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7DAA
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BU of 7daa by Molmil
Crystal structure of basigin complexed with anti-basigin Fab fragment
Descriptor: CADMIUM ION, Heavy chain of antibody Fab fragment, Isoform 2 of Basigin, ...
Authors:Sakuragi, T, Kanai, R, Narita, H, Onishi, E, Miyazaki, T, Baba, T, Nakagawa, A, Toyoshima, C, Nagata, S.
Deposit date:2020-10-16
Release date:2021-10-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:The tertiary structure of the human Xkr8-Basigin complex that scrambles phospholipids at plasma membranes.
Nat.Struct.Mol.Biol., 28, 2021
7D9Z
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BU of 7d9z by Molmil
Crystal structure of anti-basigin Fab fragment
Descriptor: 1,2-ETHANEDIOL, CITRATE ANION, Heavy chain of antibody Fab fragment, ...
Authors:Sakuragi, T, Kanai, R, Narita, H, Onishi, E, Miyazaki, T, Baba, T, Nakagawa, A, Toyoshima, C, Nagata, S.
Deposit date:2020-10-14
Release date:2021-10-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.123 Å)
Cite:The tertiary structure of the human Xkr8-Basigin complex that scrambles phospholipids at plasma membranes.
Nat.Struct.Mol.Biol., 28, 2021
7DCE
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BU of 7dce by Molmil
Cryo-EM structure of human XKR8-basigin complex bound to Fab fragment
Descriptor: 1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Heavy chain of Fab fragment, Isoform 2 of Basigin, ...
Authors:Sakuragi, T, Kanai, R, Tsutsumi, A, Narita, H, Onishi, E, Miyazaki, T, Baba, T, Nakagawa, A, Kikkawa, M, Toyoshima, C, Nagata, S.
Deposit date:2020-10-26
Release date:2021-10-20
Last modified:2024-01-24
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:The tertiary structure of the human Xkr8-Basigin complex that scrambles phospholipids at plasma membranes.
Nat.Struct.Mol.Biol., 28, 2021
1IUP
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BU of 1iup by Molmil
meta-Cleavage product hydrolase from Pseudomonas fluorescens IP01 (CumD) S103A mutant complexed with isobutyrates
Descriptor: 2-METHYL-PROPIONIC ACID, meta-Cleavage product hydrolase
Authors:Fushinobu, S, Saku, T, Hidaka, M, Jun, S.-Y, Nojiri, H, Yamane, H, Shoun, H, Omori, T, Wakagi, T.
Deposit date:2002-03-06
Release date:2002-09-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structures of a meta-cleavage product hydrolase from Pseudomonas fluorescens IP01 (CumD) complexed with cleavage products
PROTEIN SCI., 11, 2002
1IUO
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BU of 1iuo by Molmil
meta-Cleavage product hydrolase from Pseudomonas fluorescens IP01 (CumD) S103A mutant complexed with acetates
Descriptor: ACETATE ION, meta-Cleavage product hydrolase
Authors:Fushinobu, S, Saku, T, Hidaka, M, Jun, S.-Y, Nojiri, H, Yamane, H, Shoun, H, Omori, T, Wakagi, T.
Deposit date:2002-03-06
Release date:2002-09-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of a meta-cleavage product hydrolase from Pseudomonas fluorescens IP01 (CumD) complexed with cleavage products
PROTEIN SCI., 11, 2002
1IUN
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BU of 1iun by Molmil
meta-Cleavage product hydrolase from Pseudomonas fluorescens IP01 (CumD) S103A mutant hexagonal
Descriptor: ACETATE ION, meta-Cleavage product hydrolase
Authors:Fushinobu, S, Saku, T, Hidaka, M, Jun, S.-Y, Nojiri, H, Yamane, H, Shoun, H, Omori, T, Wakagi, T.
Deposit date:2002-03-06
Release date:2002-09-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structures of a meta-cleavage product hydrolase from Pseudomonas fluorescens IP01 (CumD) complexed with cleavage products
PROTEIN SCI., 11, 2002
1QXD
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BU of 1qxd by Molmil
Structural Basis for the Potent Antisickling Effect of a Novel Class of 5-Membered Heterocyclic Aldehydic Compounds
Descriptor: FURFURAL, Hemoglobin alpha chain, Hemoglobin beta chain, ...
Authors:Safo, M.K, Abdulmalik, O, Danso-Danquah, R, Nokuri, S, Joshi, G.S, Musayev, F.N, Asakura, T, Abraham, D.J.
Deposit date:2003-09-05
Release date:2003-09-16
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural basis for the potent antisickling effect of a novel class of five-membered heterocyclic aldehydic compounds
J.Med.Chem., 47, 2004
1QXE
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BU of 1qxe by Molmil
Structural Basis for the Potent Antisickling Effect of a Novel Class of 5-Membered Heterocyclic Aldehydic Compounds
Descriptor: 5-HYDROXYMETHYL-FURFURAL, Hemoglobin alpha chain, Hemoglobin beta chain, ...
Authors:Safo, M.K, Abdulmalik, O, Danso-Danquah, R, Nokuri, S, Joshi, G.S, Musayev, F.N, Asakura, T, Abraham, D.J.
Deposit date:2003-09-05
Release date:2003-09-16
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural basis for the potent antisickling effect of a novel class of five-membered heterocyclic aldehydic compounds
J.Med.Chem., 47, 2004
3LZX
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BU of 3lzx by Molmil
Crystal structure of ferredoxin-NADP+ oxidoreductase from Bacillus subtilis (FORM II)
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Ferredoxin--NADP reductase 2, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Komori, H, Seo, D, Sakurai, T, Higuchi, Y.
Deposit date:2010-03-02
Release date:2010-12-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure analysis of Bacillus subtilis ferredoxin-NADP(+) oxidoreductase and the structural basis for its substrate selectivity
Protein Sci., 19, 2010
3LZW
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BU of 3lzw by Molmil
Crystal structure of ferredoxin-NADP+ oxidoreductase from bacillus subtilis (form I)
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Ferredoxin--NADP reductase 2, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Komori, H, Seo, D, Sakurai, T, Higuchi, Y.
Deposit date:2010-03-02
Release date:2010-12-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure analysis of Bacillus subtilis ferredoxin-NADP(+) oxidoreductase and the structural basis for its substrate selectivity
Protein Sci., 19, 2010
1CCR
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BU of 1ccr by Molmil
STRUCTURE OF RICE FERRICYTOCHROME C AT 2.0 ANGSTROMS RESOLUTION
Descriptor: CYTOCHROME C, HEME C
Authors:Ochi, H, Hata, Y, Tanaka, N, Kakudo, M, Sakurai, T, Aihara, S, Morita, Y.
Deposit date:1983-03-14
Release date:1983-04-21
Last modified:2021-03-03
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure of rice ferricytochrome c at 2.0 A resolution.
J.Mol.Biol., 166, 1983
1D7N
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BU of 1d7n by Molmil
SOLUTION STRUCTURE ANALYSIS OF THE MASTOPARAN WITH DETERGENTS
Descriptor: PROTEIN (WASP VENOM PEPTIDE (MASTOPARAN))
Authors:Hori, Y, Demura, M, Iwadate, M, Niidome, T, Aoyagi, H, Asakura, T.
Deposit date:1999-10-19
Release date:2001-06-20
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Interaction of mastoparan with membranes studied by 1H-NMR spectroscopy in detergent micelles and by solid-state 2H-NMR and 15N-NMR spectroscopy in oriented lipid bilayers.
Eur.J.Biochem., 268, 2001
4HAK
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BU of 4hak by Molmil
Multicopper Oxidase CueO mutant E506A
Descriptor: ACETATE ION, Blue copper oxidase CueO, COPPER (II) ION, ...
Authors:Komori, H, Kataoka, K, Sakurai, T, Higuchi, Y.
Deposit date:2012-09-26
Release date:2013-10-30
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Multicopper Oxidase CueO mutant E506A
TO BE PUBLISHED
4HAL
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BU of 4hal by Molmil
Multicopper Oxidase CueO mutant E506I
Descriptor: ACETATE ION, Blue copper oxidase CueO, COPPER (II) ION, ...
Authors:Komori, H, Kataoka, K, Sakurai, T, Higuchi, Y.
Deposit date:2012-09-26
Release date:2013-10-30
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Multicopper Oxidase CueO mutant E506I
TO BE PUBLISHED
4NER
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BU of 4ner by Molmil
Multicopper Oxidase CueO (data1)
Descriptor: Blue copper oxidase CueO, COPPER (II) ION, HYDROXIDE ION, ...
Authors:Komori, H, Kataoka, K, Sakurai, T, Higuchi, Y.
Deposit date:2013-10-30
Release date:2014-03-12
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:New insights into the catalytic active-site structure of multicopper oxidases.
Acta Crystallogr.,Sect.D, 70, 2014
4E9S
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BU of 4e9s by Molmil
Multicopper Oxidase CueO (data5)
Descriptor: ACETATE ION, Blue copper oxidase CueO, COPPER (II) ION
Authors:Komori, H, Kataoka, K, Sakurai, T, Higuchi, Y.
Deposit date:2012-03-21
Release date:2013-05-01
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.06 Å)
Cite:Structure and function of the engineered multicopper oxidase CueO from Escherichia coli--deletion of the methionine-rich helical region covering the substrate-binding site.
J.Mol.Biol., 373, 2007
4E9T
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BU of 4e9t by Molmil
Multicopper Oxidase CueO (data6)
Descriptor: ACETATE ION, Blue copper oxidase CueO, COPPER (II) ION
Authors:Komori, H, Kataoka, K, Sakurai, T, Higuchi, Y.
Deposit date:2012-03-21
Release date:2013-05-01
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structure and function of the engineered multicopper oxidase CueO from Escherichia coli--deletion of the methionine-rich helical region covering the substrate-binding site.
J.Mol.Biol., 373, 2007
4EF3
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BU of 4ef3 by Molmil
Multicopper Oxidase CueO (Citrate buffer)
Descriptor: Blue copper oxidase CueO, CITRIC ACID, COPPER (II) ION, ...
Authors:Komori, H, Kataoka, K, Sakurai, T, Higuchi, Y.
Deposit date:2012-03-29
Release date:2013-05-22
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Exogenous acetate ion reaches the type II copper centre in CueO through the water-excretion channel and potentially affects the enzymatic activity.
Acta Crystallogr.,Sect.F, 72, 2016
4E9R
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BU of 4e9r by Molmil
Multicopper Oxidase CueO (data4)
Descriptor: ACETATE ION, Blue copper oxidase CueO, COPPER (II) ION
Authors:Komori, H, Kataoka, K, Sakurai, T, Higuchi, Y.
Deposit date:2012-03-21
Release date:2013-05-01
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structure and function of the engineered multicopper oxidase CueO from Escherichia coli--deletion of the methionine-rich helical region covering the substrate-binding site.
J.Mol.Biol., 373, 2007
4E9Q
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BU of 4e9q by Molmil
Multicopper Oxidase CueO (data2)
Descriptor: ACETATE ION, Blue copper oxidase CueO, COPPER (II) ION
Authors:Komori, H, Kataoka, K, Sakurai, T, Higuchi, Y.
Deposit date:2012-03-21
Release date:2013-05-01
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structure and function of the engineered multicopper oxidase CueO from Escherichia coli--deletion of the methionine-rich helical region covering the substrate-binding site.
J.Mol.Biol., 373, 2007
2D04
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BU of 2d04 by Molmil
Crystal structure of neoculin, a sweet protein with taste-modifying activity.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Curculin, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Shimizu-Ibuka, A, Morita, Y, Terada, T, Asakura, T, Nakajima, K, Iwata, S, Misaka, T, Sorimachi, H, Arai, S, Abe, K.
Deposit date:2005-07-25
Release date:2006-06-20
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.76 Å)
Cite:Crystal structure of neoculin: insights into its sweetness and taste-modifying activity
J.Mol.Biol., 359, 2006
1R1X
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BU of 1r1x by Molmil
Crystal structure of oxy-human hemoglobin Bassett at 2.15 angstrom
Descriptor: CARBON MONOXIDE, Hemoglobin alpha chain, Hemoglobin beta chain, ...
Authors:Abdulmalik, O, Safo, M.K, Lerner, N.B, Ochotorena, J, Dhaikin, Y, Abraham, D.J, Asakura, T.
Deposit date:2003-09-25
Release date:2003-10-07
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Characterization of hemoglobin bassett (alpha94Asp-->Ala), a variant with very low oxygen affinity
Am.J.Hematol., 77, 2004
1R1Y
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BU of 1r1y by Molmil
Crystal structure of deoxy-human hemoglobin Bassett at 1.8 angstrom
Descriptor: Hemoglobin alpha chain, Hemoglobin beta chain, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Abdulmalik, O, Safo, M.K, Lerner, N.B, Ochotorena, J, Dhaikin, Y, Abraham, D.J, Asakura, T.
Deposit date:2003-09-25
Release date:2003-10-07
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Characterization of hemoglobin bassett (alpha94Asp-->Ala), a variant with very low oxygen affinity
Am.J.Hematol., 77, 2004
3UAC
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BU of 3uac by Molmil
Multicopper Oxidase CueO mutant C500SE506Q (data4)
Descriptor: ACETATE ION, Blue copper oxidase CueO, COPPER (II) ION, ...
Authors:Komori, H, Kataoka, K, Sakurai, T, Higuchi, Y.
Deposit date:2011-10-21
Release date:2012-04-11
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:An O-centered structure of the trinuclear copper center in the Cys500Ser/Glu506Gln mutant of CueO and structural changes in low to high X-ray dose conditions.
Angew.Chem.Int.Ed.Engl., 51, 2012
3UAA
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BU of 3uaa by Molmil
Multicopper Oxidase CueO mutant C500SE506Q (data1)
Descriptor: ACETATE ION, Blue copper oxidase CueO, COPPER (II) ION, ...
Authors:Komori, H, Kataoka, K, Sakurai, T, Higuchi, Y.
Deposit date:2011-10-21
Release date:2012-04-11
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:An O-centered structure of the trinuclear copper center in the Cys500Ser/Glu506Gln mutant of CueO and structural changes in low to high X-ray dose conditions.
Angew.Chem.Int.Ed.Engl., 51, 2012

 

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