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3W0D
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STRUCTURE OF ELASTASE INHIBITOR AFUEI (CYRSTAL FORM I)
Descriptor:Elastase inhibitor AFUEI
Authors:Imada, K., Sakuma, M., Okumura, Y., Ogawa, K., Nikai, T., Homma, M.
Deposit date:2012-10-29
Release date:2013-05-15
Last modified:2013-07-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:X-ray Structure Analysis and Characterization of AFUEI, an Elastase Inhibitor from Aspergillus fumigatus
J.Biol.Chem., 288, 2013
3W0E
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STRUCTURE OF ELASTASE INHIBITOR AFUEI (CRYSTAL FORM II)
Descriptor:Elastase inhibitor AFUEI
Authors:Imada, K., Sakuma, M., Okumura, Y., Ogawa, K., Nikai, T., Homma, M.
Deposit date:2012-10-29
Release date:2013-05-15
Last modified:2013-07-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:X-ray Structure Analysis and Characterization of AFUEI, an Elastase Inhibitor from Aspergillus fumigatus
J.Biol.Chem., 288, 2013
6IF6
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STRUCTURE OF THE PERIPLASMIC DOMAIN OF SFLA
Descriptor:Protein SflA, GLYCEROL, PHOSPHATE ION
Authors:Nishikawa, S., Sakuma, M., Kojima, S., Homma, M., Imada, K.
Deposit date:2018-09-18
Release date:2019-05-01
Last modified:2019-05-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of the periplasmic domain of SflA involved in spatial regulation of the flagellar biogenesis of Vibrio reveals a TPR/SLR -like fold.
J. Biochem., 2019
3W1E
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STRUCTURE OF FLGT, A FLAGELLAR BASAL BODY COMPONENT PROTEIN
Descriptor:Flagella basal-body protein
Authors:Terashima, H., Sakuma, M., Homma, M., Imada, K.
Deposit date:2012-11-14
Release date:2013-04-03
Last modified:2013-08-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Insight into the assembly mechanism in the supramolecular rings of the sodium-driven Vibrio flagellar motor from the structure of FlgT
Proc.Natl.Acad.Sci.USA, 110, 2013
3WPW
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STRUCTURE OF POMBC5, A PERIPLASMIC FRAGMENT OF POMB FROM VIBRIO
Descriptor:PomB, ACETATE ION
Authors:Takao, M., Sakuma, M., Zhu, S., Homma, M., Kojima, S., Imada, K.
Deposit date:2014-01-17
Release date:2014-09-10
Last modified:2017-09-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Conformational change in the periplasmic region of the flagellar stator coupled with the assembly around the rotor
Proc. Natl. Acad. Sci. U.S.A., 111, 2014
3WPX
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STRUCTURE OF POMBC4, A PERIPLASMIC FRAGMENT OF POMB FROM VIBRIO ALGINOLYTICUS
Descriptor:PomB
Authors:Takao, M., Sakuma, M., Zhu, S., Homma, M., Kojima, S., Imada, K.
Deposit date:2014-01-17
Release date:2014-09-10
Last modified:2017-09-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Conformational change in the periplasmic region of the flagellar stator coupled with the assembly around the rotor
Proc. Natl. Acad. Sci. U.S.A., 111, 2014
5Y3Z
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STRUCTURE OF THE PERIPLASMIC DOMAIN OF THE MOTB L119P MUTANT FROM SALMONELLA (CRYSTAL FORM 1)
Descriptor:Motility protein B, ARGININE, IMIDAZOLE, ...
Authors:Takao, M., Kojima, S., Sakuma, M., Homma, M., Imada, K.
Deposit date:2017-07-31
Release date:2018-04-11
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Helix Rearrangement in the Periplasmic Domain of the Flagellar Stator B Subunit Activates Peptidoglycan Binding and Ion Influx.
Structure, 26, 2018
5Y40
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STRUCTURE OF THE PERIPLASMIC DOMAIN OF THE MOTB L119P MUTANT FROM SALMONELLA (CRYSTAL FORM 2)
Descriptor:Motility protein B
Authors:Takao, M., Kojima, S., Sakuma, M., Homma, M., Imada, K.
Deposit date:2017-07-31
Release date:2018-04-11
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The Helix Rearrangement in the Periplasmic Domain of the Flagellar Stator B Subunit Activates Peptidoglycan Binding and Ion Influx.
Structure, 26, 2018
6AHP
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STRUCTURE OF THE 58-167 FRAGMENT OF FLIL
Descriptor:Flagellar protein FliL
Authors:Takekawa, N., Isumi, M., Sakuma, M., Kojima, S., Homma, M., Imada, K.
Deposit date:2018-08-20
Release date:2019-03-06
Last modified:2019-04-03
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure ofVibrioFliL, a New Stomatin-like Protein That Assists the Bacterial Flagellar Motor Function.
MBio, 10, 2019
6AHQ
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STRUCTURE OF THE 40-167 FRAGMENT OF FLIL
Descriptor:Flagellar protein FliL
Authors:Takekawa, N., Isumi, M., Sakuma, M., Kojima, S., Homma, M., Imada, K.
Deposit date:2018-08-20
Release date:2019-03-06
Last modified:2019-04-03
Method:X-RAY DIFFRACTION (3.398 Å)
Cite:Structure ofVibrioFliL, a New Stomatin-like Protein That Assists the Bacterial Flagellar Motor Function.
MBio, 10, 2019
2D4U
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CRYSTAL STRUCTURE OF THE LIGAND BINDING DOMAIN OF THE BACTERIAL SERINE CHEMORECEPTOR TSR
Descriptor:Methyl-accepting chemotaxis protein I
Authors:Imada, K., Tajima, H., Namba, K., Sakuma, M., Homma, M., Kawagishi, I.
Deposit date:2005-10-24
Release date:2006-11-14
Last modified:2011-10-19
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Ligand specificity determined by differentially arranged common ligand-binding residues in the bacterial amino acid chemoreceptors Tsr and Tar.
J.Biol.Chem., 2011
3ATP
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STRUCTURE OF THE LIGAND BINDING DOMAIN OF THE BACTERIAL SERINE CHEMORECEPTOR TSR WITH LIGAND
Descriptor:Methyl-accepting chemotaxis protein I, SERINE
Authors:Tajima, H., Sakuma, M., Homma, K., Kawagishi, I., Imada, K.
Deposit date:2011-01-07
Release date:2011-10-19
Last modified:2013-06-19
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Ligand specificity determined by differentially arranged common ligand-binding residues in bacterial amino acid chemoreceptors Tsr and Tar.
J.Biol.Chem., 286, 2011
2ZF8
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CRYSTAL STRUCTURE OF MOTY
Descriptor:Component of sodium-driven polar flagellar motor
Authors:Imada, K., Kojima, S., Namba, K., Homma, M.
Deposit date:2007-12-25
Release date:2008-07-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Insights into the stator assembly of the Vibrio flagellar motor from the crystal structure of MotY
Proc.Natl.Acad.Sci.Usa, 105, 2008
2ZOV
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STRUCTURE OF THE PERIPLASMIC DOMAIN OF MOTB FROM SALMONELLA (CRYSTAL FORM I)
Descriptor:Chemotaxis protein motB
Authors:Imada, K., Kojima, S., Namba, K., Homma, M.
Deposit date:2008-06-09
Release date:2009-06-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Stator assembly and activation mechanism of the flagellar motor by the periplasmic region of MotB
Mol.Microbiol., 73, 2009
2ZVY
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STRUCTURE OF THE PERIPLASMIC DOMAIN OF MOTB FROM SALMONELLA (CRYSTAL FORM II)
Descriptor:Chemotaxis protein motB
Authors:Kojima, S., Homma, M., Namba, K., Imada, K.
Deposit date:2008-11-26
Release date:2009-09-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Stator assembly and activation mechanism of the flagellar motor by the periplasmic region of MotB
Mol.Microbiol., 73, 2009
2ZVZ
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STRUCTURE OF THE PERIPLASMIC DOMAIN OF MOTB FROM SALMONELLA (CRYSTAL FORM III)
Descriptor:Chemotaxis protein motB
Authors:Imada, K., Kojima, S., Namba, K., Homma, S.
Deposit date:2008-11-26
Release date:2009-09-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Stator assembly and activation mechanism of the flagellar motor by the periplasmic region of MotB
Mol.Microbiol., 73, 2009
3P74
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H181N MUTANT OF PENTAERYTHRITOL TETRANITRATE REDUCTASE CONTAINING A C-TERMINAL HIS8-TAG
Descriptor:Pentaerythritol tetranitrate reductase, FLAVIN MONONUCLEOTIDE
Authors:Toogood, H.S., Scrutton, N.S.
Deposit date:2010-10-12
Release date:2011-03-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:A Site-Saturated Mutagenesis Study of Pentaerythritol Tetranitrate Reductase Reveals that Residues 181 and 184 Influence Ligand Binding, Stereochemistry and Reactivity.
Chembiochem, 12, 2011
3P7Y
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PENTAERYTHRITOL TETRANITRATE REDUCTASE CO-CRYSTAL STRUCTURE WITH BOUND (E)-1-(2'-HYDROXYPHENYL)-2-NITROETHENE
Descriptor:Pentaerythritol tetranitrate reductase, FLAVIN MONONUCLEOTIDE, 2-[(E)-2-nitroethenyl]phenol
Authors:Toogood, H.S., Scrutton, N.S.
Deposit date:2010-10-13
Release date:2011-03-02
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:A Site-Saturated Mutagenesis Study of Pentaerythritol Tetranitrate Reductase Reveals that Residues 181 and 184 Influence Ligand Binding, Stereochemistry and Reactivity.
Chembiochem, 12, 2011
3P80
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PENTAERYTHRITOL TETRANITRATE REDUCTASE CO-CRYSTAL STRUCTURE CONTAINING BOUND (E)-1-(3'-HYDROXYPHENYL)-2-NITROETHENE
Descriptor:Pentaerythritol tetranitrate reductase, FLAVIN MONONUCLEOTIDE, 3-[(E)-2-nitroethenyl]phenol
Authors:Toogood, H.S., Scrutton, N.S.
Deposit date:2010-10-13
Release date:2011-03-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:A Site-Saturated Mutagenesis Study of Pentaerythritol Tetranitrate Reductase Reveals that Residues 181 and 184 Influence Ligand Binding, Stereochemistry and Reactivity.
Chembiochem, 12, 2011
3P81
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PENTAERYTHRITOL TETRANITRATE REDUCTASE CO-CRYSTAL STRUCTURE CONTAINING A BOUND (E)-1-(4'-HYDROXYPHENYL)-2-NITROETHENE MOLECULE
Descriptor:Pentaerythritol tetranitrate reductase, FLAVIN MONONUCLEOTIDE, 4-[(E)-2-nitroethenyl]phenol
Authors:Toogood, H.S., Scrutton, N.S.
Deposit date:2010-10-13
Release date:2011-03-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:A Site-Saturated Mutagenesis Study of Pentaerythritol Tetranitrate Reductase Reveals that Residues 181 and 184 Influence Ligand Binding, Stereochemistry and Reactivity.
Chembiochem, 12, 2011
3P82
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H184N MUTANT OF PENTAERYTHRITOL TETRANITRATE REDUCTASE CONTAINING BOUND ACETATE ION
Descriptor:Pentaerythritol tetranitrate reductase, FLAVIN MONONUCLEOTIDE, ACETATE ION
Authors:Toogood, H.S., Scrutton, N.S.
Deposit date:2010-10-13
Release date:2011-03-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A Site-Saturated Mutagenesis Study of Pentaerythritol Tetranitrate Reductase Reveals that Residues 181 and 184 Influence Ligand Binding, Stereochemistry and Reactivity.
Chembiochem, 12, 2011
3P84
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Y351A MUTANT OF PENTAERYTHRITOL TETRANITRATE REDUCTASE CONTAINING A BOUND ACETATE MOLECULE
Descriptor:Pentaerythritol tetranitrate reductase, FLAVIN MONONUCLEOTIDE, ACETATE ION
Authors:Toogood, H.S., Scrutton, N.S.
Deposit date:2010-10-13
Release date:2011-04-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Active site modifications in pentaerythritol tetranitrate reductase can lead to improved product enantiopurity, decreased by-product formation and altered stereochemical outcome in reactions with a,b-unsaturated nitroolefins
Catalysis Science and Technology, 2011
3P8I
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Y351F MUTANT OF PENTAERYTHRITOL TETRANITRATE REDUCTASE CONTAINING A BOUND ACETATE MOLECULE
Descriptor:Pentaerythritol tetranitrate reductase, FLAVIN MONONUCLEOTIDE, ACETATE ION
Authors:Toogood, H.S., Scrutton, N.S.
Deposit date:2010-10-14
Release date:2011-04-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.19 Å)
Cite:Active site modifications in pentaerythritol tetranitrate reductase can lead to improved product enantiopurity, decreased by-product formation and altered stereochemical outcome in reactions with a,b-unsaturated nitroolefins
Catalysis Science and Technology, 2011
3P8J
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Y351S MUTANT OF PENTAERYTHRITOL TETRANITRATE REDUCTASE CONTAINING A BOUND ACETATE MOLECULE
Descriptor:Pentaerythritol tetranitrate reductase, FLAVIN MONONUCLEOTIDE, ACETATE ION
Authors:Toogood, H.S., Scrutton, N.S.
Deposit date:2010-10-14
Release date:2011-04-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1 Å)
Cite:Active site modifications in pentaerythritol tetranitrate reductase can lead to improved product enantiopurity, decreased by-product formation and altered stereochemical outcome in reactions with a,b-unsaturated nitroolefins
Catalysis Science and Technology, 2011