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2IPB
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CRYSTAL STRUCTURE OF T159D MUTANT OF S. TYPHIMURIUM PHON PROTEIN
Descriptor:Class A nonspecific acid phosphatase PhoN
Authors:Makde, R.D., Kumar, V.
Deposit date:2006-10-12
Release date:2007-03-06
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Structure and Mutational Analysis of the PhoN Protein of Salmonella typhimurium Provide Insight into Mechanistic Details
Biochemistry, 46, 2007
1Z5G
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CRYSTAL STRUCTURE OF SALMONELLA TYPHIMURIUM APHA PROTEIN
Descriptor:AphA protein, MAGNESIUM ION, PHOSPHATE ION
Authors:Makde, R.D., Kumar, V.
Deposit date:2005-03-18
Release date:2006-03-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and mutational analyses reveal the functional role of active-site Lys-154 and Asp-173 of Salmonella typhimurium AphA protein.
Arch.Biochem.Biophys., 464, 2007
1Z5U
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CRYSTAL STRUCTURE OF S. TYPHIMURIUM APHA COMPLEXED WITH CYCLIC-AMP
Descriptor:AphA protein, MAGNESIUM ION, ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
Authors:Makde, R.D., Kumar, V.
Deposit date:2005-03-20
Release date:2006-03-21
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure and Function of class-B bacterial non-specific acid phosphatase: functional role of invariant Lys154
To be Published
1Z88
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CRYSTAL STRUCTURE OF LYS154ARG MUTANT OF MATURE APHA OF S. TYPHIMURIUM
Descriptor:AphA protein, MAGNESIUM ION
Authors:Makde, R.D., Gupta, G.D., Kumar, V.
Deposit date:2005-03-30
Release date:2006-04-04
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and mutational analyses reveal the functional role of active-site Lys-154 and Asp-173 of Salmonella typhimurium AphA protein.
Arch.Biochem.Biophys., 464, 2007
2A96
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CRYSTAL STRUCTURE OF PHOSPHATE TETHERED PHON OF S. TYPHIMURIUM
Descriptor:class A nonspecific acid phosphatase PhoN, PHOSPHATE ION
Authors:Makde, R.D., Mahajan, S.K., Kumar, V.
Deposit date:2005-07-11
Release date:2006-05-23
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure and Mutational Analysis of the PhoN Protein of Salmonella typhimurium Provide Insight into Mechanistic Details.
Biochemistry, 46, 2007
2AKC
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CRYSTAL STRUCTURE OF TUNGSTATE COMPLEX OF THE PHON PROTEIN FROM S. TYPHIMURIUM
Descriptor:class A nonspecific acid phosphatase PhoN, TUNGSTATE(VI)ION
Authors:Makde, R.D., Kumar, V.
Deposit date:2005-08-03
Release date:2006-05-23
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure and Mutational Analysis of the PhoN Protein of Salmonella typhimurium Provide Insight into Mechanistic Details.
Biochemistry, 46, 2007
2AUT
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CRYSTAL STRUCTURE OF LYS154ASN MUTANT OF MATURE APHA OF S. TYPHIMURIUM
Descriptor:AphA, MAGNESIUM ION, SODIUM ION, ...
Authors:Makde, R.D., Gupta, G.D., Kumar, V.
Deposit date:2005-08-29
Release date:2006-09-05
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural and mutational analyses reveal the functional role of active-site Lys-154 and Asp-173 of Salmonella typhimurium AphA protein.
Arch.Biochem.Biophys., 464, 2007
3MVD
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CRYSTAL STRUCTURE OF THE CHROMATIN FACTOR RCC1 IN COMPLEX WITH THE NUCLEOSOME CORE PARTICLE
Descriptor:Histone H3.2, Histone H4, Histone H2A, ...
Authors:Makde, R.D., England, J.R., Yennawar, H.P., Tan, S.
Deposit date:2010-05-04
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure of RCC1 chromatin factor bound to the nucleosome core particle.
Nature, 467, 2010
2QRX
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CRYSTAL STRUCTURE OF DROSOPHILA MELANOGASTER TRANSLIN PROTEIN
Descriptor:GM27569p
Authors:Gupta, G.D., Makde, R.D., Kumar, V.
Deposit date:2007-07-30
Release date:2008-08-05
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Crystal structures of Drosophila mutant translin and characterization of translin variants reveal the structural plasticity of translin proteins.
Febs J., 275, 2008
2QVA
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CRYSTAL STRUCTURE OF DROSOPHILA MELANOGASTER TRANSLIN PROTEIN
Descriptor:GM27569p
Authors:Gupta, G.D., Makde, R.D., Kumar, V.
Deposit date:2007-08-08
Release date:2008-08-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Crystal structures of Drosophila mutant translin and characterization of translin variants reveal the structural plasticity of translin proteins.
Febs J., 275, 2008
4R60
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CRYSTAL STRUCTURE OF XAA-PRO DIPEPTIDASE FROM XANTHOMONAS CAMPESTRIS
Descriptor:Proline dipeptidase, PHOSPHATE ION, MANGANESE (II) ION, ...
Authors:Kumar, A., Ghosh, B., Are, V.N., Jamdar, S.N., Makde, R.D., Sharma, S.M.
Deposit date:2014-08-22
Release date:2014-09-17
Last modified:2016-04-20
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris
to be published
5CIK
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CRYSTAL STRUCTURE OF XAA-PRO DIPEPTIDASE FROM XANTHOMONAS CAMPESTRIS IN CITRATE CONDITION
Descriptor:Proline dipeptidase, CITRIC ACID, GLYCEROL
Authors:Kumar, A., Are, V., Ghosh, B., Agrawal, U., Jamdar, S., Makde, R.D.
Deposit date:2015-07-13
Release date:2016-07-20
Last modified:2018-07-04
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris in citrate condition
To Be Published
5CNX
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CRYSTAL STRUCTURE OF XAA-PRO AMINOPEPTIDASE FROM ESCHERICHIA COLI K12
Descriptor:Aminopeptidase YpdF, ZINC ION, CACODYLATE ION, ...
Authors:Kumar, A., Are, V., Ghosh, B., Jamdar, S., Makde, R.D.
Deposit date:2015-07-18
Release date:2016-07-20
Last modified:2019-01-16
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structures and activities of widely conserved small prokaryotic aminopeptidases-P clarify classification of M24B peptidases
Proteins, 2018
5FCF
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CRYSTAL STRUCTURE OF XAA-PRO DIPEPTIDASE FROM XANTHOMONAS CAMPESTRIS, PHOSPHATE AND MN BOUND
Descriptor:Proline dipeptidase, GLY-GLY-GLY, MANGANESE (II) ION, ...
Authors:Kumar, A., Are, V., Ghosh, B., Jamdar, S., Makde, R.D.
Deposit date:2015-12-15
Release date:2016-12-07
Last modified:2017-01-18
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure and biochemical investigations reveal novel mode of substrate selectivity and illuminate substrate inhibition and allostericity in a subfamily of Xaa-Pro dipeptidases.
Biochim. Biophys. Acta, 1865, 2017
5FCH
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CRYSTAL STRUCTURE OF XAA-PRO DIPEPTIDASE FROM XANTHOMONAS CAMPESTRIS, PHOSPHATE AND ZN BOUND
Descriptor:Proline dipeptidase, GLY-GLY-GLY, ZINC ION, ...
Authors:Kumar, A., Are, V., Ghosh, B., Jamdar, S., Makde, R.D.
Deposit date:2015-12-15
Release date:2016-12-07
Last modified:2017-01-18
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure and biochemical investigations reveal novel mode of substrate selectivity and illuminate substrate inhibition and allostericity in a subfamily of Xaa-Pro dipeptidases
Biochim. Biophys. Acta, 1865, 2017
5GIQ
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XAA-PRO PEPTIDASE FROM DEINOCOCCUS RADIODURANS, ZINC BOUND
Descriptor:Proline dipeptidase, PHOSPHATE ION, ZINC ION
Authors:Are, V.N., Singh, R., Kumar, A., Ghosh, B., Jamdar, S.N., Makde, R.D.
Deposit date:2016-06-24
Release date:2017-06-28
Last modified:2019-01-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structures and activities of widely conserved small prokaryotic aminopeptidases-P clarify classification of M24B peptidases.
Proteins, 2018
5GIU
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CRYSTAL STRUCTURE OF XAA-PRO PEPTIDASE FROM DEINOCOCCUS RADIODURANS, METAL-FREE ACTIVE SITE
Descriptor:Proline dipeptidase, PHOSPHATE ION, SODIUM ION
Authors:Are, V.N., Kumar, A., Singh, R., Ghosh, B., Jamdar, S.N., Makde, R.D.
Deposit date:2016-06-25
Release date:2017-06-28
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Xaa-Pro peptidase from Deinococcus radiodurans, metal-free active site
To Be Published
5GIV
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CRYSTAL STRUCTURE OF M32 CARBOXYPEPTIDASE FROM DEINOCOCCUS RADIODURANS R1
Descriptor:Carboxypeptidase 1, ZINC ION, ACETATE ION
Authors:Sharma, B., Singh, R., Yadav, P., Ghosh, B., Kumar, A., Jamdar, S.N., Makde, R.D.
Deposit date:2016-06-25
Release date:2017-07-12
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Active site gate of M32 carboxypeptidases illuminated by crystal structure and molecular dynamics simulations
Biochim. Biophys. Acta, 1865, 2017
5X49
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CRYSTAL STRUCTURE OF HUMAN MITOCHONDRIAL X-PROLYL AMINOPEPTIDASE (XPNPEP3)
Descriptor:Probable Xaa-Pro aminopeptidase 3, MANGANESE (II) ION, DODECAETHYLENE GLYCOL, ...
Authors:Singh, R., Kumar, A., Ghosh, B., Jamdar, S., Makde, R.D.
Deposit date:2017-02-10
Release date:2017-05-17
Last modified:2017-12-06
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structure of the human aminopeptidase XPNPEP3 and comparison of its in vitro activity with Icp55 orthologs: Insights into diverse cellular processes.
J. Biol. Chem., 292, 2017
5XEV
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CRYSTAL STRUCTURE OF A NOVEL XAA-PRO DIPEPTIDASE FROM DEINOCOCCUS RADIODURANS
Descriptor:Xaa-Pro dipeptidase,Peptidase-related protein, ZINC ION, PHOSPHATE ION, ...
Authors:Are, V.N., Kumar, A., Ghosh, B., Makde, R.D.
Deposit date:2017-04-06
Release date:2017-10-18
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of a novel prolidase from Deinococcus radiodurans identifies new subfamily of bacterial prolidases.
Proteins, 85, 2017
5YZM
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CRYSTAL STRUCTURE OF S9 PEPTIDASE (INACTIVE FORM) FROM DEINOCOCCUS RADIODURANS R1
Descriptor:Acyl-peptide hydrolase, putative, ACETATE ION
Authors:Yadav, P., Jamdar, S.N., Kumar, A., Ghosh, B., Makde, R.D.
Deposit date:2017-12-15
Release date:2018-11-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of S9C peptidase (S154A) mutant from Deinococcus radiodurans R1
J.Biol.Chem., 2018
5YZN
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CRYSTAL STRUCTURE OF S9 PEPTIDASE (ACTIVE FORM) FROM DEINOCOCCUS RADIODURANS R1
Descriptor:Acyl-peptide hydrolase, putative
Authors:Yadav, P., Jamdar, S.N., Kumar, A., Ghosh, B., Makde, R.D.
Deposit date:2017-12-15
Release date:2018-11-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of S9C peptidase (S154A) mutant from Deinococcus radiodurans R1
J.Biol.Chem., 2018
5YZO
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CRYSTAL STRUCTURE OF S9 PEPTIDASE MUTANT (S514A) FROM DEINOCOCCUS RADIODURANS R1
Descriptor:Acyl-peptide hydrolase, putative, DIMETHYL SULFOXIDE, ...
Authors:Yadav, P., Jamdar, S.N., Kumar, A., Ghosh, B., Makde, R.D.
Deposit date:2017-12-15
Release date:2018-11-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of S9C peptidase (S154A) mutant from Deinococcus radiodurans R1
J.Biol.Chem., 2018
5Z40
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CRYSTAL STRUCTURE OF PYRROLIDONE CARBOXYLATE PEPTIDASE I FROM DEIONOCOCCUS RADIODURANS R1
Descriptor:Pyrrolidone-carboxylate peptidase
Authors:Agrawal, R., Kumar, A., Makde, R.D.
Deposit date:2018-01-09
Release date:2019-01-16
Method:X-RAY DIFFRACTION (1.837 Å)
Cite:Crystal structures of pyrrolidone carboxylate peptidase I from Deionococcus radiodurans reveal the mechanism of L-pyroglutamate recognition
To Be Published
5Z47
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CRYSTAL STRUCTURE OF PYRROLIDONE CARBOXYLATE PEPTIDASE I WITH DISORDERED LOOP A FROM DEINOCOCCUS RADIODURANS R1
Descriptor:Pyrrolidone-carboxylate peptidase, DIMETHYL SULFOXIDE
Authors:Agrawal, R., Kumar, A., Kumar, A., Makde, R.D.
Deposit date:2018-01-10
Release date:2019-01-16
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structures of pyrrolidone carboxylate peptidase I from Deinococcus radiodurans reveal the mechanism of L-pyroglutamate recognition
To Be Published
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