Author results

1POT
  • Download 1pot
  • View 1pot
Molmil generated image of 1pot
SPERMIDINE/PUTRESCINE-BINDING PROTEIN COMPLEXED WITH SPERMIDINE (MONOMER FORM)
Descriptor:SPERMIDINE/PUTRESCINE-BINDING PROTEIN, SPERMIDINE
Authors:Sugiyama, S., Maenaka, K., Matsushima, M., Morikawa, K.
Deposit date:1996-02-02
Release date:1996-12-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The 1.8-A X-ray structure of the Escherichia coli PotD protein complexed with spermidine and the mechanism of polyamine binding.
Protein Sci., 5, 1996
1POY
  • Download 1poy
  • View 1poy
Molmil generated image of 1poy
SPERMIDINE/PUTRESCINE-BINDING PROTEIN COMPLEXED WITH SPERMIDINE (DIMER FORM)
Descriptor:SPERMIDINE/PUTRESCINE-BINDING PROTEIN, SPERMIDINE
Authors:Sugiyama, S., Vassylyev, D.G., Matsushima, M., Morikawa, K.
Deposit date:1996-02-02
Release date:1996-07-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of PotD, the primary receptor of the polyamine transport system in Escherichia coli.
J.Biol.Chem., 271, 1996
3WR7
  • Download 3wr7
  • View 3wr7
Molmil generated image of 3wr7
CRYSTAL STRUCTURE OF SPERMIDINE ACETYLTRANSFERASE FROM ESCHERICHIA COLI
Descriptor:Spermidine N1-acetyltransferase, SPERMIDINE, COENZYME A
Authors:Sugiyama, S., Ishikawa, S., Tomitori, S., Niiyama, M., Hirose, M., Miyazaki, Y., Higashi, K., Adachi, H., Takano, K., Murakami, S., Inoue, T., Mori, Y., Kashiwagi, K., Igarashi, K., Matsumura, H.
Deposit date:2014-02-20
Release date:2015-09-02
Last modified:2016-06-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Molecular mechanism underlying promiscuous polyamine recognition by spermidine acetyltransferase
Int.J.Biochem.Cell Biol., 76, 2016
5AVD
  • Download 5avd
  • View 5avd
Molmil generated image of 5avd
THE 0.86 ANGSTROM STRUCTURE OF ELASTASE CRYSTALLIZED IN HIGH-STRENGTH AGAROSE HYDROGEL
Descriptor:Chymotrypsin-like elastase family member 1, SULFATE ION
Authors:Sugiyama, S., Shimizu, N., Maruyama, M., Sazaki, G., Adachi, H., Takano, K., Murakami, S., Inoue, T., Mori, Y., Matsumura, H.
Deposit date:2015-06-15
Release date:2015-07-08
Method:X-RAY DIFFRACTION (0.86 Å)
Cite:Growth of protein crystals in hydrogels prevents osmotic shock
J.Am.Chem.Soc., 134, 2012
5AVG
  • Download 5avg
  • View 5avg
Molmil generated image of 5avg
THE 0.95 ANGSTROM STRUCTURE OF THAUMATIN CRYSTALLIZED IN HIGH-STRENGTH AGAROSE HYDROGEL
Descriptor:Thaumatin-1
Authors:Sugiyama, S., Shimizu, N., Maruyama, M., Sazaki, G., Hirose, M., Adachi, H., Takano, K., Murakami, S., Inoue, T., Mori, Y., Matsumura, H.
Deposit date:2015-06-16
Release date:2015-07-08
Method:X-RAY DIFFRACTION (0.95 Å)
Cite:Growth of protein crystals in hydrogels prevents osmotic shock
J.Am.Chem.Soc., 134, 2012
5AVH
  • Download 5avh
  • View 5avh
Molmil generated image of 5avh
THE 0.90 ANGSTROM STRUCTURE (I222) OF GLUCOSE ISOMERASE CRYSTALLIZED IN HIGH-STRENGTH AGAROSE HYDROGEL
Descriptor:Xylose isomerase
Authors:Sugiyama, S., Shimizu, N., Maruyama, N., Sazaki, G., Adachi, H., Takano, K., Murakami, S., Inoue, T., Mori, Y., Matsumura, H.
Deposit date:2015-06-16
Release date:2015-07-08
Method:X-RAY DIFFRACTION (0.9 Å)
Cite:Growth of protein crystals in hydrogels prevents osmotic shock
J.Am.Chem.Soc., 134, 2012
5AVN
  • Download 5avn
  • View 5avn
Molmil generated image of 5avn
THE 1.03 ANGSTROM STRUCTURE (P212121) OF GLUCOSE ISOMERASE CRYSTALLIZED IN HIGH-STRENGTH AGAROSE HYDROGEL
Descriptor:Xylose isomerase, MANGANESE (II) ION, CALCIUM ION, ...
Authors:Sugiyama, S., Shimizu, N., Maruyama, N., Sazaki, G., Adachi, H., Takano, K., Murakami, S., Inoue, T., Mori, Y., Matsumura, H.
Deposit date:2015-06-23
Release date:2015-07-08
Method:X-RAY DIFFRACTION (1.03 Å)
Cite:Growth of protein crystals in hydrogels prevents osmotic shock
J.Am.Chem.Soc., 134, 2012
3WVM
  • Download 3wvm
  • View 3wvm
Molmil generated image of 3wvm
THE 0.88 ANGSTROM X-RAY STRUCTURE OF THE HUMAN HEART FATTY ACID-BINDING PROTEIN COMPLEXED WITH STEARIC ACID
Descriptor:Fatty acid-binding protein, heart, STEARIC ACID, ...
Authors:Sugiyama, S., Matsuoka, S., Mizohata, E., Matsuoka, D., Ishida, H., Hirose, M., Kakinouchi, K., Hara, T., Matsumura, H., Murakami, S., Inoue, T., Murata, M.
Deposit date:2014-05-25
Release date:2015-01-28
Method:X-RAY DIFFRACTION (0.88 Å)
Cite:Water-Mediated Recognition of Simple Alkyl Chains by Heart-Type Fatty-Acid-Binding Protein
Angew.Chem.Int.Ed.Engl., 2014
4TJZ
  • Download 4tjz
  • View 4tjz
Molmil generated image of 4tjz
THE 0.87 ANGSTROM X-RAY STRUCTURE OF THE HUMAN HEART FATTY ACID-BINDING PROTEIN COMPLEXED WITH CAPRIC ACID
Descriptor:Fatty acid-binding protein, heart, DECANOIC ACID, ...
Authors:Sugiyama, S., Matsuoka, S., Mizohata, E., Ishida, H., Hirose, M., Kakinouchi, K., Hara, T., Murakami, S., Inoue, T., Murata, M.
Deposit date:2014-05-25
Release date:2015-01-28
Last modified:2015-02-04
Method:X-RAY DIFFRACTION (0.87 Å)
Cite:Water-mediated recognition of simple alkyl chains by heart-type Fatty-Acid-binding protein
Angew.Chem.Int.Ed.Engl., 54, 2015
4TKB
  • Download 4tkb
  • View 4tkb
Molmil generated image of 4tkb
THE 0.86 ANGSTROM X-RAY STRUCTURE OF THE HUMAN HEART FATTY ACID-BINDING PROTEIN COMPLEXED WITH LAURIC ACID
Descriptor:Fatty acid-binding protein, heart, LAURIC ACID, ...
Authors:Sugiyama, S., Matsuoka, S., Mizohata, E., Matsuoka, D., Ishida, H., Hirose, M., Kakinouchi, K., Hara, T., Murakami, S., Inoue, T., Murata, M.
Deposit date:2014-05-26
Release date:2015-01-28
Last modified:2015-02-04
Method:X-RAY DIFFRACTION (0.86 Å)
Cite:Water-mediated recognition of simple alkyl chains by heart-type Fatty-Acid-binding protein
Angew.Chem.Int.Ed.Engl., 54, 2015
4TKH
  • Download 4tkh
  • View 4tkh
Molmil generated image of 4tkh
THE 0.93 ANGSTROM X-RAY STRUCTURE OF THE HUMAN HEART FATTY ACID-BINDING PROTEIN COMPLEXED WITH MYRISTIC ACID
Descriptor:Fatty acid-binding protein, heart, MYRISTIC ACID, ...
Authors:Sugiyama, S., Matsuoka, S., Mizohata, E., Matsuoka, D., Ishida, H., Hirose, M., Kakinouchi, K., Hara, T., Murakami, S., Inoue, T., Murata, M.
Deposit date:2014-05-26
Release date:2015-01-28
Last modified:2015-02-04
Method:X-RAY DIFFRACTION (0.93 Å)
Cite:Water-mediated recognition of simple alkyl chains by heart-type Fatty-Acid-binding protein
Angew.Chem.Int.Ed.Engl., 54, 2015
4TKJ
  • Download 4tkj
  • View 4tkj
Molmil generated image of 4tkj
THE 0.87 ANGSTROM X-RAY STRUCTURE OF THE HUMAN HEART FATTY ACID-BINDING PROTEIN COMPLEXED WITH PALMITIC ACID
Descriptor:Fatty acid-binding protein, heart, PALMITIC ACID, ...
Authors:Sugiyama, S., Matsuoka, S., Mizohata, E., Matsuoka, D., Ishida, H., Hirose, M., Kakinouchi, K., Hara, T., Murakami, S., Inoue, T., Murata, M.
Deposit date:2014-05-26
Release date:2015-01-28
Last modified:2015-02-04
Method:X-RAY DIFFRACTION (0.87 Å)
Cite:Water-mediated recognition of simple alkyl chains by heart-type Fatty-Acid-binding protein
Angew.Chem.Int.Ed.Engl., 54, 2015
4WBK
  • Download 4wbk
  • View 4wbk
Molmil generated image of 4wbk
THE 1.37 ANGSTROM X-RAY STRUCTURE OF THE HUMAN HEART FATTY ACID-BINDING PROTEIN COMPLEXED WITH STEARIC ACID
Descriptor:Fatty acid-binding protein, heart, STEARIC ACID
Authors:Sugiyama, S., Matsuoka, S., Mizohata, E., Matsuoka, D., Murakami, S., Inoue, T., Murata, M.
Deposit date:2014-09-03
Release date:2015-01-28
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:Molecular Dynamics Simulations of Heart-type Fatty Acid Binding Protein in Apo and Holo Forms, and Hydration Structure Analyses in the Binding Cavity
J.Phys.Chem.B, 119, 2015
4Y59
  • Download 4y59
  • View 4y59
Molmil generated image of 4y59
CRYSTAL STRUCTURE OF ALIS1-STREPTAVIDIN COMPLEX
Descriptor:Streptavidin, 2-[3-(trifluoromethyl)phenyl]furo[3,2-c]pyridin-4(5H)-one
Authors:Sugiyama, S., Terai, T., Kohno, M., Ishida, H., Nagano, T.
Deposit date:2015-02-11
Release date:2015-09-23
Last modified:2015-12-16
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:Artificial Ligands of Streptavidin (ALiS): Discovery, Characterization, and Application for Reversible Control of Intracellular Protein Transport
J.Am.Chem.Soc., 137, 2015
4Y5D
  • Download 4y5d
  • View 4y5d
Molmil generated image of 4y5d
CRYSTAL STRUCTURE OF ALIS2-STREPTAVIDIN COMPLEX
Descriptor:Streptavidin, methyl 3-(4-oxo-4,5-dihydrofuro[3,2-c]pyridin-2-yl)benzoate, 3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL, ...
Authors:Sugiyama, S., Terai, T., Kohno, M., Ishida, H., Nagano, T.
Deposit date:2015-02-11
Release date:2015-09-23
Last modified:2015-12-16
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Artificial Ligands of Streptavidin (ALiS): Discovery, Characterization, and Application for Reversible Control of Intracellular Protein Transport
J.Am.Chem.Soc., 137, 2015
5B5F
  • Download 5b5f
  • View 5b5f
Molmil generated image of 5b5f
CRYSTAL STRUCTURE OF ALIS3-STREPTAVIDIN COMPLEX
Descriptor:Streptavidin, N-methyl-3-(4-oxo-4,5-dihydrofuro[3,2-c]pyridin-2-yl)benzenesulfonamide
Authors:Sugiyama, S., Terai, T., Kakinouchi, K., Fujikake, R., Nagano, T., Urano, Y.
Deposit date:2016-05-04
Release date:2017-03-01
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Improving the Solubility of Artificial Ligands of Streptavidin to Enable More Practical Reversible Switching of Protein Localization in Cells
Chembiochem, 18, 2017
5B5G
  • Download 5b5g
  • View 5b5g
Molmil generated image of 5b5g
CRYSTAL STRUCTURE OF ALIS4-STREPTAVIDIN COMPLEX
Descriptor:Streptavidin, SULFITE ION, methyl 5-(4-oxidanylidene-5~{H}-furo[3,2-c]pyridin-2-yl)pyridine-3-carboxylate
Authors:Sugiyama, S., Terai, T., Kakinouchi, K., Fujikake, R., Nagano, T., Urano, Y.
Deposit date:2016-05-04
Release date:2017-03-01
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Improving the Solubility of Artificial Ligands of Streptavidin to Enable More Practical Reversible Switching of Protein Localization in Cells
Chembiochem, 18, 2017
3AGV
  • Download 3agv
  • View 3agv
Molmil generated image of 3agv
CRYSTAL STRUCTURE OF A HUMAN IGG-APTAMER COMPLEX
Descriptor:Ig gamma-1 chain C region, 5'-R(*GP*GP*AP*GP*GP*(UFT)P*GP*(CFZ)P*(UFT)P*(CFZ)P*(CFZ)P*GP*AP*AP*A*GP*GP*AP*AP*(CFZ)P*(UFT)P*(CFZ)P*(CFZ)P*A)-3', ALPHA-D-MANNOSE, ...
Authors:Nomura, Y., Sugiyama, S., Sakamoto, T., Miyakawa, S., Adachi, H., Takano, K., Murakami, S., Inoue, T., Mori, Y., Nakamura, Y., Matsumura, H.
Deposit date:2010-04-08
Release date:2010-11-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Conformational plasticity of RNA for target recognition as revealed by the 2.15 A crystal structure of a human IgG-aptamer complex
Nucleic Acids Res., 38, 2010
3WBG
  • Download 3wbg
  • View 3wbg
Molmil generated image of 3wbg
STRUCTURE OF THE HUMAN HEART FATTY ACID-BINDING PROTEIN IN COMPLEX WITH 1-ANILINONAPHTALENE-8-SULPHONIC ACID
Descriptor:Fatty acid-binding protein, heart, 8-ANILINO-1-NAPHTHALENE SULFONATE
Authors:Hirose, M., Sugiyama, S., Ishida, H., Niiyama, M., Matsuoka, D., Hara, T., Sato, F., Mizohata, E., Murakami, S., Inoue, T., Matsuoka, S., Murata, M.
Deposit date:2013-05-16
Release date:2013-10-30
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structure of the human-heart fatty-acid-binding protein 3 in complex with the fluorescent probe 1-anilinonaphthalene-8-sulphonic acid
J.SYNCHROTRON RADIAT., 20, 2013
4Y9H
  • Download 4y9h
  • View 4y9h
Molmil generated image of 4y9h
THE 1.43 ANGSTROM CRYSTAL STRUCTURE OF BACTERIORHODOPSIN CRYSTALLIZED FROM BICELLES
Descriptor:Bacteriorhodopsin, RETINAL, PHOSPHATE ION, ...
Authors:Saiki, H., Sugiyama, S., Kakinouchi, K., Kawatake, S., Hanashima, S., Matsumori, N., Murata, M.
Deposit date:2015-02-17
Release date:2016-02-17
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:The 1.43 angstrom crystal structure of bacteriorhodopsin crystallized from bicelles
To Be Published
3WXQ
  • Download 3wxq
  • View 3wxq
Molmil generated image of 3wxq
SERIAL FEMTOSECOND X-RAY STRUCTURE OF HUMAN FATTY ACID-BINDING PROTEIN TYPE-3 (FABP3) IN COMPLEX WITH STEARIC ACID (C18:0) DETERMINED USING X-RAY FREE-ELECTRON LASER AT SACLA
Descriptor:Fatty acid-binding protein, heart, STEARIC ACID
Authors:Mizohata, E., Suzuki, M., Kakinouchi, K., Sugiyama, S., Murata, M., Sugahara, M., Nango, E., Tanaka, T., Tanaka, R., Tono, K., Song, C., Hatsui, T., Joti, Y., Yabashi, M., Iwata, S.
Deposit date:2014-08-04
Release date:2014-11-05
Last modified:2018-03-14
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Grease matrix as a versatile carrier of proteins for serial crystallography
Nat. Methods, 12, 2015
5B27
  • Download 5b27
  • View 5b27
Molmil generated image of 5b27
THE 1.02A STRUCTURE OF HUMAN FABP3 M20S MUTANT COMPLEXED WITH PALMITIC ACID
Descriptor:Fatty acid-binding protein, heart, PALMITIC ACID, ...
Authors:Matsuoka, D., Sugiyama, S., Kakinouchi, K., Niiyama, M., Murata, M., Matsuoka, S.
Deposit date:2016-01-12
Release date:2017-01-18
Method:X-RAY DIFFRACTION (1.02 Å)
Cite:The 1.02A structure of human FABP3 M20S mutant complexed with palmitic acid.
To Be Published
5B28
  • Download 5b28
  • View 5b28
Molmil generated image of 5b28
THE 0.90A STRUCTURE OF HUMAN FABP3 F16V MUTANT COMPLEXED WITH PALMITIC ACID
Descriptor:Fatty acid-binding protein, heart, PALMITIC ACID, ...
Authors:Matsuoka, D., Sugiyama, S., Kakinouchi, K., Niiyama, M., Murata, M., Matsuoka, S.
Deposit date:2016-01-12
Release date:2017-01-18
Method:X-RAY DIFFRACTION (0.9 Å)
Cite:The 0.90A structure of human FABP3 F16V mutant complexed with palmitic acid.
To Be Published
5B29
  • Download 5b29
  • View 5b29
Molmil generated image of 5b29
THE 1.28A STRUCTURE OF HUMAN FABP3 F16V MUTANT COMPLEXED WITH PALMITIC ACID AT ROOM TEMPERATURE
Descriptor:Fatty acid-binding protein, heart, PALMITIC ACID
Authors:Matsuoka, D., Sugiyama, S., Kakinouchi, K., Niiyama, M., Murata, M., Matsuoka, S.
Deposit date:2016-01-12
Release date:2017-01-18
Method:X-RAY DIFFRACTION (1.28 Å)
Cite:The 1.28A structure of human FABP3 F16V mutant complexed with palmitic acid at room temperature.
To Be Published
5X8O
  • Download 5x8o
  • View 5x8o
Molmil generated image of 5x8o
CRYSTAL STRUCTURE OF GMP REDUCTASE FROM TRYPANOSOMA BRUCEI WITH GUANOSINE 5'-TRIPHOSPHATE
Descriptor:Inosine-5'-monophosphate dehydrogenase, GUANOSINE-5'-TRIPHOSPHATE, PHOSPHATE ION
Authors:Otani, T., Imamura, A., Sugiyama, S., Nishimura, S., Inui, T.
Deposit date:2017-03-03
Release date:2018-03-07
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structure of GMP reductase from Trypanosoma brucei with guanosine 5'-triphosphate
To Be Published
<12>