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6ET6
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BU of 6et6 by Molmil
Crystal structure of muramidase from Acinetobacter baumannii AB 5075UW prophage
Descriptor: GLYCEROL, Lysozyme, SULFATE ION
Authors:Boyko, K.M, Nikolaeva, A.Y, Sykilinda, N.N, Shneider, M.M, Miroshnikov, K.A, Popov, V.O.
Deposit date:2017-10-25
Release date:2018-09-05
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structure of anAcinetobacterBroad-Range Prophage Endolysin Reveals a C-Terminal alpha-Helix with the Proposed Role in Activity against Live Bacterial Cells.
Viruses, 10, 2018
8C0N
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BU of 8c0n by Molmil
Crystal structure of the red form of the mTagFT fluorescent timer
Descriptor: Blue-to-red TagFT fluorescent timer
Authors:Boyko, K.M, Nikolaeva, A.Y, Vlaskina, A.V, Agapova, Y.K, Subach, O.M, Popov, V.O, Subach, F.V.
Deposit date:2022-12-19
Release date:2023-03-08
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Blue-to-Red TagFT, mTagFT, mTsFT, and Green-to-FarRed mNeptusFT2 Proteins, Genetically Encoded True and Tandem Fluorescent Timers.
Int J Mol Sci, 24, 2023
9J0U
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BU of 9j0u by Molmil
Crystal structure of monomeric PLP-dependent transaminase from Desulfobacula toluolica in F 41 3 2 space group
Descriptor: Dat: predicted D-alanine aminotransferase, PYRIDOXAL-5'-PHOSPHATE
Authors:Matyuta, I.O, Bakunova, A.K, Nikolaeva, A.Y, Rakitina, T.V, Bezsudnova, E.Y, Popov, V.O, Boyko, K.M.
Deposit date:2024-08-03
Release date:2024-09-18
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:High/low resolution monomeric PLP-dependent transaminase from Desulfobacula toluolica
To Be Published
9J0V
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BU of 9j0v by Molmil
Crystal structure of monomeric PLP-dependent transaminase from Desulfobacula toluolica in P 21 21 21 space group
Descriptor: DI(HYDROXYETHYL)ETHER, Dat: predicted D-alanine aminotransferase, GLYCEROL, ...
Authors:Matyuta, I.O, Bakunova, A.K, Nikolaeva, A.Y, Rakitina, T.V, Bezsudnova, E.Y, Popov, V.O, Boyko, K.M.
Deposit date:2024-08-03
Release date:2024-09-18
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:High/low resolution monomeric PLP-dependent transaminase from Desulfobacula toluolica
To Be Published
8YTR
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BU of 8ytr by Molmil
The structure of Cu(II)-CopC from Thioalkalivibrio paradoxus
Descriptor: COPPER (II) ION, CopC domain-containing protein, DI(HYDROXYETHYL)ETHER
Authors:Kulikova, O.G, Solovieva, A.Y, Varfolomeeva, L.A, Dergousova, N.I, Nikolaeva, A.Y, Boyko, K.M, Tikhonova, T.V, Popov, V.O.
Deposit date:2024-03-26
Release date:2024-04-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The structure of Cu(II)-CopC from Thioalkalivibrio paradoxus
To Be Published
7B1X
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BU of 7b1x by Molmil
Crystal structure of cold-active esterase PMGL3 from permafrost metagenomic library
Descriptor: esterase PMGL3
Authors:Boyko, K.M, Nikolaeva, A.Y, Petrovskaya, L.E, Kryukova, M.V, Kryukova, E.A, Korzhenevsky, D.A, Lomakina, G.Y, Novototskaya-Vlasova, K.A, Rivkina, E.M, Dolgikh, D.A, Kirpichnikov, M.P, Popov, V.O.
Deposit date:2020-11-25
Release date:2021-11-03
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural and Biochemical Characterization of a Cold-Active PMGL3 Esterase with Unusual Oligomeric Structure.
Biomolecules, 11, 2021
7ARZ
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BU of 7arz by Molmil
Ternary complex of NAD-dependent formate dehydrogenase from Physcomitrium patens
Descriptor: AZIDE ION, Formate dehydrogenase, mitochondrial, ...
Authors:Goryaynova, D.A, Nikolaeva, A.Y, Pometun, A.A, Savin, S.S, Parshin, P.D, Popov, V.O, Tishkov, V.I, Boyko, K.M.
Deposit date:2020-10-26
Release date:2021-11-03
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Ternary complex of NAD-dependent formate dehydrogenase from Physcomitrium patens
To Be Published
5JFQ
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BU of 5jfq by Molmil
Geranylgeranyl Pyrophosphate Synthetase from archaeon Geoglobus acetivorans
Descriptor: Geranylgeranyl Pyrophosphate Synthetase
Authors:Petrova, T, Boyko, K.M, Nikolaeva, A.Y, Stekhanova, T.N, Mardanov, A.V, Rakitin, A.L, Ravin, N.V, Popov, V.O.
Deposit date:2016-04-19
Release date:2017-05-24
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Structural characterization of geranylgeranyl pyrophosphate synthase GACE1337 from the hyperthermophilic archaeon Geoglobus acetivorans.
Extremophiles, 22, 2018
7Z79
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BU of 7z79 by Molmil
Crystal structure of aminotransferase-like protein from Variovorax paradoxus
Descriptor: Aminotransferase, class 4, DI(HYDROXYETHYL)ETHER, ...
Authors:Boyko, K.M, Matyuta, I.O, Nikolaeva, A.Y, Khrenova, M.G, Rakitina, T.V, Popov, V.O, Bezsudnova, E.Y.
Deposit date:2022-03-15
Release date:2022-04-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A Puzzling Protein from Variovorax paradoxus Has a PLP Fold Type IV Transaminase Structure and Binds PLP without Catalytic Lysine
Crystals, 12, 2022
6THQ
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BU of 6thq by Molmil
Crystal structure of branched-chain aminotransferase from thermophilic archaea Thermoproteus uzoniensis with norvaline
Descriptor: 2-[O-PHOSPHONOPYRIDOXYL]-AMINO-PENTANOIC ACID, Branched-chain-amino-acid aminotransferase, PYRIDOXAL-5'-PHOSPHATE
Authors:Boyko, K.M, Nikolaeva, A.Y, Bezsudnova, E.Y, Popov, V.O.
Deposit date:2019-11-21
Release date:2020-09-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Three-Dimensional Structure of Branched-Chain Amino Acid Transaminase from Thermoproteus uzoniensis in Complex with L-Norvaline
Crystallography Reports, 2020
6TTB
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BU of 6ttb by Molmil
Crystal structure of NAD-dependent formate dehydrogenase from Staphylococcus aureus in complex with NAD
Descriptor: Formate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Boyko, K.M, Pometun, A.A, Nikolaeva, A.Y, Kargov, I.S, Yurchenko, T.S, Savin, S.S, Popov, V.O, Tishkov, V.I.
Deposit date:2019-12-26
Release date:2021-01-13
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of NAD-dependent formate dehydrogenase from Staphylococcus aureus in complex with NAD
To Be Published
6ER1
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BU of 6er1 by Molmil
Crystal structure of BTB-domain of CP190 from D.melanogaster at high resolution
Descriptor: Centrosome-associated zinc finger protein CP190, PHOSPHATE ION
Authors:Boyko, K.M, Nikolaeva, A.Y, Bonchuk, A.N, Kachalova, G.S, Georgiev, P.G, Popov, V.O.
Deposit date:2017-10-16
Release date:2018-08-29
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Purification, Isolation, Crystallization, and Preliminary X-ray Diffraction Study of the BTB Domain of the Centrosomal Protein 190 from Drosophila Melanogaster
Crystallography Reports, 62, 2017
6ERK
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BU of 6erk by Molmil
Crystal structure of diaminopelargonic acid aminotransferase from Psychrobacter cryohalolentis
Descriptor: 1,2-ETHANEDIOL, Aminotransferase, GLYCEROL, ...
Authors:Boyko, K.M, Nikolaeva, A.Y, Bezsudnova, E.Y, Stekhanova, T.N, Rakitina, T.V, Popov, V.O.
Deposit date:2017-10-18
Release date:2018-09-26
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Diaminopelargonic acid transaminase from Psychrobacter cryohalolentis is active towards (S)-(-)-1-phenylethylamine, aldehydes and alpha-diketones.
Appl. Microbiol. Biotechnol., 102, 2018
6Z1Y
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BU of 6z1y by Molmil
Crystal structure of type-I ribosome-inactivating protein trichobakin (TBK)
Descriptor: SODIUM ION, Trichobakin
Authors:Boyko, K.M, Nikolaeva, A.Y, Britikov, V.V, Bocharov, E.V, Britikova, E.V, Le, T.B.T, Phan, C.V, Popov, V.O, Usanov, S.A.
Deposit date:2020-05-14
Release date:2020-05-27
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of type-I ribosome-inactivating protein trichobakin (TBK)
To Be Published
6ZL7
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BU of 6zl7 by Molmil
CRYSTAL STRUCTURE OF C173S MUTATION IN THE PMGL2 ESTERASE FROM PERMAFROST METAGENOMIC LIBRARY
Descriptor: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, MAGNESIUM ION, PMGL2
Authors:Goryaynova, D.A, Boyko, K.M, Nikolaeva, A.Y, Korzhenevskiy, D.A, Kryukova, M.V, Petrovskaya, L.E, Novototskaya-Vlasova, K.A, Rivkina, E.M, Dolgikh, D.A, Kirpichnikov, M.P, Popov, V.O.
Deposit date:2020-06-30
Release date:2020-07-08
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:CRYSTAL STRUCTURE OF C173S MUTATION IN THE PMGL2 ESTERASE FROM PERMAFROST METAGENOMIC LIBRARY
To Be Published
5IJG
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BU of 5ijg by Molmil
Crystal structure of O-acetylhomoserine sulfhydrolase from Brucella melitensis at 2.0 A resolution
Descriptor: Cys/Met metabolism pyridoxal-phosphate-dependent enzyme, GLYCEROL, PYRIDOXAL-5'-PHOSPHATE
Authors:Boyko, K.M, Nikolaeva, A.Y, Koolikova, V.V, Kotlov, M.I, Demidkina, T.V, Popov, V.O.
Deposit date:2016-03-02
Release date:2017-04-05
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of O-acetylhomoserine sulfhydrolase from Brucella melitensis at 2.0 A resolution
To Be Published
6XU4
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BU of 6xu4 by Molmil
Crystal structure of the genetically-encoded FGCaMP calcium indicator in its calcium-bound state
Descriptor: CALCIUM ION, FGCamp
Authors:Boyko, K.M, Nikolaeva, A.Y, Korzhenevskiy, D.A, Barykina, N.V, Subach, O.M, Subach, F.V.
Deposit date:2020-01-17
Release date:2020-04-15
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.18 Å)
Cite:FGCaMP7, an Improved Version of Fungi-Based Ratiometric Calcium Indicator for In Vivo Visualization of Neuronal Activity.
Int J Mol Sci, 21, 2020
6XW2
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BU of 6xw2 by Molmil
Crystal structure of the bright genetically encoded calcium indicator NCaMP7 based on mNeonGreen fluorescent protein
Descriptor: CALCIUM ION, Genetically encoded calcium indicator NCaMP7 based on mNeonGreen fluorescent protein, SULFATE ION
Authors:Boyko, K.M, Nikolaeva, A.Y, Korzhenevskiy, D.A, Lazarenko, V.A, Subach, O.M, Subach, F.V.
Deposit date:2020-01-22
Release date:2020-01-29
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Novel Genetically Encoded Bright Positive Calcium Indicator NCaMP7 Based on the mNeonGreen Fluorescent Protein.
Int J Mol Sci, 21, 2020
7OIN
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BU of 7oin by Molmil
Crystal structure of LSSmScarlet - a genetically encoded red fluorescent protein with a large Stokes shift
Descriptor: LSSmScarlet - Genetically Encoded Red Fluorescent Proteins with a Large Stokes Shift, SODIUM ION, SULFATE ION
Authors:Boyko, K.M, Nikolaeva, A.Y, Dorovatovskii, P.V, Subach, O.M, Vlaskina, A.V, Agapova, Y.K, Ivashkina, O.I, Popov, V.O, Subach, F.V.
Deposit date:2021-05-12
Release date:2022-02-16
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:LSSmScarlet, dCyRFP2s, dCyOFP2s and CRISPRed2s, Genetically Encoded Red Fluorescent Proteins with a Large Stokes Shift.
Int J Mol Sci, 22, 2021
7P7X
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BU of 7p7x by Molmil
Crystal structure of D-amino acid transaminase from Haliscomenobacter hydrossis (holo form).
Descriptor: ACETATE ION, Aminotransferase class IV, PHOSPHATE ION, ...
Authors:Boyko, K.M, Nikolaeva, A.Y, Bakunova, A.K, Rakitina, T.V, Bezsudnova, E.Y, Popov, V.O.
Deposit date:2021-07-20
Release date:2021-07-28
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Uncommon Active Site of D-Amino Acid Transaminase from Haliscomenobacter hydrossis : Biochemical and Structural Insights into the New Enzyme.
Molecules, 26, 2021
7P1Z
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BU of 7p1z by Molmil
Novel GH12 endogluconase from Aspergillus cervinus
Descriptor: ACETATE ION, DI(HYDROXYETHYL)ETHER, Glycoside hydrolase, ...
Authors:Lazarenko, V.A, Rykov, S.V, Nikolaeva, A.Y, Berezina, O.V, Akentyev, F.I.
Deposit date:2021-07-03
Release date:2021-07-21
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Unusual substrate specificity in GH family 12: structure-function analysis of glucanases Bgh12A and Xgh12B from Aspergillus cervinus, and Egh12 from Thielavia terrestris.
Appl.Microbiol.Biotechnol., 106, 2022
7P8O
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BU of 7p8o by Molmil
Crystal structure of D-aminoacid transaminase from Haliscomenobacter hydrossis in its intermediate form
Descriptor: Aminotransferase class IV, MAGNESIUM ION, SULFATE ION
Authors:Matyuta, I.O, Boyko, K.M, Bakunova, A.K, Nikolaeva, A.Y, Rakitina, T.V, Bezsudnova, E.Y, Popov, V.O.
Deposit date:2021-07-23
Release date:2022-08-03
Last modified:2024-07-03
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of D-aminoacid transaminase from Haliscomenobacter hydrossis in its apo form
To Be Published
8PNW
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BU of 8pnw by Molmil
Crystal structure of D-amino acid aminotransferase from Blastococcus saxobsidens in holo form with PLP
Descriptor: Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase, CHLORIDE ION, PYRIDOXAL-5'-PHOSPHATE
Authors:Matyuta, I.O, Boyko, K.M, Nikolaeva, A.Y, Shilova, S.A, Popov, V.O.
Deposit date:2023-07-03
Release date:2023-10-25
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Expanded Substrate Specificity in D-Amino Acid Transaminases: A Case Study of Transaminase from Blastococcus saxobsidens.
Int J Mol Sci, 24, 2023
8PNY
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BU of 8pny by Molmil
Crystal structure of D-amino acid aminotransferase from Blastococcus saxobsidens complexed with phenylhydrazine and in its apo form
Descriptor: Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase, [6-methyl-5-oxidanyl-4-[(2-phenylhydrazinyl)methyl]pyridin-3-yl]methyl dihydrogen phosphate
Authors:Matyuta, I.O, Boyko, K.M, Nikolaeva, A.Y, Shilova, S.A, Popov, V.O.
Deposit date:2023-07-03
Release date:2023-10-25
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Expanded Substrate Specificity in D-Amino Acid Transaminases: A Case Study of Transaminase from Blastococcus saxobsidens.
Int J Mol Sci, 24, 2023
8YQ4
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BU of 8yq4 by Molmil
Structure of mBaoJin2
Descriptor: CHLORIDE ION, GLYCEROL, SULFATE ION, ...
Authors:Boyko, K.M, Nikolaeva, A.Y, Minyaev, M.E, Kuzmicheva, T.P, Vlaskina, A.V, Popov, V.O, Pyatkevich, K.D, Subach, F.V.
Deposit date:2024-03-19
Release date:2024-03-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of mBaoJin2
To Be Published

 

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