Author results

2CYM
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EFFECTS OF AMINO ACID SUBSTITUTION ON THREE-DIMENSIONAL STRUCTURE: AN X-RAY ANALYSIS OF CYTOCHROME C3 FROM DESULFOVIBRIO VULGARIS HILDENBOROUGH AT 2 ANGSTROMS RESOLUTION
Descriptor:CYTOCHROME C3, PROTOPORPHYRIN IX CONTAINING FE
Authors:Morimoto, Y., Tani, T., Okumura, H., Higuchi, Y., Yasuoka, N.
Deposit date:1993-09-29
Release date:1994-04-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Effects of amino acid substitution on three-dimensional structure: an X-ray analysis of cytochrome c3 from Desulfovibrio vulgaris Hildenborough at 2 A resolution.
J.Biochem.(Tokyo), 110, 1991
3AB5
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CRYSTAL STRUCTURE OF THE 2FE 2S FERREDOXIN FROM CYANIDIOSCHYZON MEROLAE
Descriptor:Ferredoxin, FE2/S2 (INORGANIC) CLUSTER
Authors:Morimoto, Y., Imai, T., Ozawa, Y.
Deposit date:2009-12-01
Release date:2010-11-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:Crystal structure of the 2Fe 2S Ferredoxin from Cyanidioschyzon merolae at 1.18A resolution.
To be Published
5B5J
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HEN EGG WHITE LYSOZYME WITH BORON TRACEDRUG UTX-97
Descriptor:Lysozyme C, 2-cyano-3-((6-(((2-((2-cyanoethyl)(borocaptate-10B)sulfonio)acetyl)carbamoyl)oxy)hexyl)amino)quinoxaline 1,4-dioxide, SODIUM ION
Authors:Morimoto, Y.
Deposit date:2016-05-11
Release date:2017-06-28
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:Structural Insight Into Protein Binding of Boron Tracedrug UTX-97 Revealed by the Co-Crystal Structure With Lysozyme at 1.26 angstrom Resolution.
J Pharm Sci, 105, 2016
2DU2
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CRYSTAL STRUCTURE ANALYSIS OF THE L-LACTATE OXIDASE
Descriptor:Lactate oxidase, FLAVIN MONONUCLEOTIDE
Authors:Morimoto, Y.
Deposit date:2006-07-19
Release date:2006-12-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The crystal structure of L-lactate oxidase from Aerococcus viridans at 2.1A resolution reveals the mechanism of strict substrate recognition
Biochem.Biophys.Res.Commun., 350, 2006
2E77
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CRYSTAL STRUCTURE OF L-LACTATE OXIDASE WITH PYRUVATE COMPLEX
Descriptor:Lactate oxidase, FLAVIN MONONUCLEOTIDE, PYRUVIC ACID
Authors:Morimoto, Y.
Deposit date:2007-01-06
Release date:2007-11-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystallographic study on the interaction of L-lactate oxidase with pyruvate at 1.9 Angstrom resolution.
Biochem.Biophys.Res.Commun., 358, 2007
5EVY
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SALICYLATE HYDROXYLASE SUBSTRATE COMPLEX
Descriptor:Salicylate hydroxylase, FLAVIN-ADENINE DINUCLEOTIDE, 2-HYDROXYBENZOIC ACID
Authors:Morimoto, Y., Uemura, T.
Deposit date:2015-11-20
Release date:2015-12-16
Last modified:2016-01-13
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:The catalytic mechanism of decarboxylative hydroxylation of salicylate hydroxylase revealed by crystal structure analysis at 2.5 angstrom resolution
Biochem.Biophys.Res.Commun., 469, 2016
2DXM
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NEUTRON STRUCTURE ANALYSIS OF DEOXY HUMAN HEMOGLOBIN
Descriptor:Hemoglobin subunit alpha, Hemoglobin subunit beta, PROTOPORPHYRIN IX CONTAINING FE
Authors:Morimoto, Y.
Deposit date:2006-08-28
Release date:2007-12-04
Last modified:2018-12-05
Method:NEUTRON DIFFRACTION (2.1 Å)
Cite:Protonation states of buried histidine residues in human deoxyhemoglobin revealed by neutron crystallography.
J.Am.Chem.Soc., 129, 2007
1EEX
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CRYSTAL STRUCTURE OF THE DIOL DEHYDRATASE-ADENINYLPENTYLCOBALAMIN COMPLEX FROM KLEBSIELLA OXYTOCA
Descriptor:PROPANEDIOL DEHYDRATASE, POTASSIUM ION, CO-(ADENIN-9-YL-PENTYL)-COBALAMIN, ...
Authors:Shibata, N., Masuda, J., Toraya, T., Morimoto, Y., Yasuoka, N.
Deposit date:2000-02-04
Release date:2001-02-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:How a protein generates a catalytic radical from coenzyme B(12): X-ray structure of a diol-dehydratase-adeninylpentylcobalamin complex.
Structure Fold.Des., 8, 2000
1EGM
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CRYSTAL STRUCTURE OF DIOL DEHYDRATASE-CYANOCOBALAMIN COMPLEX AT 100K.
Descriptor:PROPANEDIOL DEHYDRATASE, POTASSIUM ION, CO-CYANOCOBALAMIN, ...
Authors:Masuda, J., Shibata, N., Toraya, T., Morimoto, Y., Yasuoka, N.
Deposit date:2000-02-15
Release date:2000-09-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:How a protein generates a catalytic radical from coenzyme B(12): X-ray structure of a diol-dehydratase-adeninylpentylcobalamin complex.
Structure Fold.Des., 8, 2000
1EGV
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CRYSTAL STRUCTURE OF THE DIOL DEHYDRATASE-ADENINYLPENTYLCOBALAMIN COMPLEX FROM KLEBSELLA OXYTOCA UNDER THE ILLUMINATED CONDITION.
Descriptor:PROPANEDIOL DEHYDRATASE, POTASSIUM ION, CO-(ADENIN-9-YL-PENTYL)-COBALAMIN, ...
Authors:Masuda, J., Shibata, N., Toraya, T., Morimoto, Y., Yasuoka, N.
Deposit date:2000-02-17
Release date:2001-02-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:How a protein generates a catalytic radical from coenzyme B(12): X-ray structure of a diol-dehydratase-adeninylpentylcobalamin complex.
Structure Fold.Des., 8, 2000
2CVC
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CRYSTAL STRUCTURE OF HIGH-MOLECULAR WEIGHT CYTOCHROME C FROM DESULFOVIBRIO VULGARIS (HILDENBOROUGH)
Descriptor:High-molecular-weight cytochrome c precursor, PROTOPORPHYRIN IX CONTAINING FE
Authors:Suto, K., Sato, M., Shibata, N., Kitamura, M., Morimoto, Y., Takayama, Y., Ozawa, K., Akutsu, H., Higuchi, Y., Yasuoka, N.
Deposit date:2005-06-02
Release date:2006-06-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of High-Molecular Weight Cytochrome c
To be Published
1IRU
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CRYSTAL STRUCTURE OF THE MAMMALIAN 20S PROTEASOME AT 2.75 A RESOLUTION
Descriptor:20S proteasome, MAGNESIUM ION
Authors:Unno, M., Mizushima, T., Morimoto, Y., Tomisugi, Y., Tanaka, K., Yasuoka, N., Tsukihara, T.
Deposit date:2001-10-24
Release date:2002-05-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:The structure of the mammalian 20S proteasome at 2.75 A resolution.
Structure, 10, 2002
2E84
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CRYSTAL STRUCTURE OF HIGH-MOLECULAR WEIGHT CYTOCHROME C FROM DESULFOVIBRIO VULGARIS (MIYAZAKI F) IN THE PRESENCE OF ZINC ION
Descriptor:High-molecular-weight cytochrome c, ZINC ION, SODIUM ION, ...
Authors:Shibata, N., Suto, K., Sato, M., Morimoto, Y., Kitamura, M., Higuchi, Y.
Deposit date:2007-01-17
Release date:2008-01-15
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of High-Molecular Weight Cytochrome c from Desulfovibrio vulgaris (Miyazaki F)
To be Published
3WCQ
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CRYSTAL STRUCTURE ANALYSIS OF CYANIDIOSCHYZON MELORAE FERREDOXIN D58N MUTANT
Descriptor:Ferredoxin, FE2/S2 (INORGANIC) CLUSTER
Authors:Ueno, Y., Matsumoto, T., Yamano, A., Imai, T., Morimoto, Y.
Deposit date:2013-05-31
Release date:2013-08-07
Method:X-RAY DIFFRACTION (0.97 Å)
Cite:Increasing the electron-transfer ability of Cyanidioschyzon merolae ferredoxin by a one-point mutation - A high resolution and Fe-SAD phasing crystal structure analysis of the Asp58Asn mutant
Biochem.Biophys.Res.Commun., 436, 2013
1DIO
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DIOL DEHYDRATASE-CYANOCOBALAMIN COMPLEX FROM KLEBSIELLA OXYTOCA
Descriptor:PROTEIN (DIOL DEHYDRATASE), POTASSIUM ION, S-1,2-PROPANEDIOL, ...
Authors:Shibata, N., Masuda, J., Tobimatsu, T., Toraya, T., Suto, K., Morimoto, Y., Yasuoka, N.
Deposit date:1999-01-27
Release date:2000-01-30
Last modified:2012-10-24
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A new mode of B12 binding and the direct participation of a potassium ion in enzyme catalysis: X-ray structure of diol dehydratase.
Structure Fold.Des., 7, 1999
1EQQ
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SINGLE STRANDED DNA BINDING PROTEIN AND SSDNA COMPLEX
Descriptor:5'-R(*(5MU)P*(5MU)P*(5MU))-3', SINGLE STRANDED DNA BINDING PROTEIN
Authors:Matsumoto, T., Morimoto, Y., Shibata, N., Yasuoka, N., Shimamoto, N.
Deposit date:2000-04-06
Release date:2003-09-23
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Roles of functional loops and the C-terminal segment of a single-stranded DNA binding protein elucidated by X-Ray structure analysis
J.Biochem.(Tokyo), 127, 2000
1IWB
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CRYSTAL STRUCTURE OF DIOL DEHYDRATASE
Descriptor:DIOL DEHYDRATASE alpha chain, DIOL DEHYDRATASE beta chain, DIOL DEHYDRATASE gamma chain, ...
Authors:Shibata, N., Masuda, J., Morimoto, Y., Yasuoka, N., Toraya, T.
Deposit date:2002-05-01
Release date:2003-05-01
Last modified:2012-10-24
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Substrate-induced conformational change of a coenzyme B12-dependent enzyme: crystal structure of the substrate-free form of diol dehydratase
Biochemistry, 41, 2002
1QVC
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CRYSTAL STRUCTURE ANALYSIS OF SINGLE STRANDED DNA BINDING PROTEIN (SSB) FROM E.COLI
Descriptor:SINGLE STRANDED DNA BINDING PROTEIN MONOMER
Authors:Matsumoto, T., Morimoto, Y., Shibata, N., Shimamoto, N., Tsukihara, T., Yasuoka, N.
Deposit date:1999-07-07
Release date:2000-06-05
Last modified:2012-07-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Roles of functional loops and the C-terminal segment of a single-stranded DNA binding protein elucidated by X-Ray structure analysis.
J.Biochem.(Tokyo), 127, 2000
1V7Y
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CRYSTAL STRUCTURE OF TRYPTOPHAN SYNTHASE ALPHA-SUBUNIT FROM ESCHERICHIA COLI AT ROOM TEMPERATURE
Descriptor:Tryptophan synthase alpha chain, SULFATE ION
Authors:Nishio, K., Morimoto, Y., Ishizuka, M., Ogasahara, K., Yutani, K., Tsukihara, T., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-12-25
Release date:2005-02-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Conformational Changes in the alpha-Subunit Coupled to Binding of the beta(2)-Subunit of Tryptophan Synthase from Escherichia coli: Crystal Structure of the Tryptophan Synthase alpha-Subunit Alon
Biochemistry, 44, 2005
1WQ5
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CRYSTAL STRUCTURE OF TRYPTOPHAN SYNTHASE ALPHA-SUBUNIT FROM ESCHERICHIA COLI
Descriptor:Tryptophan synthase alpha chain, SULFATE ION, GLYCEROL
Authors:Nishio, K., Morimoto, Y., Ishizuka, M., Ogasahara, K., Yutani, K., Tsukihara, T., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-09-22
Release date:2005-02-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Conformational Changes in the alpha-Subunit Coupled to Binding of the beta(2)-Subunit of Tryptophan Synthase from Escherichia coli: Crystal Structure of the Tryptophan Synthase alpha-Subunit Alon
Biochemistry, 44, 2005
1X0P
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STRUCTURE OF A CYANOBACTERIAL BLUF PROTEIN, TLL0078
Descriptor:hypothetical protein Tll0078, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Kita, A., Okajima, K., Morimoto, Y., Ikeuchi, M., Miki, K.
Deposit date:2005-03-27
Release date:2005-06-07
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of a Cyanobacterial BLUF Protein, Tll0078, Containing a Novel FAD-binding Blue Light Sensor Domain
J.Mol.Biol., 349, 2005
2DH5
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CRYSTAL STRUCTURE OF E. COLI HOLO-TRPB
Descriptor:tryptophan synthase beta subunit, SULFATE ION, PYRIDOXAL-5'-PHOSPHATE, ...
Authors:Nishio, K., Morimoto, Y., Ogasahara, K., Yutani, K., Tsukihara, T., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-03-23
Release date:2007-04-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Large conformational changes in the Escherichia coli tryptophan synthase beta(2) subunit upon pyridoxal 5'-phosphate binding
Febs J., 277, 2010
2DH6
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CRYSTAL STRUCTURE OF E. COLI APO-TRPB
Descriptor:tryptophan synthase beta subunit, SULFATE ION
Authors:Nishio, K., Morimoto, Y., Ogasahara, K., Yasuoka, N., Yutani, K., Tsukihara, T., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-03-23
Release date:2007-04-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Large conformational changes in the Escherichia coli tryptophan synthase beta(2) subunit upon pyridoxal 5'-phosphate binding
Febs J., 277, 2010
3KMF
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ROOM TEMPERATURE TIME-OF-FLIGHT NEUTRON DIFFRACTION STUDY OF DEOXY HUMAN NORMAL ADULT HEMOGLOBIN
Descriptor:Hemoglobin subunit alpha, Hemoglobin subunit beta, PROTOPORPHYRIN IX CONTAINING FE
Authors:Kovalevsky, A.Y., Morimoto, Y., Chatake, T.
Deposit date:2009-11-10
Release date:2010-04-21
Last modified:2018-06-13
Method:NEUTRON DIFFRACTION (2 Å)
Cite:Direct Determination of Protonation States of Histidine Residues in a 2 A Neutron Structure of Deoxy-Human Normal Adult Hemoglobin and Implications for the Bohr Effect.
J.Mol.Biol., 398, 2010
3WMP
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CRYSTAL STRUCTURE OF SLL-2
Descriptor:Galactose-binding lectin, N-ACETYL-D-GLUCOSAMINE, (4S)-2-METHYL-2,4-PENTANEDIOL, ...
Authors:Kita, A., Jimbo, M., Sakai, R., Morimoto, Y., Miki, K.
Deposit date:2013-11-22
Release date:2015-01-14
Last modified:2015-09-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of a symbiosis-related lectin from octocoral.
Glycobiology, 25, 2015
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