Author results

6J3E
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CRYSTAL STRUCTURE OF AN APO FORM OF THE GLUTATHIONE S-TRANSFERASE, CSGST63524, OF CERIPORIOPSIS SUBVERMISPORA
Descriptor:glutathione S-transferase, 1,2-ETHANEDIOL
Authors:Osman, W.H.W., Mikami, B., Saka, N., Kondo, K., Nagata, T., Katahira, M.
Deposit date:2019-01-04
Release date:2019-02-27
Method:X-RAY DIFFRACTION (2.455 Å)
Cite:Structure of a serine-type glutathione S-transferase of Ceriporiopsis subvermispora and identification of the enzymatically important non-canonical residues by functional mutagenesis.
Biochem. Biophys. Res. Commun., 510, 2019
6J3F
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CRYSTAL STRUCTURE OF THE GLUTATHIONE S-TRANSFERASE, CSGST63524, OF CERIPORIOPSIS SUBVERMISPORA IN COMPLEX WITH GLUTATHIONE
Descriptor:glutathione S-transferase, GLUTATHIONE, 1,2-ETHANEDIOL
Authors:Osman, W.H.W., Mikami, B., Saka, N., Kondo, K., Nagata, T., Katahira, M.
Deposit date:2019-01-04
Release date:2019-02-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of a serine-type glutathione S-transferase of Ceriporiopsis subvermispora and identification of the enzymatically important non-canonical residues by functional mutagenesis.
Biochem. Biophys. Res. Commun., 510, 2019
5Z6B
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CRYSTAL STRUCTURE OF SUGAR-BINDING PROTEIN YESO IN COMPLEX WITH RHAMNOGALACTURONAN TRISACCHARIDE
Descriptor:Putative ABC transporter substrate-binding protein YesO, 2,6-ANHYDRO-3-DEOXY-D-ERYTHRO-HEX-2-ENONIC ACID, ALPHA-L-RHAMNOSE, ...
Authors:Sugiura, H., Oiki, S., Mikami, B., Murata, K., Hashimoto, W.
Deposit date:2018-01-22
Release date:2019-01-23
Method:X-RAY DIFFRACTION (1.582 Å)
Cite:Crystal structure of sugar-binding protein YesO in complex with rhamnogalacturonan trisaccharide
To Be Published
5Z6C
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CRYSTAL STRUCTURE OF BACILLUS SUBTILIS SUGAR-BINDING PROTEIN YESO INVOLVED IN IMPORT OF RHAMNOGALACTURONAN
Descriptor:Putative ABC transporter substrate-binding protein YesO
Authors:Sugiura, H., Oiki, S., Mikami, B., Murata, K., Hashimoto, W.
Deposit date:2018-01-22
Release date:2019-01-23
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Crystal structure of Bacillus subtilis sugar-binding protein YesO involved in import of rhamnogalacturonan
To Be Published
5YN2
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CRYSTAL STRUCTURE OF APO PULLULANASE FROM KLEBSIELLA PNEUMONIAE IN SPACE GROUP P43212
Descriptor:PulA protein, CALCIUM ION, MAGNESIUM ION
Authors:Saka, N., Iwamoto, H., Takahashi, N., Mizutani, K., Mikami, B.
Deposit date:2017-10-24
Release date:2018-10-24
Last modified:2018-11-14
Method:X-RAY DIFFRACTION (2.301 Å)
Cite:Elucidation of the mechanism of interaction between Klebsiella pneumoniae pullulanase and cyclodextrin
Acta Crystallogr D Struct Biol, 74, 2018
5YN7
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CRYSTAL STRUCTURE OF PULLULANASE FROM KLEBSIELLA PNEUMONIAE COMPLEX AT 0.1 MM BETA-CYCLODEXTRIN
Descriptor:PulA protein, CALCIUM ION, 1,2-ETHANEDIOL, ...
Authors:Saka, N., Iwamoto, H., Takahashi, N., Mizutani, K., Mikami, B.
Deposit date:2017-10-24
Release date:2018-10-24
Last modified:2018-11-14
Method:X-RAY DIFFRACTION (2.586 Å)
Cite:Elucidation of the mechanism of interaction between Klebsiella pneumoniae pullulanase and cyclodextrin
Acta Crystallogr D Struct Biol, 74, 2018
5YNA
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CRYSTAL STRUCTURE OF PULLULANASE FROM KLEBSIELLA PNEUMONIAE COMPLEX AT 1 MM ALPHA-CYCLODEXTRIN
Descriptor:PulA protein, CALCIUM ION, GLYCEROL, ...
Authors:Saka, N., Iwamoto, H., Takahashi, N., Mizutani, K., Mikami, B.
Deposit date:2017-10-24
Release date:2018-10-24
Last modified:2018-11-14
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Elucidation of the mechanism of interaction between Klebsiella pneumoniae pullulanase and cyclodextrin
Acta Crystallogr D Struct Biol, 74, 2018
5YNC
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CRYSTAL STRUCTURE OF PULLULANASE FROM KLEBSIELLA PNEUMONIAE COMPLEX AT 1 MM BETA-CYCLODEXTRIN
Descriptor:PulA protein, CALCIUM ION, ACETATE ION, ...
Authors:Saka, N., Iwamoto, H., Takahashi, N., Mizutani, K., Mikami, B.
Deposit date:2017-10-24
Release date:2018-10-24
Last modified:2018-11-14
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Elucidation of the mechanism of interaction between Klebsiella pneumoniae pullulanase and cyclodextrin
Acta Crystallogr D Struct Biol, 74, 2018
5YND
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CRYSTAL STRUCTURE OF PULLULANASE FROM KLEBSIELLA PNEUMONIAE COMPLEX AT 1 MM GAMMA-CYCLODEXTRIN
Descriptor:DUF3372 domain-containing protein, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Saka, N., Iwamoto, H., Takahashi, N., Mizutani, K., Mikami, B.
Deposit date:2017-10-24
Release date:2018-10-24
Last modified:2018-11-14
Method:X-RAY DIFFRACTION (2.227 Å)
Cite:Elucidation of the mechanism of interaction between Klebsiella pneumoniae pullulanase and cyclodextrin
Acta Crystallogr D Struct Biol, 74, 2018
5YNE
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CRYSTAL STRUCTURE OF PULLULANASE FROM KLEBSIELLA PNEUMONIAE COMPLEX AT 10 MM ALPHA-CYCLODEXTRIN
Descriptor:PulA protein, CALCIUM ION, GLYCEROL, ...
Authors:Saka, N., Iwamoto, H., Takahashi, N., Mizutani, K., Mikami, B.
Deposit date:2017-10-24
Release date:2018-10-24
Last modified:2018-11-14
Method:X-RAY DIFFRACTION (2.199 Å)
Cite:Elucidation of the mechanism of interaction between Klebsiella pneumoniae pullulanase and cyclodextrin
Acta Crystallogr D Struct Biol, 74, 2018
5YNH
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CRYSTAL STRUCTURE OF PULLULANASE FROM KLEBSIELLA PNEUMONIAE COMPLEX AT 10 MM GAMMA-CYCLODEXTRIN
Descriptor:PulA protein, ALPHA-D-GLUCOSE, CALCIUM ION, ...
Authors:Saka, N., Iwamoto, H., Takahashi, N., Mizutani, K., Mikami, B.
Deposit date:2017-10-24
Release date:2018-10-24
Last modified:2018-11-14
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Elucidation of the mechanism of interaction between Klebsiella pneumoniae pullulanase and cyclodextrin
Acta Crystallogr D Struct Biol, 74, 2018
6A4U
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THE FIRST CRYSTAL STRUCTURE OF CRUSTACEAN FERRITIN THAT IS A HYBRID TYPE OF H AND L FERRITIN
Descriptor:Ferritin, 1,2-ETHANEDIOL, SULFATE ION, ...
Authors:Masuda, T., Mikami, B., Zang, J., Zhao, G.
Deposit date:2018-06-21
Release date:2018-08-22
Last modified:2018-11-07
Method:X-RAY DIFFRACTION (1.16 Å)
Cite:The first crystal structure of crustacean ferritin that is a hybrid type of H and L ferritin
Protein Sci., 27, 2018
5XBU
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CRYSTAL STRUCTURE OF GH45 ENDOGLUCANASE EG27II IN APO-FORM
Descriptor:Endo-beta-1,4-glucanase
Authors:Nomura, T., Mizutani, K., Iwase, H., Takahashi, N., Mikami, B.
Deposit date:2017-03-21
Release date:2018-03-28
Method:X-RAY DIFFRACTION (1 Å)
Cite:To be published
To Be Published
5XBX
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CRYSTAL STRUCTURE OF GH45 ENDOGLUCANASE EG27II IN COMPLEX WITH CELLOBIOSE
Descriptor:Endo-beta-1,4-glucanase, CELLOBIOSE
Authors:Nomura, T., Mizutani, K., Iwase, H., Takahashi, N., Mikami, B.
Deposit date:2017-03-21
Release date:2018-03-28
Method:X-RAY DIFFRACTION (1.04 Å)
Cite:To be published
To Be Published
5XC4
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CRYSTAL STRUCTURE OF GH45 ENDOGLUCANASE EG27II AT PH4.0, IN COMPLEX WITH CELLOBIOSE
Descriptor:Endo-beta-1,4-glucanase, CELLOBIOSE
Authors:Nomura, T., Mizutani, K., Iwase, H., Takahashi, N., Mikami, B.
Deposit date:2017-03-22
Release date:2018-03-28
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:To be published
To Be Published
5XC8
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CRYSTAL STRUCTURE OF GH45 ENDOGLUCANASE EG27II AT PH5.5, IN COMPLEX WITH CELLOBIOSE
Descriptor:Endo-beta-1,4-glucanase, CELLOBIOSE
Authors:Nomura, T., Mizutani, K., Iwase, H., Takahashi, N., Mikami, B.
Deposit date:2017-03-22
Release date:2018-03-28
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:To be published
To Be Published
5XC9
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CRYSTAL STRUCTURE OF GH45 ENDOGLUCANASE EG27II AT PH8.0, IN COMPLEX WITH CELLOBIOSE
Descriptor:Endo-beta-1,4-glucanase, CELLOBIOSE
Authors:Nomura, T., Mizutani, K., Iwase, H., Takahashi, N., Mikami, B.
Deposit date:2017-03-22
Release date:2018-03-28
Method:X-RAY DIFFRACTION (1.28 Å)
Cite:To be published
To Be Published
5XCA
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CRYSTAL STRUCTURE OF GH45 ENDOGLUCANASE EG27II D137A MUTANT IN COMPLEX WITH CELLOBIOSE
Descriptor:Endo-beta-1,4-glucanase, CELLOBIOSE
Authors:Nomura, T., Mizutani, K., Iwase, H., Takahashi, N., Mikami, B.
Deposit date:2017-03-22
Release date:2018-03-28
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:To be published
To Be Published
5YYP
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STRUCTURE K137A THAUMATIN
Descriptor:Preprothaumatin I, L(+)-TARTARIC ACID, GLYCEROL
Authors:Masuda, T., Kigo, S., Mitsumoto, M., Ohta, K., Suzuki, M., Mikami, B., Kitabatake, N., Tani, F.
Deposit date:2017-12-10
Release date:2018-03-21
Method:X-RAY DIFFRACTION (1.01 Å)
Cite:Positive Charges on the Surface of Thaumatin Are Crucial for the Multi-Point Interaction with the Sweet Receptor.
Front Mol Biosci, 5, 2018
5YYQ
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STRUCTURE K78A THAUMATIN
Descriptor:Preprothaumatin I, L(+)-TARTARIC ACID, GLYCEROL
Authors:Masuda, T., Kigo, S., Mitsumoto, M., Ohta, K., Suzuki, M., Mikami, B., Kitabatake, N., Tani, F.
Deposit date:2017-12-10
Release date:2018-03-21
Method:X-RAY DIFFRACTION (1.07 Å)
Cite:Positive Charges on the Surface of Thaumatin Are Crucial for the Multi-Point Interaction with the Sweet Receptor.
Front Mol Biosci, 5, 2018
5YYR
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STRUCTURE K106A THAUMATIN
Descriptor:Preprothaumatin I, L(+)-TARTARIC ACID, GLYCEROL
Authors:Masuda, T., Kigo, S., Ohta, K., Mitsumoto, M., Mikami, B., Suzuki, M., Kitabatake, N., Tani, F.
Deposit date:2017-12-10
Release date:2018-03-21
Method:X-RAY DIFFRACTION (1.07 Å)
Cite:Positive Charges on the Surface of Thaumatin Are Crucial for the Multi-Point Interaction with the Sweet Receptor.
Front Mol Biosci, 5, 2018
5X9L
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RECOMBINANT THAUMATIN I AT 0.9 ANGSTROM
Descriptor:Thaumatin I, L(+)-TARTARIC ACID, GLYCEROL
Authors:Masuda, T., Okubo, K., Sugahara, M., Suzuki, M., Mikami, B.
Deposit date:2017-03-08
Release date:2018-03-14
Method:X-RAY DIFFRACTION (0.9 Å)
Cite:Recombinant thaumatin I at 0.9 Angstrom
To Be Published
5X9M
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STRUCTURE OF HYPER-SWEET THAUMATIN (D21N)
Descriptor:Thaumatin I, L(+)-TARTARIC ACID, GLYCEROL
Authors:Masuda, T., Okubo, K., Sugahara, M., Suzuki, M., Mikami, B.
Deposit date:2017-03-08
Release date:2018-03-14
Method:X-RAY DIFFRACTION (0.93 Å)
Cite:Structure of hyper-sweet thaumatin (D21N)
To Be Published
5Y6Q
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CRYSTAL STRUCTURE OF AN ALDEHYDE OXIDASE FROM METHYLOBACILLUS SP. KY4400
Descriptor:Aldehyde oxidase small subunit, Aldehyde oxidase medium subunit, Aldehyde oxidase large subunit, ...
Authors:Mikami, B., Uchida, H.
Deposit date:2017-08-13
Release date:2018-01-24
Last modified:2018-04-11
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of an aldehyde oxidase from Methylobacillus sp. KY4400.
J. Biochem., 163, 2018
5XS8
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CRYSTAL STRUCTURE OF SOLUTE-BINDING PROTEIN COMPLEXED WITH UNSATURATED CHONDROITIN DISACCHARIDE WITH TWO SULFATE GROUPS AT C-4 AND C-6 POSITIONS OF GALNAC
Descriptor:Extracellular solute-binding protein family 1, CALCIUM ION, 4,5-DEHYDRO-D-GLUCURONIC ACID, ...
Authors:Oiki, S., Kamochi, R., Mikami, B., Murata, K., Hashimoto, W.
Deposit date:2017-06-12
Release date:2018-01-17
Method:X-RAY DIFFRACTION (1.952 Å)
Cite:Alternative substrate-bound conformation of bacterial solute-binding protein involved in the import of mammalian host glycosaminoglycans.
Sci Rep, 7, 2017