Author results

1ZR7
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SOLUTION STRUCTURE OF THE FIRST WW DOMAIN OF FBP11
Descriptor:huntingtin-interacting protein HYPA/FBP11
Authors:Kato, Y., Hino, Y., Tanokura, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-19
Release date:2006-05-30
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure and binding specificity of FBP11/HYPA WW domain as Group-II/III
Proteins, 63, 2006
1GIF
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HUMAN GLYCOSYLATION-INHIBITING FACTOR
Descriptor:GLYCOSYLATION-INHIBITING FACTOR
Authors:Kato, Y., Kuroki, R.
Deposit date:1996-02-27
Release date:1997-03-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The crystal structure of human glycosylation-inhibiting factor is a trimeric barrel with three 6-stranded beta-sheets.
Proc.Natl.Acad.Sci.USA, 93, 1996
1LF8
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COMPLEX OF GGA3-VHS DOMAIN AND CI-MPR C-TERMINAL PHOSPHOPEPTIDE
Descriptor:ADP-ribosylation factor binding protein GGA3, Cation-independent mannose-6-phosphate receptor
Authors:Kato, Y., Misra, S., Puertollano, R., Hurley, J.H., Bonifacino, J.S.
Deposit date:2002-04-10
Release date:2002-06-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Phosphoregulation of sorting signal-VHS domain interactions by a direct electrostatic mechanism.
Nat.Struct.Biol., 9, 2002
2DYF
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SOLUTION STRUCTURE OF THE FIRST WW DOMAIN OF FBP11 / HYPA (FBP11 WW1) COMPLEXED WITH A PL (PPLP) MOTIF PEPTIDE LIGAND
Descriptor:Huntingtin-interacting protein HYPA/FBP11, PL (PPLP) motif peptide from Myosin tail region-interacting protein MTI1
Authors:Kato, Y., Miyakawa, T., Kurita, J., Tanokura, M.
Deposit date:2006-09-11
Release date:2006-10-24
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Complex structure of fbp11 ww1 and a pl ligand reveals the mechanism of proline-rich ligand recognition by group-II/III ww domains
To be Published
5ZJ9
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HUMAN D-AMINO ACID OXIDASE COMPLEXED WITH 5-CHLOROTHIOPHENE-3-CARBOXYLIC ACID
Descriptor:D-amino-acid oxidase, FLAVIN-ADENINE DINUCLEOTIDE, 5-chloro thiophene-3-carboxylic acid
Authors:Kato, Y., Hin, N., Maita, N., Thomas, A.G., Kurosawa, S., Rojas, C., Yorita, K., Slusher, B.S., Fukui, K., Tsukamoto, T.
Deposit date:2018-03-19
Release date:2018-10-10
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for potent inhibition of d-amino acid oxidase by thiophene carboxylic acids
Eur J Med Chem, 159, 2018
5ZJA
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HUMAN D-AMINO ACID OXIDASE COMPLEXED WITH 5-CHLOROTHIOPHENE-2-CARBOXYLIC ACID
Descriptor:D-amino-acid oxidase, FLAVIN-ADENINE DINUCLEOTIDE, 5-chloro thiophene-2-carboxylic acid
Authors:Kato, Y., Hin, N., Maita, N., Thomas, A.G., Kurosawa, S., Rojas, C., Yorita, K., Slusher, B.S., Fukui, K., Tsukamoto, T.
Deposit date:2018-03-19
Release date:2018-10-10
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for potent inhibition of d-amino acid oxidase by thiophene carboxylic acids
Eur J Med Chem, 159, 2018
1IV7
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CRYSTAL STRUCTURE OF SINGLE CHAIN MONELLIN
Descriptor:Monellin
Authors:Tamada, T., Kato, Y., Kuroki, R.
Deposit date:2002-03-15
Release date:2003-10-07
Last modified:2017-08-23
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:The Effect of Single Chain Derivatization on the Structure and Stability of the Monellin
To be Published
1IV9
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CRYSTAL STRUCTURE OF SINGLE CHAIN MONELLIN
Descriptor:Monellin
Authors:Tamada, T., Kato, Y., Kuroki, R.
Deposit date:2002-03-15
Release date:2003-10-07
Last modified:2017-08-23
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The Effect of Single Chain Derivatization on the Structure and Stability of the Monellin
To be Published
1V7M
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HUMAN THROMBOPOIETIN FUNCTIONAL DOMAIN COMPLEXED TO NEUTRALIZING ANTIBODY TN1 FAB
Descriptor:Monoclonal TN1 Fab Light Chain, Monoclonal TN1 Fab Heavy Chain, Thrombopoietin
Authors:Feese, M.D., Tamada, T., Kato, Y., Maeda, Y., Hirose, M., Matsukura, Y., Shigematsu, H., Kato, T., Miyazaki, H., Kuroki, R.
Deposit date:2003-12-18
Release date:2004-03-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Structure of the receptor-binding domain of human thrombopoietin determined by complexation with a neutralizing antibody fragment
Proc.Natl.Acad.Sci.USA, 101, 2004
1V7N
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HUMAN THROMBOPOIETIN FUNCTIONAL DOMAIN COMPLEXED TO NEUTRALIZING ANTIBODY TN1 FAB
Descriptor:Monoclonal TN1 Fab Light Chain, Monoclonal TN1 Fab Heavy Chain, Thrombopoietin
Authors:Feese, M.D., Tamada, T., Kato, Y., Maeda, Y., Hirose, M., Matsukura, Y., Shigematsu, H., Kato, T., Miyazaki, H., Kuroki, R.
Deposit date:2003-12-18
Release date:2004-03-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structure of the receptor-binding domain of human thrombopoietin determined by complexation with a neutralizing antibody fragment
Proc.Natl.Acad.Sci.USA, 101, 2004
3WSR
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CRYSTAL STRUCTURE OF CLEC-2 IN COMPLEX WITH O-GLYCOSYLATED PODOPLANIN
Descriptor:C-type lectin domain family 1 member B, Peptide from Podoplanin, N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE, ...
Authors:Nagae, M., Morita-Matsumoto, K., Kato, M., Kato-Kaneko, M., Kato, Y., Yamaguchi, Y.
Deposit date:2014-03-20
Release date:2014-10-22
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:A Platform of C-type Lectin-like Receptor CLEC-2 for Binding O-Glycosylated Podoplanin and Nonglycosylated Rhodocytin
Structure, 22, 2014
3WWK
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CRYSTAL STRUCTURE OF CLEC-2 IN COMPLEX WITH RHODOCYTIN
Descriptor:C-type lectin domain family 1 member B, Snaclec rhodocytin subunit alpha, Snaclec rhodocytin subunit beta
Authors:Nagae, M., Morita-Matsumoto, K., Kato, M., Kato-Kaneko, M., Kato, Y., Yamaguchi, Y.
Deposit date:2014-06-20
Release date:2014-10-22
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.98 Å)
Cite:A Platform of C-type Lectin-like Receptor CLEC-2 for Binding O-Glycosylated Podoplanin and Nonglycosylated Rhodocytin
Structure, 22, 2014
3X3B
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CRYSTAL STRUCTURE OF THE LIGHT-DRIVEN SODIUM PUMP KR2 IN ACIDIC STATE
Descriptor:Sodium pumping rhodopsin, RETINAL, OLEIC ACID, ...
Authors:Kato, H.E., Inoue, K., Abe-Yoshizumi, R., Kato, Y., Ono, H., Konno, M., Ishizuka, T., Hoque, M.R., Hososhima, S., Kunitomo, H., Ito, J., Yoshizawa, S., Yamashita, K., Takemoto, M., Nishizawa, T., Taniguchi, R., Kogure, K., Maturana, A.D., Iino, Y., Yawo, H., Ishitani, R., Kandori, H., Nureki, O.
Deposit date:2015-01-18
Release date:2015-04-08
Last modified:2015-05-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for Na(+) transport mechanism by a light-driven Na(+) pump
Nature, 521, 2015
3X3C
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CRYSTAL STRUCTURE OF THE LIGHT-DRIVEN SODIUM PUMP KR2 IN NEUTRAL STATE
Descriptor:Sodium pumping rhodopsin, RETINAL, OLEIC ACID
Authors:Kato, H.E., Inoue, K., Abe-Yoshizumi, R., Kato, Y., Ono, H., Konno, M., Ishizuka, T., Hoque, M.R., Hososhima, S., Kunitomo, H., Ito, J., Yoshizawa, S., Yamashita, K., Takemoto, M., Nishizawa, T., Taniguchi, R., Kogure, K., Maturana, A.D., Iino, Y., Yawo, H., Ishitani, R., Kandori, H., Nureki, O.
Deposit date:2015-01-18
Release date:2015-04-08
Last modified:2015-05-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for Na(+) transport mechanism by a light-driven Na(+) pump
Nature, 521, 2015
1EH9
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CRYSTAL STRUCTURE OF SULFOLOBUS SOLFATARICUS GLYCOSYLTREHALOSE TREHALOHYDROLASE
Descriptor:GLYCOSYLTREHALOSE TREHALOHYDROLASE
Authors:Feese, M.D., Kato, Y., Tamada, T., Kato, M., Komeda, T., Kobayashi, K., Kuroki, R.
Deposit date:2000-02-19
Release date:2001-02-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of glycosyltrehalose trehalohydrolase from the hyperthermophilic archaeum Sulfolobus solfataricus.
J.Mol.Biol., 301, 2000
1EHA
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CRYSTAL STRUCTURE OF GLYCOSYLTREHALOSE TREHALOHYDROLASE FROM SULFOLOBUS SOLFATARICUS
Descriptor:GLYCOSYLTREHALOSE TREHALOHYDROLASE
Authors:Feese, M.D., Kato, Y., Tamada, T., Kato, M., Komeda, T., Kobayashi, K., Kuroki, R.
Deposit date:2000-02-19
Release date:2001-02-19
Last modified:2018-03-14
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of glycosyltrehalose trehalohydrolase from the hyperthermophilic archaeum Sulfolobus solfataricus.
J.Mol.Biol., 301, 2000
3A15
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CRYSTAL STRUCTURE OF SUBSTRATE-FREE FORM OF ALDOXIME DEHYDRATASE (OXDRE)
Descriptor:Aldoxime dehydratase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Sawai, H., Sugimoto, H., Kato, Y., Asano, Y., Shiro, Y., Aono, S.
Deposit date:2009-03-26
Release date:2009-09-08
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:X-ray crystal structure of michaelis complex of aldoxime dehydratase
J.Biol.Chem., 284, 2009
3A16
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CRYSTAL STRUCTURE OF ALDOXIME DEHYDRATASE (OXDRE) IN COMPLEX WITH PROPIONALDOXIME
Descriptor:Aldoxime dehydratase, PROTOPORPHYRIN IX CONTAINING FE, (1Z)-propanal oxime, ...
Authors:Sawai, H., Sugimoto, H., Kato, Y., Asano, Y., Shiro, Y., Aono, S.
Deposit date:2009-03-26
Release date:2009-09-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:X-ray crystal structure of michaelis complex of aldoxime dehydratase
J.Biol.Chem., 284, 2009
3A17
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CRYSTAL STRUCTURE OF ALDOXIME DEHYDRATASE (OXDRE) IN COMPLEX WITH BUTYRALDOXIME (CO-CRYSTAL)
Descriptor:Aldoxime dehydratase, PROTOPORPHYRIN IX CONTAINING FE, (1Z)-butanal oxime
Authors:Sawai, H., Sugimoto, H., Kato, Y., Asano, Y., Shiro, Y., Aono, S.
Deposit date:2009-03-26
Release date:2009-09-08
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:X-ray crystal structure of michaelis complex of aldoxime dehydratase
J.Biol.Chem., 284, 2009
3A18
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CRYSTAL STRUCTURE OF ALDOXIME DEHYDRATASE (OXDRE) IN COMPLEX WITH BUTYRALDOXIME (SOAKED CRYSTAL)
Descriptor:Aldoxime dehydratase, PROTOPORPHYRIN IX CONTAINING FE, (1Z)-butanal oxime
Authors:Sawai, H., Sugimoto, H., Kato, Y., Asano, Y., Shiro, Y., Aono, S.
Deposit date:2009-03-26
Release date:2009-09-08
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:X-ray crystal structure of michaelis complex of aldoxime dehydratase
J.Biol.Chem., 284, 2009
5TNO
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DISCOVERY OF NOVEL AMINOBENZISOXAZOLE DERIVATIVES AS ORALLY AVAILABLE FACTOR IXA INHIBITORS
Descriptor:Coagulation factor IX, UNKNOWN LIGAND, SODIUM ION, ...
Authors:Sakurada, I., Endo, T., Hikita, K., Hirabayashi, T., Hosaka, Y., Kato, Y., Maeda, Y., Matsumoto, S., Mizuno, T., Nagasue, H., Nishimura, T., Shimada, S., Shinozaki, M., Taguchi, K., Takeuchi, K., Yokoyama, T., Hruza, A., Reichert, P., Zhang, T., Wood, H.B., Nakao, K., Furusako, S.
Deposit date:2016-10-14
Release date:2017-04-26
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Discovery of novel aminobenzisoxazole derivatives as orally available factor IXa inhibitors.
Bioorg. Med. Chem. Lett., 27, 2017
5TNT
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DISCOVERY OF NOVEL AMINOBENZISOXAZOLE DERIVATIVES AS ORALLY AVAILABLE FACTOR IXA INHIBITORS
Descriptor:Coagulation factor IX, N-[(1S,4S,7R)-2-(3-amino-4-chloro[1,2]oxazolo[5,4-c]pyridin-7-yl)-2-azabicyclo[2.2.1]heptan-7-yl]-2-chloro-4-(3-methyl-1H-1,2,4-triazol-1-yl)benzamide, SODIUM ION, ...
Authors:Sakurada, I., Endo, T., Hikita, K., Hirabayashi, T., Hosaka, Y., Kato, Y., Maeda, Y., Matsumoto, S., Mizuno, T., Nagasue, A., Nishimura, T., Shimada, S., Shinozaki, M., Taguchi, K., Takeuchi, K., Yokoyama, T., Hruza, A., Reichert, P., Zhang, T., Wood, H.B., Nakao, K., Furusako, S.
Deposit date:2016-10-14
Release date:2017-04-26
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Discovery of novel aminobenzisoxazole derivatives as orally available factor IXa inhibitors.
Bioorg. Med. Chem. Lett., 27, 2017
1KKO
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CRYSTAL STRUCTURE OF CITROBACTER AMALONATICUS METHYLASPARTATE AMMONIA LYASE
Descriptor:3-METHYLASPARTATE AMMONIA-LYASE, SULFATE ION
Authors:Levy, C.W., Buckley, P.A., Sedelnikova, S., Kato, Y., Asano, Y., Rice, D.W., Baker, P.J.
Deposit date:2001-12-10
Release date:2002-01-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:Insights into enzyme evolution revealed by the structure of methylaspartate ammonia lyase.
Structure, 10, 2002
1X25
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CRYSTAL STRUCTURE OF A MEMBER OF YJGF FAMILY FROM SULFOLOBUS TOKODAII (ST0811)
Descriptor:Hypothetical UPF0076 protein ST0811
Authors:Miyakawa, T., Lee, W.C., Hatano, K., Kato, Y., Sawano, Y., Miyazono, K., Nagata, K., Tanokura, M.
Deposit date:2005-04-20
Release date:2006-02-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the YjgF/YER057c/UK114 family protein from the hyperthermophilic archaeon Sulfolobus tokodaii strain 7
Proteins, 62, 2006
5GIR
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CRYSTAL STRUCTURE OF A FAB FRAGMENT WITH ITS LIGAND PEPTIDE
Descriptor:Heavy chain of Fab fragment, Light chain of Fab fragment, LYS-PRO-ILE-ILE-ILE-GLY-SER-HIS-ALA-TYR-GLY-ASP, ...
Authors:Kitago, Y., Kaneko, K.K., Ogasawara, S., Kato, Y., Takagi, J.
Deposit date:2016-06-24
Release date:2016-09-14
Last modified:2017-12-06
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Structural basis for multi-specific peptide recognition by the anti-IDH1/2 monoclonal antibody, MsMab-1.
Biochem. Biophys. Res. Commun., 478, 2016
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