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3U3G
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STRUCTURE OF LC11-RNASE H1 ISOLATED FROM COMPOST BY METAGENOMIC APPROACH: INSIGHT INTO THE STRUCTURAL BASES FOR UNUSUAL ENZYMATIC PROPERTIES OF STO-RNASE H1
Descriptor:Ribonuclease H, CHLORIDE ION, UNKNOWN LIGAND
Authors:Nguyen, T.N., Angkawidjaja, C., Kanaya, E., Koga, Y., Takano, K., Kanaya, S.
Deposit date:2011-10-05
Release date:2012-03-07
Last modified:2012-06-06
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Activity, stability, and structure of metagenome-derived LC11-RNase H1, a homolog of Sulfolobus tokodaii RNase H1
Protein Sci., 21, 2012
4H8K
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CRYSTAL STRUCTURE OF LC11-RNASE H1 IN COMPLEX WITH RNA/DNA HYBRID
Descriptor:Ribonuclease H, RNA (5'-R(*CP*GP*AP*CP*AP*CP*CP*UP*GP*AP*UP*UP*CP*C)-3'), DNA (5'-D(*GP*GP*AP*AP*TP*CP*AP*GP*GP*TP*GP*TP*CP*G)-3')
Authors:Nguyen, T.N., You, D.J., Matsumoto, H., Kanaya, E., Kanaya, S.
Deposit date:2012-09-23
Release date:2013-09-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of metagenome-derived LC11-RNase H1 in complex with RNA/DNA hybrid
J.Struct.Biol., 182, 2013
4IBN
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CRYSTAL STRUCTURE OF LC9-RNASE H1, A TYPE 1 RNASE H WITH THE TYPE 2 ACTIVE-SITE MOTIF
Descriptor:Ribonuclease H
Authors:Nguyen, T.-N., You, D.-J., Kanaya, E., Koga, Y., Kanaya, S.
Deposit date:2012-12-09
Release date:2013-03-20
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Crystal structure of metagenome-derived LC9-RNase H1 with atypical DEDN active site motif
Febs Lett., 587, 2013
1GOA
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COOPERATIVE STABILIZATION OF ESCHERICHIA COLI RIBONUCLEASE HI BY INSERTION OF GLY-80B AND GLY-77-> ALA SUBSTITUTION
Descriptor:RIBONUCLEASE H
Authors:Ishikawa, K., Kimura, S., Nakamura, H., Morikawa, K., Kanaya, S.
Deposit date:1993-05-10
Release date:1994-01-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Cooperative stabilization of Escherichia coli ribonuclease HI by insertion of Gly-80b and Gly-77-->Ala substitution.
Biochemistry, 32, 1993
1GOB
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COOPERATIVE STABILIZATION OF ESCHERICHIA COLI RIBONUCLEASE HI BY INSERTION OF GLY-80B AND GLY-77-> ALA SUBSTITUTION
Descriptor:RIBONUCLEASE H
Authors:Ishikawa, K., Kimura, S., Nakamura, H., Morikawa, K., Kanaya, S.
Deposit date:1993-05-10
Release date:1994-01-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Cooperative stabilization of Escherichia coli ribonuclease HI by insertion of Gly-80b and Gly-77-->Ala substitution.
Biochemistry, 32, 1993
1GOC
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COOPERATIVE STABILIZATION OF ESCHERICHIA COLI RIBONUCLEASE HI BY INSERTION OF GLY-80B AND GLY-77-> ALA SUBSTITUTION
Descriptor:RIBONUCLEASE H
Authors:Ishikawa, K., Kimura, S., Nakamura, H., Morikawa, K., Kanaya, S.
Deposit date:1993-05-10
Release date:1994-01-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Cooperative stabilization of Escherichia coli ribonuclease HI by insertion of Gly-80b and Gly-77-->Ala substitution.
Biochemistry, 32, 1993
1LAV
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STABILIZATION OF ESCHERICHIA COLI RIBONUCLEASE HI BY CAVITY-FILLING MUTATIONS WITHIN A HYDROPHOBIC CORE
Descriptor:RIBONUCLEASE H
Authors:Ishikawa, K., Nakamura, H., Morikawa, K., Kanaya, S.
Deposit date:1993-05-10
Release date:1993-10-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Stabilization of Escherichia coli ribonuclease HI by cavity-filling mutations within a hydrophobic core.
Biochemistry, 32, 1993
1LAW
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STABILIZATION OF ESCHERICHIA COLI RIBONUCLEASE HI BY CAVITY-FILLING MUTATIONS WITHIN A HYDROPHOBIC CORE
Descriptor:RIBONUCLEASE H
Authors:Ishikawa, K., Nakamura, H., Morikawa, K., Kanaya, S.
Deposit date:1993-05-10
Release date:1993-10-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Stabilization of Escherichia coli ribonuclease HI by cavity-filling mutations within a hydrophobic core.
Biochemistry, 32, 1993
1RBR
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STRUCTURAL STUDY OF MUTANTS OF ESCHERICHIA COLI RIBONUCLEASE HI WITH ENHANCED THERMOSTABILITY
Descriptor:RIBONUCLEASE H
Authors:Ishikawa, K., Kimura, S., Kanaya, S., Morikawa, K., Nakamura, H.
Deposit date:1993-02-16
Release date:1994-01-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural study of mutants of Escherichia coli ribonuclease HI with enhanced thermostability.
Protein Eng., 6, 1993
1RBS
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STRUCTURAL STUDY OF MUTANTS OF ESCHERICHIA COLI RIBONUCLEASE HI WITH ENHANCED THERMOSTABILITY
Descriptor:RIBONUCLEASE H
Authors:Ishikawa, K., Kimura, S., Kanaya, S., Morikawa, K., Nakamura, H.
Deposit date:1993-02-16
Release date:1994-01-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural study of mutants of Escherichia coli ribonuclease HI with enhanced thermostability.
Protein Eng., 6, 1993
1RBT
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STRUCTURAL STUDY OF MUTANTS OF ESCHERICHIA COLI RIBONUCLEASE HI WITH ENHANCED THERMOSTABILITY
Descriptor:RIBONUCLEASE H
Authors:Ishikawa, K., Kimura, S., Kanaya, S., Morikawa, K., Nakamura, H.
Deposit date:1993-02-16
Release date:1994-01-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural study of mutants of Escherichia coli ribonuclease HI with enhanced thermostability.
Protein Eng., 6, 1993
1RBU
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STRUCTURAL STUDY OF MUTANTS OF ESCHERICHIA COLI RIBONUCLEASE HI WITH ENHANCED THERMOSTABILITY
Descriptor:RIBONUCLEASE H
Authors:Ishikawa, K., Kimura, S., Kanaya, S., Morikawa, K., Nakamura, H.
Deposit date:1993-02-16
Release date:1994-01-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural study of mutants of Escherichia coli ribonuclease HI with enhanced thermostability.
Protein Eng., 6, 1993
1RBV
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STRUCTURAL STUDY OF MUTANTS OF ESCHERICHIA COLI RIBONUCLEASE HI WITH ENHANCED THERMOSTABILITY
Descriptor:RIBONUCLEASE H
Authors:Ishikawa, K., Kimura, S., Kanaya, S., Morikawa, K., Nakamura, H.
Deposit date:1993-02-16
Release date:1994-01-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural study of mutants of Escherichia coli ribonuclease HI with enhanced thermostability.
Protein Eng., 6, 1993
1KVA
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E. COLI RIBONUCLEASE HI D134A MUTANT
Descriptor:RIBONUCLEASE H
Authors:Kashiwagi, T., Jeanteur, D., Haruki, M., Katayanagi, K., Kanaya, S., Morikawa, K.
Deposit date:1996-10-04
Release date:1997-03-12
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Proposal for new catalytic roles for two invariant residues in Escherichia coli ribonuclease HI.
Protein Eng., 9, 1996
1KVB
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E. COLI RIBONUCLEASE HI D134H MUTANT
Descriptor:RIBONUCLEASE H
Authors:Kashiwagi, T., Jeanteur, D., Haruki, M., Katayanagi, K., Kanaya, S., Morikawa, K.
Deposit date:1996-10-04
Release date:1997-03-12
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Proposal for new catalytic roles for two invariant residues in Escherichia coli ribonuclease HI.
Protein Eng., 9, 1996
1KVC
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E. COLI RIBONUCLEASE HI D134N MUTANT
Descriptor:RIBONUCLEASE H
Authors:Kashiwagi, T., Jeanteur, D., Haruki, M., Katayanagi, K., Kanaya, S., Morikawa, K.
Deposit date:1996-10-04
Release date:1997-03-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Proposal for new catalytic roles for two invariant residues in Escherichia coli ribonuclease HI.
Protein Eng., 9, 1996
3VN5
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CRYSTAL STRUCTURE OF AQUIFEX AEOLICUS RNASE H3
Descriptor:Ribonuclease HIII
Authors:Jongruja, N., You, D.J., Eiko, K., Angkawidjaja, C., Koga, Y., Takano, K., Kanaya, S.
Deposit date:2011-12-22
Release date:2012-12-26
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Structure and characterization of RNase H3 from Aquifex aeolicus
Febs J., 279, 2012
3WX5
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CRYSTAL STRUCTURE OF METAGENOME-DERIVED GLYCOSIDE HYDROLASE FAMILY 12 ENDOGLUCANASE
Descriptor:Cellulase
Authors:Okano, H., Angkawidjaja, C., Kanaya, S.
Deposit date:2014-07-17
Release date:2014-11-12
Last modified:2015-01-21
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure and stability of metagenome-derived glycoside hydrolase family 12 cellulase (LC-CelA) a homolog of Cel12A from Rhodothermus marinus
FEBS Open Bio, 4, 2014
3WYD
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C-TERMINAL ESTERASE DOMAIN OF LC-EST1
Descriptor:LC-Est1C
Authors:Okano, H., Hong, X., Angkawidjaja, C., Kanaya, S.
Deposit date:2014-08-26
Release date:2014-11-12
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Structural and biochemical characterization of a metagenome-derived esterase with a long N-terminal extension
Protein Sci., 2014
3X17
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CRYSTAL STRUCTURE OF METAGENOME-DERIVED GLYCOSIDE HYDROLASE FAMILY 9 ENDOGLUCANASE
Descriptor:Endoglucanase, ZINC ION, CALCIUM ION
Authors:Okano, H., Angkawidjaja, C., Kanaya, S.
Deposit date:2014-10-30
Release date:2015-01-21
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structure, activity and stability of metagenome-derived glycoside hydrolase family 9 endoglucanase with an N-terminal Ig-like domain
Protein Sci., 2014
1RIL
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CRYSTAL STRUCTURE OF RIBONUCLEASE H FROM THERMUS THERMOPHILUS HB8 REFINED AT 2.8 ANGSTROMS RESOLUTION
Descriptor:RIBONUCLEASE H
Authors:Ishikawa, K., Okumura, M., Katayanagi, K., Kimura, S., Kanaya, S., Nakamura, H., Morikawa, K.
Deposit date:1993-01-14
Release date:1993-10-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of ribonuclease H from Thermus thermophilus HB8 refined at 2.8 A resolution.
J.Mol.Biol., 230, 1993
2RN2
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STRUCTURAL DETAILS OF RIBONUCLEASE H FROM ESCHERICHIA COLI AS REFINED TO AN ATOMIC RESOLUTION
Descriptor:RIBONUCLEASE H
Authors:Katayanagi, K., Miyagawa, M., Matsushima, M., Ishikawa, M., Kanaya, S., Nakamura, H., Ikehara, M., Matsuzaki, T., Morikawa, K.
Deposit date:1992-04-15
Release date:1993-10-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Structural details of ribonuclease H from Escherichia coli as refined to an atomic resolution.
J.Mol.Biol., 223, 1992
1X1P
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CRYSTAL STRUCTURE OF TK-RNASE HII(1-197)-A(28-42)
Descriptor:Ribonuclease HII
Authors:Takano, K., Endo, S., Mukaiyama, A., Chon, H., Matsumura, H., Koga, Y., Kanaya, S.
Deposit date:2005-04-11
Release date:2006-01-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of amyloid beta fragments in aqueous environments
Febs J., 273, 2006
2E1P
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CRYSTAL STRUCTURE OF PRO-TK-SUBTILISIN
Descriptor:Tk-subtilisin, CALCIUM ION
Authors:Tanaka, S., Saito, K., Chon, H., Matsumura, H., Koga, Y., Takano, K., Kanaya, S.
Deposit date:2006-10-27
Release date:2007-01-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of unautoprocessed precursor of subtilisin from a hyperthermophilic archaeon: evidence for Ca2+-induced folding
J.Biol.Chem., 282, 2007
2Z1G
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CRYSTAL STRUCTURE OF E.COLI RNASE HI SURFACE CHARGED MUTANT(Q4R/T40E/Q72H/Q76K/Q80E/T92K/Q105K)
Descriptor:Ribonuclease HI
Authors:You, D.J., Fukuchi, S., Nishikawa, K., Koga, Y., Takano, K., Kanaya, S.
Deposit date:2007-05-08
Release date:2007-11-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Protein Thermostabilization Requires a Fine-tuned Placement of Surface-charged Residues
J.Biochem.(Tokyo), 142, 2007