Author results

2CDV
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REFINED STRUCTURE OF CYTOCHROME C3 AT 1.8 ANGSTROMS RESOLUTION
Descriptor:CYTOCHROME C3, PROTOPORPHYRIN IX CONTAINING FE
Authors:Higuchi, Y., Kusunoki, M., Matsuura, Y., Yasuoka, N., Kakudo, M.
Deposit date:1983-11-15
Release date:1984-02-02
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Refined structure of cytochrome c3 at 1.8 A resolution
J.Mol.Biol., 172, 1984
1H2A
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SINGLE CRYSTALS OF HYDROGENASE FROM DESULFOVIBRIO VULGARIS
Descriptor:HYDROGENASE, IRON/SULFUR CLUSTER, FE3-S4 CLUSTER, ...
Authors:Higuchi, Y., Yasuoka, N.
Deposit date:1997-10-17
Release date:1999-02-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Unusual ligand structure in Ni-Fe active center and an additional Mg site in hydrogenase revealed by high resolution X-ray structure analysis.
Structure, 5, 1997
1H2R
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THREE-DIMENSIONAL STRUCTURE OF NI-FE HYDROGENASE FROM DESULFIVIBRIO VULGARIS MIYAZAKI F IN THE REDUCED FORM AT 1.4 A RESOLUTION
Descriptor:PROTEIN (PERIPLASMIC [NIFE] HYDROGENASE SMALL SUBUNIT), PROTEIN (PERIPLASMIC [NIFE] HYDROGENASE LARGE SUBUNIT), IRON/SULFUR CLUSTER, ...
Authors:Higuchi, Y., Ogata, H.
Deposit date:1999-06-14
Release date:2000-01-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Removal of the bridging ligand atom at the Ni-Fe active site of [NiFe] hydrogenase upon reduction with H2, as revealed by X-ray structure analysis at 1.4 A resolution.
Structure Fold.Des., 7, 1999
1VEJ
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SOLUTION STRUCTURE OF RSGI RUH-016, A UBA DOMAIN FROM MOUSE CDNA
Descriptor:RIKEN cDNA 4931431F19
Authors:Higuchi, Y., Abe, T., Hirota, H., Hayashi, F., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-03-31
Release date:2005-05-31
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution Structure of RSGI RUH-016, a UBA Domain from mouse cDNA
To be Published
1VEK
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SOLUTION STRUCTURE OF RSGI RUH-011, A UBA DOMAIN FROM ARABIDOPSIS CDNA
Descriptor:ubiquitin-specific protease 14, putative
Authors:Higuchi, Y., Abe, T., Hirota, H., Saito, K., Koshiba, S., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-03-31
Release date:2004-09-30
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution Structure of RSGI RUH-011, a UBA Domain from Arabidopsis cDNA
To be Published
1WIV
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SOLUTION STRUCTURE OF RSGI RUH-023, A UBA DOMAIN FROM ARABIDOPSIS CDNA
Descriptor:ubiquitin-specific protease 14
Authors:Higuchi, Y., Abe, T., Hirota, H., Izumi, K., Yoshida, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-28
Release date:2004-11-28
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:solution structure of RSGI RUH-023, a UBA domain from Arabidopsis cDNA
To be Published
2EWI
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THE F20Y MUTANT OF TETRAHEME CYTOCHROME C3 FROM DESULFOVIBRIO VULGARIS MIYAZAKI F
Descriptor:Cytochrome c3, PROTOPORPHYRIN IX CONTAINING FE
Authors:Higuchi, Y., Komori, H., Morita, K.
Deposit date:2005-11-03
Release date:2006-11-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1 Å)
Cite:The F20Y mutant of tetraheme cytochrome c3 from Desulfovibrio Vulgaris
To be Published
2EWU
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THE F20H MUTANT OF TETRAHEME CYTOCHROME C3 FROM DESULFOVIBRIO VULGARIS MIYAZAKI F
Descriptor:Cytochrome c3, PROTOPORPHYRIN IX CONTAINING FE
Authors:Higuchi, Y., Komori, H., Morita, K.
Deposit date:2005-11-07
Release date:2006-11-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:The F20H mutant of tetraheme cytochrome c3 from Desulfovibrio Vulgaris Miyazaki F
To be Published
1RDV
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RUBREDOXIN FROM DESULFOVIBRIO VULGARIS MIYAZAKI F, TRIGONAL CRYSTAL FORM
Descriptor:RUBREDOXIN, FE (III) ION
Authors:Higuchi, Y., Yasuoka, N.
Deposit date:1998-09-30
Release date:1999-05-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure determination of rubredoxin from Desulfovibrio vulgaris Miyazaki F in two crystal forms.
Acta Crystallogr.,Sect.D, 55, 1999
2RDV
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RUBREDOXIN FROM DESULFOVIBRIO VULGARIS MIYAZAKI F, MONOCLINIC CRYSTAL FORM
Descriptor:RUBREDOXIN, FE (III) ION
Authors:Higuchi, Y., Yasuoka, N.
Deposit date:1998-10-07
Release date:1999-05-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure determination of rubredoxin from Desulfovibrio vulgaris Miyazaki F in two crystal forms.
Acta Crystallogr.,Sect.D, 55, 1999
2YXV
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THE DELETION MUTANT OF MULTICOPPER OXIDASE CUEO
Descriptor:Blue copper oxidase cueO, COPPER (II) ION, NITRATE ION, ...
Authors:Higuchi, Y., Komori, H.
Deposit date:2007-04-27
Release date:2008-01-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Structure and function of the engineered multicopper oxidase CueO from Escherichia coli--deletion of the methionine-rich helical region covering the substrate-binding site
J.Mol.Biol., 373, 2007
2YXW
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THE DELETION MUTANT OF MULTICOPPER OXIDASE CUEO
Descriptor:Blue copper oxidase cueO, COPPER (II) ION, NITRATE ION, ...
Authors:Higuchi, Y., Komori, H.
Deposit date:2007-04-27
Release date:2008-01-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure and function of the engineered multicopper oxidase CueO from Escherichia coli--deletion of the methionine-rich helical region covering the substrate-binding site
J.Mol.Biol., 373, 2007
5AX7
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YEAST PYRUVYLTRANSFERASE PVG1P
Descriptor:Pyruvyl transferase 1, ZINC ION
Authors:Kanekiyo, M., Yoritsune, K., Yoshinaga, S., Higuchi, Y., Takegawa, K., Kakuta, Y.
Deposit date:2015-07-16
Release date:2016-06-08
Method:X-RAY DIFFRACTION (2.46 Å)
Cite:A rationally engineered yeast pyruvyltransferase Pvg1p introduces sialylation-like properties in neo-human-type complex oligosaccharide
Sci Rep, 6, 2016
2EWK
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THE T24V MUTANT OF TETRAHEME CYTOCHROME C3 FROM DESULFOVIBRIO VULGARIS MIYAZAKI F
Descriptor:Cytochrome c3, PROTOPORPHYRIN IX CONTAINING FE
Authors:Higuchi, Y., Komori, H., Morita, K.
Deposit date:2005-11-03
Release date:2006-11-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1 Å)
Cite:Strategic roles of axial histidines in structure formation and redox regulation of tetraheme cytochrome c3.
Biochemistry, 47, 2008
2FFN
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THE E41Q MUTANT OF TETRAHEME CYTOCHROME C3 FROM DESULFOVIBRIO VULGARIS MIYAZAKI F
Descriptor:Cytochrome c3, PROTOPORPHYRIN IX CONTAINING FE
Authors:Higuchi, Y., Komori, H., Morita, K.
Deposit date:2005-12-20
Release date:2006-12-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Roles of charged residues in pH-dependent redox properties of cytochrome c3 from Desulfovibrio vulgaris Miyazaki F
BIOPHYSICS(BSJ), 2, 2006
2YXC
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THE H25M MUTANT OF TETRAHEME CYTOCHROME C3 FROM DESULFOVIBRIO VULGARIS MIYAZAKI F
Descriptor:Cytochrome c3, PROTOPORPHYRIN IX CONTAINING FE
Authors:Higuchi, Y., Komori, H.
Deposit date:2007-04-26
Release date:2008-04-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Strategic roles of axial histidines in structure formation and redox regulation of tetraheme cytochrome c3.
Biochemistry, 47, 2008
2YYW
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THE F20M MUTANT OF TETRAHEME CYTOCHROME C3 FROM DESULFOVIBRIO VULGARIS MIYAZAKI F
Descriptor:Cytochrome c3, PROTOPORPHYRIN IX CONTAINING FE
Authors:Higuchi, Y., Komori, H.
Deposit date:2007-05-02
Release date:2008-05-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:Structures of Noncoordinated Aromatic Residue Mutants in Tetraheme Cytochrome c3 from Desulfovibrio vulgaris Miyazaki F
To be Published
2YYX
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THE Y65A MUTANT OF TETRAHEME CYTOCHROME C3 FROM DESULFOVIBRIO VULGARIS MIYAZAKI F
Descriptor:Cytochrome c3, PROTOPORPHYRIN IX CONTAINING FE
Authors:Higuchi, Y., Komori, H.
Deposit date:2007-05-02
Release date:2008-05-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1 Å)
Cite:Structures of Noncoordinated Aromatic Residue Mutants in Tetraheme Cytochrome c3 from Desulfovibrio vulgaris Miyazaki F
To be Published
2Z47
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THE Y66L MUTANT OF TETRAHEME CYTOCHROME C3 FROM DESULFOVIBRIO VULGARIS MIYAZAKI F
Descriptor:Cytochrome c3, HEME C
Authors:Higuchi, Y., Komori, H.
Deposit date:2007-06-13
Release date:2008-06-17
Last modified:2019-10-02
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structures of Noncoordinated Aromatic Residue Mutants in Tetraheme Cytochrome c3 from Desulfovibrio vulgaris Miyazaki F
To be Published
2FMY
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CO-DEPENDENT TRANSCRIPTION FACTOR COOA FROM CARBOXYDOTHERMUS HYDROGENOFORMANS (IMIDAZOLE-BOUND FORM)
Descriptor:carbon monoxide oxidation system transcription regulator CooA-1, PROTOPORPHYRIN IX CONTAINING FE, IMIDAZOLE
Authors:Higuchi, Y., Komori, H.
Deposit date:2006-01-10
Release date:2007-01-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of CO-sensing Transcription Activator CooA Bound to Exogenous Ligand Imidazole
J.Mol.Biol., 367, 2007
5YHS
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PYRUVYLATED BETA-D-GALACTOSIDASE FROM BACILLUS SP. HMA207, APO FORM
Descriptor:Pyruvylated beta-D-galactosidase
Authors:Tanuma, M., Yamada, C., Arakawa, T., Higuchi, Y., Takegawa, K., Fushinobu, S.
Deposit date:2017-09-29
Release date:2018-08-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Identification and characterization of a novel beta-D-galactosidase that releases pyruvylated galactose.
Sci Rep, 8, 2018
5YIF
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PYRUVYLATED BETA-D-GALACTOSIDASE FROM BACILLUS SP. HMA207, E163A MUTANT PYRUVYLATED BETA-D-GALACTOSE COMPLEX
Descriptor:Pyruvylated beta-D-galactosidase, (2R,4aR,6R,7R,8R,8aR)-2-methyl-6,7,8-tris(oxidanyl)-4,4a,6,7,8,8a-hexahydropyrano[3,2-d][1,3]dioxine-2-carboxylic acid
Authors:Tanuma, M., Yamada, C., Arakawa, T., Higuchi, Y., Takegawa, K., Fushinobu, S.
Deposit date:2017-10-04
Release date:2018-08-29
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Identification and characterization of a novel beta-D-galactosidase that releases pyruvylated galactose.
Sci Rep, 8, 2018
1C53
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S-CLASS CYTOCHROMES C HAVE A VARIETY OF FOLDING PATTERNS: STRUCTURE OF CYTOCHROME C-553 FROM DESULFOVIBRIO VULGARIS DETERMINED BY THE MULTI-WAVELENGTH ANOMALOUS DISPERSION METHOD
Descriptor:CYTOCHROME C553, PROTOPORPHYRIN IX CONTAINING FE
Authors:Nakagawa, A., Higuchi, Y., Yasuoka, N., Katsube, Y., Yaga, T.
Deposit date:1991-08-26
Release date:1993-10-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:S-class cytochromes c have a variety of folding patterns: structure of cytochrome c-553 from Desulfovibrio vulgaris determined by the multi-wavelength anomalous dispersion method.
J.Biochem.(Tokyo), 108, 1990
1NBB
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N-BUTYLISOCYANIDE BOUND RHODOBACTER CAPSULATUS CYTOCHROME C'
Descriptor:CYTOCHROME C', PROTOPORPHYRIN IX CONTAINING FE, N-BUTYL ISOCYANIDE
Authors:Tahirov, T.H., Misaki, S., Meyer, T.E., Cusanovich, M.A., Higuchi, Y., Yasuoka, N.
Deposit date:1996-03-18
Release date:1996-08-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Concerted movement of side chains in the haem vicinity observed on ligand binding in cytochrome c' from rhodobacter capsulatus.
Nat.Struct.Biol., 3, 1996
1WQ2
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NEUTRON CRYSTAL STRUCTURE OF DISSIMILATORY SULFITE REDUCTASE D (DSRD)
Descriptor:Protein dsvD, SULFATE ION
Authors:Chatake, T., Mizuno, N., Voordouw, G., Higuchi, Y., Arai, S., Tanaka, I., Niimura, N.
Deposit date:2004-09-19
Release date:2005-09-19
Last modified:2018-03-07
Method:NEUTRON DIFFRACTION (2.4 Å)
Cite:Crystallization and preliminary neutron analysis of the dissimilatory sulfite reductase D (DsrD) protein from the sulfate-reducing bacterium Desulfovibrio vulgaris.
Acta Crystallogr.,Sect.D, 59, 2003