH (4R)-2-METHYLPENTANE-2,4-DIOL
Descriptor:D-arabinose isomerase, (4R)-2-METHYLPENTANE-2,4-DIOL, MANGANESE (II) ION
Authors:Takeda, K., Yoshida, H., Izumori, K., Kamitori, S.
Deposit date:2009-11-05
Release date:2010-04-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:X-ray structures of Bacillus pallidusd-arabinose isomerase and its complex with l-fucitol.
Biochim.Biophys.Acta, 1804, 2010
3A9S
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X-RAY STRUCTURE OF BACILLUS PALLIDUS D-ARABINOSE ISOMERASE COMPLEX WITH GLYCEROL
Descriptor:D-arabinose isomerase, GLYCEROL, MANGANESE (II) ION
Authors:Takeda, K., Yoshida, H., Izumori, K., Kamitori, S.
Deposit date:2009-11-05
Release date:2010-04-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:X-ray structures of Bacillus pallidusd-arabinose isomerase and its complex with l-fucitol.
Biochim.Biophys.Acta, 1804, 2010
3A9T
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X-RAY STRUCTURE OF BACILLUS PALLIDUS D-ARABINOSE ISOMERASE COMPLEX WITH L-FUCITOL
Descriptor:D-arabinose isomerase, FUCITOL, MANGANESE (II) ION
Authors:Takeda, K., Yoshida, H., Izumori, k., Kamitori, S.
Deposit date:2009-11-05
Release date:2010-04-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:X-ray structures of Bacillus pallidusd-arabinose isomerase and its complex with l-fucitol.
Biochim.Biophys.Acta, 1804, 2010
3AAB
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SMALL HEAT SHOCK PROTEIN HSP14.0 WITH THE MUTATIONS OF I120F AND I122F IN THE FORM I CRYSTAL
Descriptor:Putative uncharacterized protein ST1653, GLYCEROL, ISOPROPYL ALCOHOL
Authors:Takeda, K., Hayashi, T., Abe, T., Hirano, Y., Hanazono, Y., Yohda, M., Miki, K.
Deposit date:2009-11-13
Release date:2010-11-17
Last modified:2011-12-07
Method:X-RAY DIFFRACTION (1.851 Å)
Cite:Dimer structure and conformational variability in the N-terminal region of an archaeal small heat shock protein, StHsp14.0
J.Struct.Biol., 174, 2011
3AAC
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SMALL HEAT SHOCK PROTEIN HSP14.0 WITH THE MUTATIONS OF I120F AND I122F IN THE FORM II CRYSTAL
Descriptor:Putative uncharacterized protein ST1653
Authors:Takeda, K., Hayashi, T., Abe, T., Hirano, Y., Hanazono, Y., Yohda, M., Miki, K.
Deposit date:2009-11-13
Release date:2010-11-17
Last modified:2011-12-07
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Dimer structure and conformational variability in the N-terminal region of an archaeal small heat shock protein, StHsp14.0
J.Struct.Biol., 174, 2011
1IW9
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CRYSTAL STRUCTURE OF THE M INTERMEDIATE OF BACTERIORHODOPSIN
Descriptor:bacteriorhodopsin, ALPHA-D-GLUCOSE, ALPHA-D-MANNOSE, ...
Authors:Takeda, K., Matsui, Y., Kamiya, N., Adachi, S., Okumura, H., Kouyama, T., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-04-25
Release date:2003-12-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of the M intermediate of bacteriorhodopsin: allosteric structural changes mediated by sliding movement of a transmembrane helix
J.Mol.Biol., 341, 2004
3W5H
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ULTRA-HIGH RESOLUTION STRUCTURE OF NADH-CYTOCHROME B5 REDUCTASE
Descriptor:NADH-cytochrome b5 reductase 3, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL
Authors:Takeda, K., Ohno, H., Kosugi, M., Takaba, K., Miki, K.
Deposit date:2013-01-30
Release date:2013-07-17
Last modified:2014-04-30
Method:X-RAY DIFFRACTION (0.78 Å)
Cite:Elucidations of the catalytic cycle of NADH-cytochrome b5 reductase by X-ray crystallography: new insights into regulation of efficient electron transfer
J.Mol.Biol., 425, 2013
2ZPC
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CRYSTAL STRUCTURE OF THE R43L MUTANT OF LOLA IN THE CLOSED FORM
Descriptor:Outer-membrane lipoprotein carrier protein
Authors:Takeda, K., Yokota, N., Oguchi, Y., Tokuda, H., Miki, K.
Deposit date:2008-07-10
Release date:2008-08-05
Last modified:2017-02-22
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Opening and closing of the hydrophobic cavity of LolA coupled to lipoprotein binding and release.
J.Biol.Chem., 283, 2008
2ZPD
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CRYSTAL STRUCTURE OF THE R43L MUTANT OF LOLA IN THE OPEN FORM
Descriptor:Outer-membrane lipoprotein carrier protein
Authors:Takeda, K., Yokota, N., Oguchi, Y., Tokuda, H., Miki, K.
Deposit date:2008-07-10
Release date:2008-08-05
Last modified:2017-02-22
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Opening and closing of the hydrophobic cavity of LolA coupled to lipoprotein binding and release.
J.Biol.Chem., 283, 2008
3WJT
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CRYSTAL STRUCTURE OF THE L68D VARIANT OF MLOLB
Descriptor:Outer-membrane lipoprotein LolB, SULFATE ION, CHLORIDE ION
Authors:Takeda, K., Tokuda, H., Miki, K.
Deposit date:2013-10-16
Release date:2014-03-05
Last modified:2014-04-30
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Roles of the Protruding Loop of Factor B Essential for the Localization of Lipoproteins (LolB) in the Anchoring of Bacterial Triacylated Proteins to the Outer Membran
J.Biol.Chem., 289, 2014
3WJU
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CRYSTAL STRUCTURE OF THE L68D VARIANT OF MLOLB FROM ESCHERICHIA COLI
Descriptor:Outer-membrane lipoprotein LolB, SULFATE ION
Authors:Takeda, K., Tokuda, H., Miki, K.
Deposit date:2013-10-16
Release date:2014-03-05
Last modified:2014-04-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Roles of the Protruding Loop of Factor B Essential for the Localization of Lipoproteins (LolB) in the Anchoring of Bacterial Triacylated Proteins to the Outer Membran
J.Biol.Chem., 289, 2014
3WJV
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CRYSTAL STRUCTURE OF THE L68E VARIANT OF MLOLB
Descriptor:Outer-membrane lipoprotein LolB, SULFATE ION
Authors:Takeda, K., Tokuda, H., Miki, K.
Deposit date:2013-10-16
Release date:2014-03-05
Last modified:2014-04-30
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Roles of the Protruding Loop of Factor B Essential for the Localization of Lipoproteins (LolB) in the Anchoring of Bacterial Triacylated Proteins to the Outer Membran
J.Biol.Chem., 289, 2014
1BM1
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CRYSTAL STRUCTURE OF BACTERIORHODOPSIN IN THE LIGHT-ADAPTED STATE
Descriptor:BACTERIORHODOPSIN, RETINAL, PHOSPHORIC ACID 2,3-BIS-(3,7,11,15-TETRAMETHYL-HEXADECYLOXY)-PROPYL ESTER 2-HYDROXO-3-PHOSPHONOOXY-PROPYL ESTER
Authors:Sato, H., Takeda, K., Tani, K., Hino, T., Okada, T., Nakasako, M., Kamiya, N., Kouyama, T.
Deposit date:1998-07-28
Release date:1999-04-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Specific lipid-protein interactions in a novel honeycomb lattice structure of bacteriorhodopsin.
Acta Crystallogr.,Sect.D, 55, 1999
6JGH
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CRYSTAL STRUCTURE OF THE F99S/M153T/V163A/T203I VARIANT OF GFP AT 0.94 A
Descriptor:Green fluorescent protein, CHLORIDE ION
Authors:Eki, H., Tai, Y., Takaba, K., Hanazono, Y., Miki, K., Takeda, K.
Deposit date:2019-02-14
Release date:2019-04-17
Last modified:2019-05-01
Method:X-RAY DIFFRACTION (0.94 Å)
Cite:Subatomic resolution X-ray structures of green fluorescent protein
Iucrj, 6, 2019
6JGI
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CRYSTAL STRUCTURE OF THE S65T/F99S/M153T/V163A VARIANT OF GFP AT 0.85 A
Descriptor:Green fluorescent protein
Authors:Tai, Y., Takaba, K., Hanazono, Y., Miki, K., Takeda, K.
Deposit date:2019-02-14
Release date:2019-04-17
Last modified:2019-05-01
Method:X-RAY DIFFRACTION (0.85 Å)
Cite:Subatomic resolution X-ray structures of green fluorescent protein
Iucrj, 6, 2019