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3IB7
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CRYSTAL STRUCTURE OF FULL LENGTH RV0805
Descriptor:Icc protein, FE (III) ION, MANGANESE (II) ION, ...
Authors:Podobnik, M., Dermol, U.
Deposit date:2009-07-15
Release date:2009-09-29
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A mycobacterial cyclic AMP phosphodiesterase that moonlights as a modifier of cell wall permeability
J.Biol.Chem., 284, 2009
3IB8
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CRYSTAL STRUCTURE OF FULL LENGTH RV0805 IN COMPLEX WITH 5'-AMP
Descriptor:Icc protein, FE (III) ION, MANGANESE (II) ION, ...
Authors:Podobnik, M., Dermol, U.
Deposit date:2009-07-15
Release date:2009-09-29
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A mycobacterial cyclic AMP phosphodiesterase that moonlights as a modifier of cell wall permeability
J.Biol.Chem., 284, 2009
1EQN
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E.COLI PRIMASE CATALYTIC CORE
Descriptor:DNA PRIMASE
Authors:Podobnik, M., McInerney, P., O'Donnell, M., Kuriyan, J.
Deposit date:2000-04-05
Release date:2000-06-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:A TOPRIM domain in the crystal structure of the catalytic core of Escherichia coli primase confirms a structural link to DNA topoisomerases.
J.Mol.Biol., 300, 2000
1NJF
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NUCLEOTIDE BOUND FORM OF AN ISOLATED E. COLI CLAMP LOADER GAMMA SUBUNIT
Descriptor:DNA polymerase III subunit gamma, ZINC ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ...
Authors:Podobnik, M., Weitze, T.F., O'Donnell, M., Kuriyan, J.
Deposit date:2002-12-30
Release date:2003-04-08
Last modified:2012-03-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Nucleotide-Induced Conformational Changes in an Isolated Escherichia coli DNA Polymerase III Clamp Loader Subunit
Structure, 11, 2003
1NJG
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NUCLEOTIDE-FREE FORM OF AN ISOLATED E. COLI CLAMP LOADER GAMMA SUBUNIT
Descriptor:DNA polymerase III subunit gamma, ZINC ION, SULFATE ION
Authors:Podobnik, M., Weitze, T.F., O'Donnell, M., Kuriyan, J.
Deposit date:2002-12-30
Release date:2003-04-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Nucleotide-Induced Conformational Changes in an Isolated Escherichia coli DNA Polymerase III Clamp Loader Subunit
Structure, 11, 2003
5EC5
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CRYSTAL STRUCTURE OF LYSENIN PORE
Descriptor:Lysenin, MERCURIBENZOIC ACID, MERCURY (II) ION
Authors:Podobnik, M., Savory, P., Rojko, N., Kisovec, M., Bruce, M., Jayasinghe, L., Anderluh, G.
Deposit date:2015-10-20
Release date:2016-05-18
Last modified:2016-05-25
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Crystal structure of an invertebrate cytolysin pore reveals unique properties and mechanism of assembly.
Nat Commun, 7, 2016
3PBH
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REFINED CRYSTAL STRUCTURE OF HUMAN PROCATHEPSIN B AT 2.5 ANGSTROM RESOLUTION
Descriptor:PROCATHEPSIN B
Authors:Podobnik, M., Turk, D., Kuhelj, R., Turk, V.
Deposit date:1997-02-13
Release date:1998-02-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of the wild-type human procathepsin B at 2.5 A resolution reveals the native active site of a papain-like cysteine protease zymogen.
J.Mol.Biol., 271, 1997
4OLL
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CAMP-BINDING ACYLTRANSFERASE FROM MYCOBACTERIUM SMEGMATIS
Descriptor:Acetyltransferase Pat, MERCURY (II) ION, CALCIUM ION
Authors:Podobnik, M., Rebolj, K., Visweswariah, S.S.
Deposit date:2014-01-24
Release date:2014-04-30
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Allostery and Conformational Dynamics in cAMP-binding Acyltransferases.
J.Biol.Chem., 289, 2014
4ONU
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CAMP-BINDING ACYLTRANSFERASE FROM MYCOBACTERIUM SMEGMATIS, E234A MUTANT
Descriptor:Acetyltransferase Pat, CALCIUM ION
Authors:Podobnik, M., Rebolj, K., Visweswariah, S.S.
Deposit date:2014-01-29
Release date:2014-04-30
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Allostery and Conformational Dynamics in cAMP-binding Acyltransferases.
J.Biol.Chem., 289, 2014
4ORF
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CAMP-BINDING ACYLTRANSFERASE FROM MYCOBACTERIUM SMEGMATIS, MUTANT R95K
Descriptor:Acetyltransferase Pat, CHLORIDE ION
Authors:Podobnik, M., Rebolj, K., Visweswariah, S.S.
Deposit date:2014-02-11
Release date:2014-04-30
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Allostery and Conformational Dynamics in cAMP-binding Acyltransferases.
J.Biol.Chem., 289, 2014
3RL3
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RAT METALLOPHOSPHODIESTERASE MPPED2
Descriptor:Metallophosphoesterase MPPED2, 1,2-ETHANEDIOL, MANGANESE (II) ION, ...
Authors:Podobnik, M., Dermol, U.
Deposit date:2011-04-19
Release date:2011-08-10
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Unique utilization of a phosphoprotein phosphatase fold by a mammalian phosphodiesterase associated with WAGR syndrome.
J.Mol.Biol., 412, 2011
3RL4
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RAT METALLOPHOSPHODIESTERASE MPPED2 G252H MUTANT
Descriptor:Metallophosphoesterase MPPED2, MANGANESE (II) ION, CHLORIDE ION, ...
Authors:Podobnik, M., Dermol, U.
Deposit date:2011-04-19
Release date:2011-08-10
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.29 Å)
Cite:Unique utilization of a phosphoprotein phosphatase fold by a mammalian phosphodiesterase associated with WAGR syndrome.
J.Mol.Biol., 412, 2011
3RL5
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RAT METALLOPHOSPHODIESTERASE MPPED2 H67R MUTANT
Descriptor:Metallophosphoesterase MPPED2, CALCIUM ION, NITRATE ION, ...
Authors:Podobnik, M., Dermol, U.
Deposit date:2011-04-19
Release date:2011-08-10
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:Unique utilization of a phosphoprotein phosphatase fold by a mammalian phosphodiesterase associated with WAGR syndrome.
J.Mol.Biol., 412, 2011
6HXX
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POTATO VIRUS Y
Descriptor:Coat protein, RNA (5'-R(P*UP*UP*UP*UP*U)-3')
Authors:Podobnik, M., Kezar, A., Novacek, J., Polak, M.
Deposit date:2018-10-18
Release date:2019-08-07
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural basis for the multitasking nature of the potato virus Y coat protein.
Sci Adv, 5, 2019
6HXZ
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VIRUS-LIKE PARTICLES BASED ON POTATO VIRUS Y
Descriptor:Polyprotein
Authors:Podobnik, M., Kezar, A., Novacek, J.
Deposit date:2018-10-18
Release date:2019-08-07
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Structural basis for the multitasking nature of the potato virus Y coat protein.
Sci Adv, 5, 2019
1PBH
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CRYSTAL STRUCTURE OF HUMAN RECOMBINANT PROCATHEPSIN B AT 3.2 ANGSTROM RESOLUTION
Descriptor:PROCATHEPSIN B
Authors:Podobnik, M., Turk, D.
Deposit date:1997-02-14
Release date:1998-02-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structures of human procathepsin B at 3.2 and 3.3 Angstroms resolution reveal an interaction motif between a papain-like cysteine protease and its propeptide.
FEBS Lett., 384, 1996
2PBH
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CRYSTAL STRUCTURE OF HUMAN PROCATHEPSIN B AT 3.3 ANGSTROM RESOLUTION
Descriptor:PROCATHEPSIN B
Authors:Podobnik, M., Turk, D., Kuhelj, R., Turk, V.
Deposit date:1997-02-14
Release date:1998-02-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Crystal structures of human procathepsin B at 3.2 and 3.3 Angstroms resolution reveal an interaction motif between a papain-like cysteine protease and its propeptide.
FEBS Lett., 384, 1996
5NNW
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NLPPYA IN COMPLEX WITH GLUCOSAMINE
Descriptor:25 kDa protein elicitor, MAGNESIUM ION, D-GLUCOSAMINE
Authors:Podobnik, M., Anderluh, G., Lenarcic, T.
Deposit date:2017-04-10
Release date:2017-12-27
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Eudicot plant-specific sphingolipids determine host selectivity of microbial NLP cytolysins.
Science, 358, 2017
5NO9
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NLPPYA IN COMPLEX WITH MANNOSAMINE
Descriptor:25 kDa protein elicitor, MAGNESIUM ION, alpha-D-Mannosamine
Authors:Podobnik, M., Anderluh, G., Lenarcic, T.
Deposit date:2017-04-11
Release date:2017-12-27
Last modified:2018-01-10
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Eudicot plant-specific sphingolipids determine host selectivity of microbial NLP cytolysins.
Science, 358, 2017
2HY1
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CRYSTAL STRUCTURE OF RV0805
Descriptor:Rv0805, FE (III) ION, MANGANESE (II) ION, ...
Authors:Shenoy, A.R., Capuder, M., Draskovic, P., Lamba, D., Visweswariah, S.S., Podobnik, M.
Deposit date:2006-08-04
Release date:2006-12-26
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.932 Å)
Cite:Structural and Biochemical Analysis of the Rv0805 Cyclic Nucleotide Phosphodiesterase from Mycobacterium tuberculosis.
J.Mol.Biol., 365, 2007
2HYO
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CRYSTAL STRUCTURE OF RV0805 N97A MUTANT
Descriptor:Rv0805N97A, FE (III) ION, MANGANESE (II) ION
Authors:Shenoy, A.R., Capuder, M., Draskovic, P., Lamba, D., Visweswariah, S.S., Podobnik, M.
Deposit date:2006-08-07
Release date:2006-12-26
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural and Biochemical Analysis of the Rv0805 Cyclic Nucleotide Phosphodiesterase from Mycobacterium tuberculosis.
J.Mol.Biol., 365, 2007
2HYP
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CRYSTAL STRUCTURE OF RV0805 D66A MUTANT
Descriptor:Hypothetical protein RV0805, FE (III) ION, MANGANESE (II) ION, ...
Authors:Shenoy, A.R., Capuder, M., Draskovic, P., Lamba, D., Visweswariah, S.S., Podobnik, M.
Deposit date:2006-08-07
Release date:2006-12-26
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural and Biochemical Analysis of the Rv0805 Cyclic Nucleotide Phosphodiesterase from Mycobacterium tuberculosis.
J.Mol.Biol., 365, 2007
1XXH
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ATPGS BOUND E. COLI CLAMP LOADER COMPLEX
Descriptor:DNA polymerase III, delta subunit, DNA polymerase III subunit gamma, ...
Authors:Kazmirski, S.L., Podobnik, M., Weitze, T.F., O'Donnell, M., Kuriyan, J.
Deposit date:2004-11-05
Release date:2004-12-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.45 Å)
Cite:Structural analysis of the inactive state of the Escherichia coli DNA polymerase clamp-loader complex
Proc.Natl.Acad.Sci.USA, 101, 2004
1XXI
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ADP BOUND E. COLI CLAMP LOADER COMPLEX
Descriptor:DNA polymerase III, delta subunit, DNA polymerase III subunit gamma, ...
Authors:Kazmirski, S.L., Podobnik, M., Weitze, T.F., O'Donnell, M., Kuriyan, J.
Deposit date:2004-11-05
Release date:2004-12-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (4.1 Å)
Cite:Structural analysis of the inactive state of the Escherichia coli DNA polymerase clamp-loader complex
Proc.Natl.Acad.Sci.USA, 101, 2004
1K3B
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CRYSTAL STRUCTURE OF HUMAN DIPEPTIDYL PEPTIDASE I (CATHEPSIN C): EXCLUSION DOMAIN ADDED TO AN ENDOPEPTIDASE FRAMEWORK CREATES THE MACHINE FOR ACTIVATION OF GRANULAR SERINE PROTEASES
Descriptor:dipeptydil-peptidase I exclusion domain, dipeptydil-peptidase I light chain, dipeptydil-peptidase I heavy chain, ...
Authors:Turk, D., Janjic, V., Stern, I., Podobnik, M., Lamba, D., Dahl, S.W., Lauritzen, C., Pedersen, J., Turk, V., Turk, B.
Deposit date:2001-10-02
Release date:2002-04-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structure of human dipeptidyl peptidase I (cathepsin C): exclusion domain added to an endopeptidase framework creates the machine for activation of granular serine proteases.
EMBO J., 20, 2001
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