Author results

1ULI
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BIPHENYL DIOXYGENASE (BPHA1A2) DERIVED FROM RHODOCOCCUS SP. STRAIN RHA1
Descriptor:biphenyl dioxygenase large subunit, biphenyl dioxygenase small subunit, FE (II) ION, ...
Authors:Furusawa, Y., Nagarajan, V., Masai, E., Tanokura, M., Fukuda, M., Senda, T.
Deposit date:2003-09-12
Release date:2004-09-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of the Terminal Oxygenase Component of Biphenyl Dioxygenase Derived from Rhodococcus sp. Strain RHA1
J.Mol.Biol., 342, 2004
1ULJ
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BIPHENYL DIOXYGENASE (BPHA1A2) IN COMPLEX WITH THE SUBSTRATE
Descriptor:biphenyl dioxygenase large subunit, biphenyl dioxygenase small subunit, FE (II) ION, ...
Authors:Furusawa, Y., Nagarajan, V., Masai, E., Tanokura, M., Fukuda, M., Senda, T.
Deposit date:2003-09-12
Release date:2004-09-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure of the Terminal Oxygenase Component of Biphenyl Dioxygenase Derived from Rhodococcus sp. Strain RHA1
J.Mol.Biol., 342, 2004
4G10
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LIGG FROM SPHINGOBIUM SP. SYK-6 IS RELATED TO THE GLUTATHIONE TRANSFERASE OMEGA CLASS
Descriptor:Glutathione S-transferase homolog, GLUTATHIONE, ACETATE ION, ...
Authors:Meux, E., Prosper, P., Masai, E., Mulliert Carlin, G., Dumarcay, S., Morel, M., Didierjean, C., Gelhaye, E., Favier, F.
Deposit date:2012-07-10
Release date:2012-10-03
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Sphingobium sp. SYK-6 LigG involved in lignin degradation is structurally and biochemically related to the glutathione transferase omega class.
Febs Lett., 586, 2012
1D7Y
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CRYSTAL STRUCTURE OF NADH-DEPENDENT FERREDOXIN REDUCTASE, BPHA4
Descriptor:FERREDOXIN REDUCTASE, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Senda, T., Yamada, T., Sakurai, N., Kubota, M., Nishizaki, T., Masai, E., Fukuda, M., Mitsui, Y.
Deposit date:1999-10-21
Release date:2000-12-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of NADH-dependent ferredoxin reductase component in biphenyl dioxygenase.
J.Mol.Biol., 304, 2000
1F3P
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FERREDOXIN REDUCTASE (BPHA4)-NADH COMPLEX
Descriptor:FERREDOXIN REDUCTASE, FLAVIN-ADENINE DINUCLEOTIDE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Senda, T., Yamada, T., Sakurai, N., Kubota, M., Nishizaki, T., Masai, E., Fukuda, M., Mitsuidagger, Y.
Deposit date:2000-06-06
Release date:2001-06-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of NADH-dependent ferredoxin reductase component in biphenyl dioxygenase.
J.Mol.Biol., 304, 2000
1KW3
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CRYSTAL STRUCTURE OF 2,3-DIHYDROXYBIPHENYAL DIOXYGENASE (BPHC) AT 1.45 A RESOLUTION
Descriptor:2,3-Dihydroxybiphenyl dioxygenase, FE (II) ION, (4S)-2-METHYL-2,4-PENTANEDIOL
Authors:Sato, N., Uragami, Y., Nishizaki, T., Takahashi, Y., Sazaki, G., Sugimoto, K., Nonaka, T., Masai, E., Fukuda, M., Senda, T.
Deposit date:2002-01-28
Release date:2003-01-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase
J.Mol.Biol., 321, 2002
1KW6
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CRYSTAL STRUCTURE OF 2,3-DIHYDROXYBIPHENYL DIOXYGENASE (BPHC) IN COMPLEX WITH 2,3-DIHYDROXYBIPHENYL AT 1.45 A RESOLUTION
Descriptor:2,3-Dihydroxybiphenyl dioxygenase, FE (II) ION, BIPHENYL-2,3-DIOL, ...
Authors:Sato, N., Uragami, Y., Nishizaki, T., Takahashi, Y., Sazaki, G., Sugimoto, K., Nonaka, T., Masai, E., Fukuda, M., Senda, T.
Deposit date:2002-01-28
Release date:2003-01-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase
J.Mol.Biol., 321, 2002
1KW8
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CRYSTAL STRUCTURE OF BPHC-2,3-DIHYDROXYBIPHENYL-NO COMPLEX
Descriptor:2,3-Dihydroxybiphenyl dioxygenase, FE (II) ION, NITRIC OXIDE, ...
Authors:Sato, N., Uragami, Y., Nishizaki, T., Takahashi, Y., Sazaki, G., Sugimoto, K., Nonaka, T., Masai, E., Fukuda, M., Senda, T.
Deposit date:2002-01-29
Release date:2003-01-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase
J.Mol.Biol., 321, 2002
1KW9
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CRYSTAL STRUCTURE OF 2,3-DIHYDROXYBIPHENYL DIOXYGENASE (BPHC) IN COMPLEX WITH 2,3-DIHYDROXYBIPHENYL AT 2.0A RESOLUTION
Descriptor:2,3-Dihydroxybiphenyl dioxygenase, FE (II) ION, BIPHENYL-2,3-DIOL
Authors:Sato, N., Uragami, Y., Nishizaki, T., Takahashi, Y., Sazaki, G., Sugimoto, K., Nonaka, T., Masai, E., Fukuda, M., Senda, T.
Deposit date:2002-01-29
Release date:2003-01-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase
J.Mol.Biol., 321, 2002
1KWB
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CRYSTAL STRUCTURE OF THE HIS145ALA MUTANT OF 2,3-DIHYDROXYBIPHENY DIOXYGENASE (BPHC)
Descriptor:2,3-Dihydroxybiphenyl dioxygenase
Authors:Sato, N., Uragami, Y., Nishizaki, T., Takahashi, Y., Sazaki, G., Sugimoto, K., Nonaka, T., Masai, E., Fukuda, M., Senda, T.
Deposit date:2002-01-29
Release date:2003-01-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase
J.Mol.Biol., 321, 2002
1KWC
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THE HIS145ALA MUTANT OF 2,3-DIHYDROXYBIPHENYL DIOXYGENASE IN COMPLEX WITH 2,3-DIHYDROXYBIPHENYL
Descriptor:2,3-dihydroxybiphenyl dioxygenase, BIPHENYL-2,3-DIOL
Authors:Sato, N., Uragami, Y., Nishizaki, T., Takahashi, Y., Sazaki, G., Sugimoto, K., Nonaka, T., Masai, E., Fukuda, M., Senda, T.
Deposit date:2002-01-29
Release date:2003-01-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase
J.Mol.Biol., 321, 2002
3WKU
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CRYSTAL STRUCTURE OF THE ANAEROBIC DESB-GALLATE COMPLEX
Descriptor:Gallate dioxygenase, FE (III) ION, 3,4,5-trihydroxybenzoic acid
Authors:Sugimoto, K., Senda, M., Kasai, D., Fukuda, M., Masai, E., Senda, T.
Deposit date:2013-10-31
Release date:2014-04-30
Last modified:2018-02-14
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6
Plos One, 9, 2014
3WPM
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CRYSTAL STRUCTURE OF THE ANAEROBIC DESB-GALLATE COMPLEX BY CO-CRYSTALLIZATION
Descriptor:Gallate dioxygenase, FE (III) ION, 3,4,5-trihydroxybenzoic acid
Authors:Sugimoto, K., Senda, M., Kasai, D., Fukuda, M., Masai, E., Senda, T.
Deposit date:2014-01-14
Release date:2014-04-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6
Plos One, 9, 2014
3WR3
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CRYSTAL STRUCTURE OF THE ANAEROBIC DESB-GALLATE COMPLEX
Descriptor:Gallate dioxygenase, FE (II) ION, 3,4,5-trihydroxybenzoic acid
Authors:Sugimoto, K., Senda, M., Kasai, D., Fukuda, M., Masai, E., Senda, T.
Deposit date:2014-02-13
Release date:2014-04-30
Last modified:2018-02-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6
Plos One, 9, 2014
3WR4
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CRYSTAL STRUCTURE OF THE ANAEROBIC DESB-GALLATE COMPLEX
Descriptor:Gallate dioxygenase, FE (III) ION, 3,4,5-trihydroxybenzoic acid
Authors:Sugimoto, K., Senda, M., Kasai, D., Fukuda, M., Masai, E., Senda, T.
Deposit date:2014-02-13
Release date:2014-04-30
Last modified:2018-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6
Plos One, 9, 2014
3WR8
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CRYSTAL STRUCTURE OF DESB FROM SPHINGOBIUM SP. STRAIN SYK-6
Descriptor:Gallate dioxygenase, FE (II) ION
Authors:Sugimoto, K., Senda, M., Kasai, D., Fukuda, M., Masai, E., Senda, T.
Deposit date:2014-02-21
Release date:2014-04-30
Last modified:2018-02-14
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6
Plos One, 9, 2014
3WR9
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CRYSTAL STRUCTURE OF THE ANAEROBIC DESB-GALLATE COMPLEX
Descriptor:Gallate dioxygenase, FE (II) ION, 3,4,5-trihydroxybenzoic acid
Authors:Sugimoto, K., Senda, M., Kasai, D., Fukuda, M., Masai, E., Senda, T.
Deposit date:2014-02-21
Release date:2014-04-30
Last modified:2018-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6
Plos One, 9, 2014
3WRA
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CRYSTAL STRUCTURE OF THE DESB-GALLATE COMPLEX EXPOSED TO AEROBIC ATOMOSPHERE
Descriptor:Gallate dioxygenase, FE (II) ION
Authors:Sugimoto, K., Senda, M., Kasai, D., Fukuda, M., Masai, E., Senda, T.
Deposit date:2014-02-21
Release date:2014-04-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6
Plos One, 9, 2014
3WRB
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CRYSTAL STRUCTURE OF THE ANAEROBIC H124F DESB-GALLATE COMPLEX
Descriptor:Gallate dioxygenase, FE (II) ION, 3,4,5-trihydroxybenzoic acid
Authors:Sugimoto, K., Senda, M., Kasai, D., Fukuda, M., Masai, E., Senda, T.
Deposit date:2014-02-21
Release date:2014-04-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6
Plos One, 9, 2014
3WRC
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CRYSTAL STRUCTURE OF THE ANAEROBIC DESB-PROTOCATECHUATE (PCA) COMPLEX
Descriptor:Gallate dioxygenase, FE (II) ION, 3,4-DIHYDROXYBENZOIC ACID
Authors:Sugimoto, K., Senda, M., Kasai, D., Fukuda, M., Masai, E., Senda, T.
Deposit date:2014-02-21
Release date:2014-04-30
Last modified:2018-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6
Plos One, 9, 2014
1B4U
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PROTOCATECHUATE 4,5-DIOXYGENASE (LIGAB) IN COMPLEX WITH PROTOCATECHUATE (PCA)
Descriptor:PROTOCATECHUATE 4,5-DIOXYGENASE, FE (III) ION, 3,4-DIHYDROXYBENZOIC ACID
Authors:Sugimoto, K., Senda, T., Mitsui, Y.
Deposit date:1998-12-29
Release date:1999-08-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of an aromatic ring opening dioxygenase LigAB, a protocatechuate 4,5-dioxygenase, under aerobic conditions.
Structure Fold.Des., 7, 1999
1BOU
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THREE-DIMENSIONAL STRUCTURE OF LIGAB
Descriptor:4,5-DIOXYGENASE ALPHA CHAIN, 4,5-DIOXYGENASE BETA CHAIN, FE (III) ION
Authors:Sugimoto, K., Senda, T., Fukuda, M., Mitsui, Y.
Deposit date:1998-08-06
Release date:1999-05-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of an aromatic ring opening dioxygenase LigAB, a protocatechuate 4,5-dioxygenase, under aerobic conditions.
Structure, 7, 1999
1C4X
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2-HYDROXY-6-OXO-6-PHENYLHEXA-2,4-DIENOATE HYDROLASE (BPHD) FROM RHODOCOCCUS SP. STRAIN RHA1
Descriptor:PROTEIN (2-HYDROXY-6-OXO-6-PHENYLHEXA-2,4-DIENOATE HYDROLASE)
Authors:Nandhagopal, N., Senda, T., Mitsui, Y.
Deposit date:1999-09-30
Release date:1999-10-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Three-Dimensional Structure of Microbial 2-Hydroxyl-6-Oxo-6-Phenylhexa-2,4- Dienoic Acid (Hpda) Hydrolase (Bphd Enzyme) from Rhodococcus Sp. Strain Rha1, in the Pcb Degradation Pathway
Proc.Jpn.Acad.,Ser.B, 73, 1997
1EIL
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2,3-DIHYDROXYBIPHENYL-1,2-DIOXYGENASE
Descriptor:2,3-DIHYDROXYBIPHENYL 1,2-DIOXYGENASE, SULFATE ION, FE (III) ION
Authors:Senda, T.
Deposit date:2000-02-26
Release date:2001-02-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of substrate free and complex forms of reactivated BphC, an extradiol type ring-cleavage dioxygenase.
J.Inorg.Biochem., 83, 2001
1EIQ
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2,3-DIHYDROXYBIPHENYL-1,2-DIOXYGENASE
Descriptor:2,3-DIHYDROXYBIPHENYL-1,2-DIOXYGENASE, FE (III) ION
Authors:Senda, T.
Deposit date:2000-02-28
Release date:2001-02-28
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of substrate free and complex forms of reactivated BphC, an extradiol type ring-cleavage dioxygenase.
J.Inorg.Biochem., 83, 2001
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