2ZVY
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5Y40
| Structure of the periplasmic domain of the MotB L119P mutant from Salmonella (crystal form 2) | Descriptor: | Motility protein B | Authors: | Takao, M, Kojima, S, Sakuma, M, Homma, M, Imada, K. | Deposit date: | 2017-07-31 | Release date: | 2018-04-11 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | The Helix Rearrangement in the Periplasmic Domain of the Flagellar Stator B Subunit Activates Peptidoglycan Binding and Ion Influx. Structure, 26, 2018
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5Y3Z
| Structure of the periplasmic domain of the MotB L119P mutant from Salmonella (crystal form 1) | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, ARGININE, IMIDAZOLE, ... | Authors: | Takao, M, Kojima, S, Sakuma, M, Homma, M, Imada, K. | Deposit date: | 2017-07-31 | Release date: | 2018-04-11 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | The Helix Rearrangement in the Periplasmic Domain of the Flagellar Stator B Subunit Activates Peptidoglycan Binding and Ion Influx. Structure, 26, 2018
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2ZVZ
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2ZOV
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2ZF8
| Crystal structure of MotY | Descriptor: | Component of sodium-driven polar flagellar motor | Authors: | Imada, K, Kojima, S, Namba, K, Homma, M. | Deposit date: | 2007-12-25 | Release date: | 2008-07-08 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (2.85 Å) | Cite: | Insights into the stator assembly of the Vibrio flagellar motor from the crystal structure of MotY Proc.Natl.Acad.Sci.Usa, 105, 2008
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1V5I
| Crystal structure of serine protease inhibitor POIA1 in complex with subtilisin BPN' | Descriptor: | CALCIUM ION, GLYCEROL, IA-1=serine proteinase inhibitor, ... | Authors: | Lee, W.C, Kikkawa, M, Kojima, S, Miura, K, Tanokura, M. | Deposit date: | 2003-11-24 | Release date: | 2005-03-08 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Crystal structure of serine protease inhibitor POIA1 in complex with subtilisin BPN' To be Published
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1ITP
| Solution Structure of POIA1 | Descriptor: | proteinase A inhibitor 1 | Authors: | Sasakawa, H, Yoshinaga, S, Kojima, S, Tamura, A. | Deposit date: | 2002-01-23 | Release date: | 2002-02-13 | Last modified: | 2023-12-27 | Method: | SOLUTION NMR | Cite: | Structure of POIA1, a homologous protein to the propeptide of subtilisin: implication for protein foldability and the function as an intramolecular chaperone. J.Mol.Biol., 317, 2002
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1IY6
| Solution structure of OMSVP3 variant, P14C/N39C | Descriptor: | OMSVP3 | Authors: | Hemmi, H, Kumazaki, T, Yamazaki, T, Kojima, S, Yoshida, T, Kyogoku, Y, Katsu, M, Yokosawa, H, Miura, K, Kobayashi, Y. | Deposit date: | 2002-07-23 | Release date: | 2003-03-11 | Last modified: | 2023-12-27 | Method: | SOLUTION NMR | Cite: | Inhibitory Specificity Change of Ovomucoid Third Domain of the Silver Pheasant upon Introduction of an Engineered Cys14-Cys39 Bond BIOCHEMISTRY, 42, 2003
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1IY5
| Solution structure of wild type OMSVP3 | Descriptor: | OMSVP3 | Authors: | Hemmi, H, Kumazaki, T, Yamazaki, T, Kojima, S, Yoshida, T, Kyogoku, Y, Katsu, M, Yokosawa, H, Miura, K, Kobayashi, Y. | Deposit date: | 2002-07-23 | Release date: | 2003-03-11 | Last modified: | 2023-12-27 | Method: | SOLUTION NMR | Cite: | Inhibitory Specificity Change of Ovomucoid Third Domain of the Silver Pheasant upon Introduction of an Engineered Cys14-Cys39 Bond BIOCHEMISTRY, 42, 2003
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6AHP
| Structure of the 58-167 fragment of FliL | Descriptor: | Flagellar protein FliL | Authors: | Takekawa, N, Isumi, M, Sakuma, M, Kojima, S, Homma, M, Imada, K. | Deposit date: | 2018-08-20 | Release date: | 2019-03-06 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Structure ofVibrioFliL, a New Stomatin-like Protein That Assists the Bacterial Flagellar Motor Function. MBio, 10, 2019
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6AHQ
| Structure of the 40-167 fragment of FliL | Descriptor: | Flagellar protein FliL | Authors: | Takekawa, N, Isumi, M, Sakuma, M, Kojima, S, Homma, M, Imada, K. | Deposit date: | 2018-08-20 | Release date: | 2019-03-06 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (3.398 Å) | Cite: | Structure ofVibrioFliL, a New Stomatin-like Protein That Assists the Bacterial Flagellar Motor Function. MBio, 10, 2019
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8W9G
| Hepatitis B virus core protein Y132A mutant in complex with CBT-078 | Descriptor: | 2-fluoranyl-N1-(4-fluorophenyl)-N3-(2-methylphenyl)benzene-1,3-dicarboxamide, Capsid protein | Authors: | Iwasaki, W, Katsura, K, Tomabechi, Y, Niwa, H, Ogawa, K, Kojima, S, Shirouzu, M. | Deposit date: | 2023-09-05 | Release date: | 2024-09-11 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Screening systems for the detection of hepatitis B virus replication and capsid assembly To Be Published
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6IF6
| Structure of the periplasmic domain of SflA | Descriptor: | GLYCEROL, PHOSPHATE ION, Protein SflA | Authors: | Nishikawa, S, Sakuma, M, Kojima, S, Homma, M, Imada, K. | Deposit date: | 2018-09-18 | Release date: | 2019-05-01 | Last modified: | 2024-03-27 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Structure of the periplasmic domain of SflA involved in spatial regulation of the flagellar biogenesis of Vibrio reveals a TPR/SLR-like fold. J.Biochem., 166, 2019
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3WPW
| Structure of PomBc5, a periplasmic fragment of PomB from Vibrio | Descriptor: | ACETATE ION, PomB | Authors: | Takao, M, Sakuma, M, Zhu, S, Homma, M, Kojima, S, Imada, K. | Deposit date: | 2014-01-17 | Release date: | 2014-09-10 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Conformational change in the periplasmic region of the flagellar stator coupled with the assembly around the rotor Proc. Natl. Acad. Sci. U.S.A., 111, 2014
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3WPX
| Structure of PomBc4, a periplasmic fragment of PomB from Vibrio alginolyticus | Descriptor: | PomB | Authors: | Takao, M, Sakuma, M, Zhu, S, Homma, M, Kojima, S, Imada, K. | Deposit date: | 2014-01-17 | Release date: | 2014-09-10 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Conformational change in the periplasmic region of the flagellar stator coupled with the assembly around the rotor Proc. Natl. Acad. Sci. U.S.A., 111, 2014
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7Y8V
| Crystal structure of AlbEF homolog mutant (AlbF-H54A/H58A) from Quasibacillus thermotolerans | Descriptor: | 1,2-ETHANEDIOL, AlbE homolog, AlbF homolog H54A/H58A mutant, ... | Authors: | Ishida, K, Nakamura, A, Kojima, S. | Deposit date: | 2022-06-24 | Release date: | 2022-10-12 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Crystal structure of the AlbEF complex involved in subtilosin A biosynthesis. Structure, 30, 2022
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7Y8U
| Crystal structure of AlbEF homolog from Quasibacillus thermotolerans | Descriptor: | 1,2-ETHANEDIOL, AlbE homolog, AlbF homolog, ... | Authors: | Ishida, K, Nakamura, A, Kojima, S. | Deposit date: | 2022-06-24 | Release date: | 2022-10-12 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Crystal structure of the AlbEF complex involved in subtilosin A biosynthesis. Structure, 30, 2022
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7Y8X
| Crystal structure of AlbEF homolog from Quasibacillus thermotolerans in complex with Ni(II) | Descriptor: | 1,2-ETHANEDIOL, AlbE homolog, AlbF homolog, ... | Authors: | Ishida, K, Nakamura, A, Kojima, S. | Deposit date: | 2022-06-24 | Release date: | 2022-10-12 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.25 Å) | Cite: | Crystal structure of the AlbEF complex involved in subtilosin A biosynthesis. Structure, 30, 2022
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7CIK
| Structure of the 58-213 fragment of FliF | Descriptor: | (4R)-2-METHYLPENTANE-2,4-DIOL, Flagellar M-ring protein | Authors: | Takekawa, T, Sakuma, M, Kojima, S, Homma, M, Imada, K. | Deposit date: | 2020-07-07 | Release date: | 2021-02-17 | Last modified: | 2021-09-01 | Method: | X-RAY DIFFRACTION (2.29 Å) | Cite: | Two Distinct Conformations in 34 FliF Subunits Generate Three Different Symmetries within the Flagellar MS-Ring. Mbio, 12, 2021
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3WNZ
| Crystal structure of Bacillus subtilis YwfE, an L-amino acid ligase, with bound ADP-Mg-Pi | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, Alanine-anticapsin ligase BacD, MAGNESIUM ION, ... | Authors: | Tsuda, T, Kojima, S. | Deposit date: | 2013-12-19 | Release date: | 2014-05-14 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Single Mutation Alters the Substrate Specificity of l-Amino Acid Ligase Biochemistry, 53, 2014
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3WO0
| Crystal structure of Bacillus subtilis YwfE, an L-amino acid ligase, with bound ADP-Mg-Ala | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ALANINE, Alanine-anticapsin ligase BacD, ... | Authors: | Tsuda, T, Kojima, S. | Deposit date: | 2013-12-19 | Release date: | 2014-05-14 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Single Mutation Alters the Substrate Specificity of l-Amino Acid Ligase Biochemistry, 53, 2014
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3WO1
| Crystal structure of Trp332Ala mutant YwfE, an L-amino acid ligase, with bound ADP-Mg-Ala | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ALANINE, Alanine-anticapsin ligase BacD, ... | Authors: | Tsuda, T, Kojima, S. | Deposit date: | 2013-12-19 | Release date: | 2014-05-14 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Single Mutation Alters the Substrate Specificity of l-Amino Acid Ligase Biochemistry, 53, 2014
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8GQY
| CryoEM structure of pentameric MotA from Aquifex aeolicus | Descriptor: | Motility protein A | Authors: | Nishikino, T, Takekawa, N, Kishikawa, J, Hirose, M, Onoe, S, Kato, T, Imada, K. | Deposit date: | 2022-08-31 | Release date: | 2022-10-26 | Last modified: | 2024-07-03 | Method: | ELECTRON MICROSCOPY (3.4 Å) | Cite: | Structure of MotA, a flagellar stator protein, from hyperthermophile. Biochem.Biophys.Res.Commun., 631, 2022
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5SIC
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