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6JO3
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CRYSTAL STRUCTURE OF (S)-3-O-GERANYLGERANYLGLYCERYL PHOSPHATE SYNTHASE FROM THERMOPLASMA ACIDOPHILUM IN COMPLEX WITH SUBSTRATE SN-GLYCEROL-1-PHOSPHATE
Descriptor:Geranylgeranylglyceryl phosphate synthase, SN-GLYCEROL-1-PHOSPHATE
Authors:Nemoto, N., Miyazono, K., Tanokura, M., Yamagishi, A.
Deposit date:2019-03-20
Release date:2019-04-03
Last modified:2019-07-17
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Crystal structure of (S)-3-O-geranylgeranylglyceryl phosphate synthase from Thermoplasma acidophilum in complex with the ubstrate sn-glycerol 1-phosphate
Acta Crystallogr.,Sect.F, 75, 2019
3VVT
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CRYSTAL STRUCTURE OF RECONSTRUCTED ARCHAEAL ANCESTRAL NDK, ARC1
Descriptor:Nucleoside diphosphate kinase
Authors:Nemoto, N., Miyazono, K., Kimura, M., Yokobori, S., Akanuma, S., Tanokura, M., Yamagishi, A.
Deposit date:2012-07-27
Release date:2013-06-19
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Experimental evidence for the thermophilicity of ancestral life
Proc.Natl.Acad.Sci.USA, 110, 2013
3VVU
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CRYSTAL STRUCTURE OF RECONSTRUCTED BACTERIAL ANCESTRAL NDK, BAC1
Descriptor:Nucleoside diphosphate kinase
Authors:Nemoto, N., Miyazono, K., Kimura, M., Yokobori, S., Akanuma, S., Tanokura, M., Yamagishi, A.
Deposit date:2012-07-27
Release date:2013-06-19
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Experimental evidence for the thermophilicity of ancestral life
Proc.Natl.Acad.Sci.USA, 110, 2013
1IW4
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SOLUTION STRUCTURE OF ASCIDIAN TRYPSIN INHIBITOR
Descriptor:trypsin inhibitor
Authors:Hemmi, H., Yoshida, T., Kumazaki, T., Nemoto, N., Hasegawa, J., Nishioka, F., Kyogoku, Y., Yokosawa, H., Kobayashi, Y.
Deposit date:2002-04-19
Release date:2002-08-28
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of ascidian trypsin inhibitor determined by nuclear magnetic resonance spectroscopy.
Biochemistry, 41, 2002
1IX5
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SOLUTION STRUCTURE OF THE METHANOCOCCUS THERMOLITHOTROPHICUS FKBP
Descriptor:FKBP
Authors:Suzuki, R., Nagata, K., Kawakami, M., Nemoto, N., Furutani, M., Adachi, K., Maruyama, T., Tanokura, M.
Deposit date:2002-06-12
Release date:2003-06-10
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Three-dimensional Solution Structure of an Archaeal FKBP with a Dual Function of Peptidyl Prolyl cis-trans Isomerase and Chaperone-like Activities
J.MOL.BIOL., 328, 2003
1IY3
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SOLUTION STRUCTURE OF THE HUMAN LYSOZYME AT 4 DEGREE C
Descriptor:Lysozyme
Authors:Kumeta, H., Miura, A., Kobashigawa, Y., Miura, K., Oka, C., Nitta, K., Nemoto, N., Tsuda, S.
Deposit date:2002-07-15
Release date:2002-07-31
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Low-temperature-induced structural changes in human lysozyme elucidated by three-dimensional NMR spectroscopy
Biochemistry, 42, 2003
1IY4
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SOLUTION STRUCTURE OF THE HUMAN LYSOZYME AT 35 DEGREE C
Descriptor:Lysozyme
Authors:Kumeta, H., Miura, A., Kobashigawa, Y., Miura, K., Oka, C., Nitta, K., Nemoto, N., Tsuda, S.
Deposit date:2002-07-15
Release date:2002-07-31
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Low-temperature-induced structural changes in human lysozyme elucidated by three-dimensional NMR spectroscopy
Biochemistry, 42, 2003
1WFH
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SOLUTION STRUCTRUE OF THE ZF-AN1 DOMAIN FROM ARABIDOPSIS THALIANA AT2G36320 PROTEIN
Descriptor:zinc finger (AN1-like) family protein, ZINC ION
Authors:Tomizawa, T., Kigawa, T., Nemoto, N., Koshiba, S., Inoue, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-26
Release date:2004-11-26
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structrue of the zf-AN1 domain from Arabidopsis thaliana At2g36320 protein
To be Published
1WFP
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SOLUTION STRUCTURE OF THE ZF-AN1 DOMAIN FROM ARABIOPSIS THALIANA F5O11.17 PROTEIN
Descriptor:zinc finger (AN1-like) family protein, ZINC ION
Authors:Tomizawa, T., Kigawa, T., Nemoto, N., Koshiba, S., Inoue, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-26
Release date:2004-11-26
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the zf-AN1 domain from Arabiopsis thaliana F5O11.17 protein
To be Published
1WHD
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SOLUTION STRUCTURE OF THE PDZ DOMAIN OF RGS3
Descriptor:regulator of G-protein signaling 3
Authors:Nakanishi, T., Nemoto, N., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-28
Release date:2004-11-28
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the PDZ domain of RGS3
To be Published
1WIC
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SOLUTION STRUCTURE OF THE MSP DOMAIN OF RIKEN CDNA 6030424E15
Descriptor:Hypothetical Protein RIKEN cDNA 6030424E15
Authors:Endo, H., Asakura, K., Nemoto, N., Takasugi, K., Izumie, K., Yoshida, M., Hayashi, F., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-28
Release date:2004-11-28
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the MSP domain of RIKEN cDNA 6030424E15
TO BE PUBLISHED
1WST
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CRYSTAL STRUCTURE OF MULTIPLE SUBSTRATE AMINOTRANSFERASE (MSAT) FROM THERMOCOCCUS PROFUNDUS
Descriptor:multiple substrate aminotransferase, PYRIDOXAL-5'-PHOSPHATE
Authors:Lee, W.C., Manabe, F., Nemoto, N., Tamakoshi, M., Tanokura, M., Yamagishi, A.
Deposit date:2004-11-10
Release date:2005-10-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of multiple substrate aminotransferase (MsAT) from Thermococcus profundus
To be Published
1C89
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NMR STRUCTURE OF INTRAMOLECULAR DIMER ANTIFREEZE PROTEIN RD3, 40 SA STRUCTURES
Descriptor:ANTIFREEZE PROTEIN TYPE III
Authors:Miura, K., Tsuda, S.
Deposit date:2000-05-04
Release date:2001-02-28
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR analysis of type III antifreeze protein intramolecular dimer. Structural basis for enhanced activity.
J.Biol.Chem., 276, 2001
1C8A
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NMR STRUCTURE OF INTRAMOLECULAR DIMER ANTIFREEZE PROTEIN RD3, 40 SA STRUCTURES
Descriptor:PROTEIN (ANTIFREEZE PROTEIN TYPE III)
Authors:Miura, K., Tsuda, S.
Deposit date:2000-05-04
Release date:2001-02-28
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR analysis of type III antifreeze protein intramolecular dimer. Structural basis for enhanced activity.
J.Biol.Chem., 276, 2001
3NLA
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NMR STRUCTURE OF THE N-TERMINAL DOMAIN WITH A LINKER PORTION OF ANTARCTIC EEL POUT ANTIFREEZE PROTEIN RD3, 40 STRUCTURES
Descriptor:ANTIFREEZE PROTEIN RD3 TYPE III
Authors:Miura, K., Ohgiya, S., Hoshino, T., Nemoto, N., Hikichi, K., Tsuda, S.
Deposit date:1998-02-24
Release date:1999-02-23
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural basis for the binding of a globular antifreeze protein to ice.
Nature, 384, 1996
3RDN
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NMR STRUCTURE OF THE N-TERMINAL DOMAIN WITH A LINKER PORTION OF ANTARCTIC EEL POUT ANTIFREEZE PROTEIN RD3, MINIMIZED AVERAGE STRUCTURE
Descriptor:ANTIFREEZE PROTEIN RD3 TYPE III
Authors:Miura, K., Ohgiya, S., Hoshino, T., Nemoto, N., Hikichi, K., Tsuda, S.
Deposit date:1998-02-24
Release date:1999-02-23
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural basis for the binding of a globular antifreeze protein to ice.
Nature, 384, 1996