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3WWK
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BU of 3wwk by Molmil
Crystal structure of CLEC-2 in complex with rhodocytin
Descriptor: C-type lectin domain family 1 member B, Snaclec rhodocytin subunit alpha, Snaclec rhodocytin subunit beta
Authors:Nagae, M, Morita-Matsumoto, K, Kato, M, Kato-Kaneko, M, Kato, Y, Yamaguchi, Y.
Deposit date:2014-06-20
Release date:2014-10-22
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.98 Å)
Cite:A Platform of C-type Lectin-like Receptor CLEC-2 for Binding O-Glycosylated Podoplanin and Nonglycosylated Rhodocytin
Structure, 22, 2014
3WSR
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BU of 3wsr by Molmil
Crystal structure of CLEC-2 in complex with O-glycosylated podoplanin
Descriptor: C-type lectin domain family 1 member B, Peptide from Podoplanin, beta-D-galactopyranose-(1-3)-[N-acetyl-alpha-neuraminic acid-(2-6)]2-acetamido-2-deoxy-alpha-D-galactopyranose
Authors:Nagae, M, Morita-Matsumoto, K, Kato, M, Kato-Kaneko, M, Kato, Y, Yamaguchi, Y.
Deposit date:2014-03-20
Release date:2014-10-22
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:A Platform of C-type Lectin-like Receptor CLEC-2 for Binding O-Glycosylated Podoplanin and Nonglycosylated Rhodocytin
Structure, 22, 2014
3VYJ
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BU of 3vyj by Molmil
Crystal structure of C-type lectin domain of murine dendritic cell inhibitory receptor 2 (apo form)
Descriptor: C-type lectin domain family 4, member a4, SULFATE ION
Authors:Nagae, M, Yamanaka, K, Hanashima, S, Ikeda, A, Satoh, T, Matsumoto, N, Yamamoto, K, Yamaguchi, Y.
Deposit date:2012-09-26
Release date:2013-10-02
Last modified:2013-12-11
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Recognition of Bisecting N-Acetylglucosamine: STRUCTURAL BASIS FOR ASYMMETRIC INTERACTION WITH THE MOUSE LECTIN DENDRITIC CELL INHIBITORY RECEPTOR 2
J.Biol.Chem., 288, 2013
3VYK
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BU of 3vyk by Molmil
Crystal structure of C-type lectin domain of murine dendritic cell inhibitory receptor 2 in complex with N-glycan
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)][2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)]methyl alpha-D-mannopyranoside, C-type lectin domain family 4, ...
Authors:Nagae, M, Yamanaka, K, Hanashima, S, Ikeda, A, Satoh, T, Matsumoto, N, Yamamoto, K, Yamaguchi, Y.
Deposit date:2012-09-26
Release date:2013-10-02
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Recognition of Bisecting N-Acetylglucosamine: STRUCTURAL BASIS FOR ASYMMETRIC INTERACTION WITH THE MOUSE LECTIN DENDRITIC CELL INHIBITORY RECEPTOR 2
J.Biol.Chem., 288, 2013
5GU5
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BU of 5gu5 by Molmil
Crystal structure of p24gamma2 GOLD domain determined by sulfur-SAD
Descriptor: BROMIDE ION, Transmembrane emp24 domain-containing protein 5
Authors:Nagae, M, Yamaguchi, Y.
Deposit date:2016-08-25
Release date:2017-01-25
Last modified:2020-02-26
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystallographic analysis of murine p24 gamma 2 Golgi dynamics domain
Proteins, 85, 2017
3WOG
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BU of 3wog by Molmil
Crystal structure plant lectin in complex with ligand
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose, CALCIUM ION, ...
Authors:Nagae, M, Yamaguchi, Y.
Deposit date:2013-12-26
Release date:2014-04-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Phytohemagglutinin from Phaseolus vulgaris (PHA-E) displays a novel glycan recognition mode using a common legume lectin fold
Glycobiology, 24, 2014
3WCR
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BU of 3wcr by Molmil
Crystal structure of plant lectin (ligand-free form)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, BROMIDE ION, Erythroagglutinin
Authors:Nagae, M, Yamaguchi, Y.
Deposit date:2013-05-31
Release date:2014-04-09
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Phytohemagglutinin from Phaseolus vulgaris (PHA-E) displays a novel glycan recognition mode using a common legume lectin fold
Glycobiology, 24, 2014
3WCS
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BU of 3wcs by Molmil
Crystal structure of plant lectin (ligand-bound form)
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose, ...
Authors:Nagae, M, Yamaguchi, Y.
Deposit date:2013-05-31
Release date:2014-04-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Phytohemagglutinin from Phaseolus vulgaris (PHA-E) displays a novel glycan recognition mode using a common legume lectin fold
Glycobiology, 24, 2014
5AV7
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BU of 5av7 by Molmil
Crystal structure of Calsepa lectin in complex with bisected glycan
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)][2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)]methyl alpha-D-mannopyranoside, Lectin
Authors:Nagae, M, Yamaguchi, Y.
Deposit date:2015-06-12
Release date:2016-04-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Atomic visualization of a flipped-back conformation of bisected glycans bound to specific lectins
Sci Rep, 6, 2016
5AVA
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BU of 5ava by Molmil
Crystal structure of PHA-E lectin in complex with bisected glycan
Descriptor: CALCIUM ION, Erythroagglutinin, MANGANESE (II) ION, ...
Authors:Nagae, M, Yamaguchi, Y.
Deposit date:2015-06-12
Release date:2016-04-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3 Å)
Cite:Atomic visualization of a flipped-back conformation of bisected glycans bound to specific lectins
Sci Rep, 6, 2016
5AZX
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BU of 5azx by Molmil
Crystal structure of p24delta1 GOLD domain (native 1)
Descriptor: SULFATE ION, Transmembrane emp24 domain-containing protein 10
Authors:Nagae, M, Yamaguchi, Y.
Deposit date:2015-10-23
Release date:2016-09-14
Last modified:2020-02-26
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:3D Structure and Interaction of p24 beta and p24 delta Golgi Dynamics Domains: Implication for p24 Complex Formation and Cargo Transport
J.Mol.Biol., 428, 2016
5AZW
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BU of 5azw by Molmil
Crystal structure of p24beta1 GOLD domain
Descriptor: 1,2-ETHANEDIOL, Transmembrane emp24 domain-containing protein 2
Authors:Nagae, M, Yamaguchi, Y.
Deposit date:2015-10-23
Release date:2016-09-14
Last modified:2020-02-26
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:3D Structure and Interaction of p24 beta and p24 delta Golgi Dynamics Domains: Implication for p24 Complex Formation and Cargo Transport
J.Mol.Biol., 428, 2016
5AZY
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BU of 5azy by Molmil
Crystal structure of p24delta1 GOLD domain (Native 2)
Descriptor: 1,2-ETHANEDIOL, SULFATE ION, Transmembrane emp24 domain-containing protein 10
Authors:Nagae, M, Yamaguchi, Y.
Deposit date:2015-10-23
Release date:2016-09-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:3D Structure and Interaction of p24 beta and p24 delta Golgi Dynamics Domains: Implication for p24 Complex Formation and Cargo Transport
J.Mol.Biol., 428, 2016

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PDB entries from 2024-09-18

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