Author results

1XER
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STRUCTURE OF FERREDOXIN
Descriptor:FERREDOXIN, ZINC ION, FE3-S4 CLUSTER
Authors:Fujii, T., Hata, Y., Moriyama, H., Wakagi, T., Tanaka, N., Oshima, T.
Deposit date:1996-08-28
Release date:1997-09-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Novel zinc-binding centre in thermoacidophilic archaeal ferredoxins.
Nat.Struct.Biol., 3, 1996
1C0N
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CSDB PROTEIN, NIFS HOMOLOGUE
Descriptor:PROTEIN (CSDB PROTEIN), PYRIDOXAL-5'-PHOSPHATE, ACETIC ACID
Authors:Fujii, T., Maeda, M., Mihara, H., Kurihara, T., Esaki, N., Hata, Y.
Deposit date:1999-07-17
Release date:2000-07-17
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of a NifS homologue: X-ray structure analysis of CsdB, an Escherichia coli counterpart of mammalian selenocysteine lyase
Biochemistry, 39, 2000
3W5S
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CRYSTAL STRUCTURE OF MALEYLACETATE REDUCTASE FROM RHIZOBIUM SP. STRAIN MTP-10005
Descriptor:Maleylacetate reductase, SULFATE ION, BENZAMIDINE, ...
Authors:Fujii, T., Ogawa, A., Goda, Y., Yamauchi, T., Yoshida, M., Oikawa, T., Hata, Y.
Deposit date:2013-02-06
Release date:2014-02-12
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Crystal Structure of Maleylacetate Reductase from Rhizobium sp. strain MTP-10005
To be Published
3A69
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ATOMIC MODEL OF THE BACTERIAL FLAGELLAR HOOK BASED ON DOCKING AN X-RAY DERIVED STRUCTURE AND TERMINAL TWO ALPHA-HELICES INTO AN 7.1 ANGSTROM RESOLUTION CRYOEM MAP
Descriptor:Flagellar hook protein flgE
Authors:Fujii, T., Kato, T., Namba, K.
Deposit date:2009-08-26
Release date:2009-12-15
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (7.1 Å)
Cite:Specific arrangement of alpha-helical coiled coils in the core domain of the bacterial flagellar hook for the universal joint function
Structure, 17, 2009
3J0R
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MODEL OF A TYPE III SECRETION SYSTEM NEEDLE BASED ON A 7 ANGSTROM RESOLUTION CRYOEM MAP
Descriptor:Protein mxiH
Authors:Fujii, T., Cheung, M., Blanco, A., Kato, T., Blocker, A.J., Namba, K.
Deposit date:2011-11-03
Release date:2012-02-29
Last modified:2012-04-04
Method:ELECTRON MICROSCOPY (7.7 Å)
Cite:Structure of a type III secretion needle at 7-A resolution provides insights into its assembly and signaling mechanisms.
Proc.Natl.Acad.Sci.USA, 109, 2012
3MFP
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ATOMIC MODEL OF F-ACTIN BASED ON A 6.6 ANGSTROM RESOLUTION CRYOEM MAP
Descriptor:Actin, alpha skeletal muscle, ADENOSINE-5'-DIPHOSPHATE
Authors:Fujii, T., Iwane, A.H., Yanagida, T., Namba, K.
Deposit date:2010-04-03
Release date:2010-09-29
Last modified:2014-02-19
Method:ELECTRON MICROSCOPY (6.6 Å)
Cite:Direct visualization of secondary structures of F-actin by electron cryomicroscopy
Nature, 467, 2010
5WRH
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FLGG STRUCTURE BASED ON THE CRYOEM MAP OF THE BACTERIAL FLAGELLAR POLYROD
Descriptor:Flagellar basal-body rod protein FlgG
Authors:Fujii, T., Namba, K.
Deposit date:2016-12-02
Release date:2017-02-08
Method:ELECTRON MICROSCOPY (7.4 Å)
Cite:Identical folds used for distinct mechanical functions of the bacterial flagellar rod and hook.
Nat Commun, 8, 2017
1J3U
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CRYSTAL STRUCTURE OF ASPARTASE FROM BACILLUS SP. YM55-1
Descriptor:aspartase
Authors:Fujii, T., Sakai, H., Kawata, Y., Hata, Y.
Deposit date:2003-02-16
Release date:2003-05-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of Thermostable Aspartase from Bacillus sp. YM55-1: Structure-based Exploration of Functional Sites in the Aspartase Family
J.Mol.Biol., 328, 2003
1UHA
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CRYSTAL STRUCTURE OF POKEWEED LECTIN-D2
Descriptor:lectin-D2, CALCIUM ION
Authors:Fujii, T., Hayashida, M., Hamasu, M., Ishiguro, M., Hata, Y.
Deposit date:2003-06-27
Release date:2004-04-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structures of two lectins from the roots of pokeweed (Phytolacca americana).
Acta Crystallogr.,Sect.D, 60, 2004
1ULN
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CRYSTAL STRUCTURE OF POKEWEED LECTIN-D1
Descriptor:lectin-D
Authors:Fujii, T., Hayashida, M., Hamasu, M., Ishiguro, M., Hata, Y.
Deposit date:2003-09-16
Release date:2004-04-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structures of two lectins from the roots of pokeweed (Phytolacca americana).
Acta Crystallogr.,Sect.D, 60, 2004
5H53
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THE STRUCTURE OF RABBIT SKELETAL MUSCLE ACTOMYOSIN RIGOR COMPLEX AT 5.2 ANGSTROM.
Descriptor:Skeletal muscle myosin heavy chain MyHC-EO/IIL, Myosin regulatory light chain 2, skeletal muscle isoform type 1, ...
Authors:Fujii, T., Namba, K.
Deposit date:2016-11-04
Release date:2017-01-18
Last modified:2017-01-25
Method:ELECTRON MICROSCOPY (5.2 Å)
Cite:Structure of actomyosin rigour complex at 5.2 angstrom resolution and insights into the ATPase cycle mechanism
Nat Commun, 8, 2017
2Z36
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CRYSTAL STRUCTURE OF CYTOCHROME P450 MOXA FROM NONOMURAEA RECTICATENA (CYP105)
Descriptor:Cytochrome P450 type compactin 3'',4''-hydroxylase, FE (III) ION, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Yasutake, Y., Fujii, Y., Fujii, T., Arisawa, A., Tamura, T.
Deposit date:2007-06-02
Release date:2007-08-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of cytochrome P450 MoxA from Nonomuraea recticatena (CYP105)
Biochem.Biophys.Res.Commun., 361, 2007
1I29
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CRYSTAL STRUCTURE OF CSDB COMPLEXED WITH L-PROPARGYLGLYCINE
Descriptor:CSDB, L-PROPARGYLGLYCINE, PYRIDOXAL-5'-PHOSPHATE
Authors:Mihara, H., Fujii, T., Kurihara, T., Hata, Y., Esaki, N.
Deposit date:2001-02-07
Release date:2003-07-01
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of external aldimine of Escherichia coli CsdB, an IscS/NifS homolog: implications for its specificity toward selenocysteine.
J.BIOCHEM.(TOKYO), 131, 2002
1JUD
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L-2-HALOACID DEHALOGENASE
Descriptor:L-2-HALOACID DEHALOGENASE
Authors:Hisano, T., Hata, Y., Fujii, T., Liu, J.-Q., Kurihara, T., Esaki, N., Soda, K.
Deposit date:1996-06-03
Release date:1996-12-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of L-2-haloacid dehalogenase from Pseudomonas sp. YL. An alpha/beta hydrolase structure that is different from the alpha/beta hydrolase fold.
J.Biol.Chem., 271, 1996
1QH9
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ENZYME-PRODUCT COMPLEX OF L-2-HALOACID DEHALOGENASE
Descriptor:2-HALOACID DEHALOGENASE, LACTIC ACID
Authors:Li, Y.-F., Hata, Y., Fujii, T., Kurihara, T., Esaki, N.
Deposit date:1999-05-12
Release date:2000-05-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The Structure of L-2-Haloacid Dehalogenase Complexed with a Reaction Product Reveals the Mechanism of Intermediate Hydrolysis in Dehalogenase
To be Published
1AKL
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ALKALINE PROTEASE FROM PSEUDOMONAS AERUGINOSA IFO3080
Descriptor:ALKALINE PROTEASE, ZINC ION, CALCIUM ION
Authors:Miyatake, H., Hata, Y., Fujii, T., Hamada, K., Morihara, K., Katsube, Y.
Deposit date:1995-09-16
Release date:1996-03-08
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the unliganded alkaline protease from Pseudomonas aeruginosa IFO3080 and its conformational changes on ligand binding.
J.Biochem.(Tokyo), 118, 1995
1IEI
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CRYSTAL STRUCTURE OF HUMAN ALDOSE REDUCTASE COMPLEXED WITH THE INHIBITOR ZENARESTAT.
Descriptor:ALDOSE REDUCTASE, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, [3-(4-BROMO-2-FLUORO-BENZYL)-7-CHLORO-2,4-DIOXO-3,4-DIHYDRO-2H-QUINAZOLIN-1-YL]-ACETIC ACID
Authors:Kinoshita, T., Miyake, H., Fujii, T., Takakura, S., Goto, T.
Deposit date:2001-04-09
Release date:2002-04-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The structure of human recombinant aldose reductase complexed with the potent inhibitor zenarestat.
Acta Crystallogr.,Sect.D, 58, 2002
1ZRM
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CRYSTAL STRUCTURE OF THE REACTION INTERMEDIATE OF L-2-HALOACID DEHALOGENASE WITH 2-CHLORO-N-BUTYRATE
Descriptor:L-2-HALOACID DEHALOGENASE, BUTANOIC ACID
Authors:Li, Y.-F., Hata, Y., Fujii, T., Hisano, T., Nishihara, M., Kurihara, T., Esaki, N.
Deposit date:1998-03-03
Release date:1999-03-23
Last modified:2018-03-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of reaction intermediates of L-2-haloacid dehalogenase and implications for the reaction mechanism.
J.Biol.Chem., 273, 1998
1ZRN
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INTERMEDIATE STRUCTURE OF L-2-HALOACID DEHALOGENASE WITH MONOCHLOROACETATE
Descriptor:L-2-HALOACID DEHALOGENASE, ACETIC ACID
Authors:Li, Y.-F., Hata, Y., Fujii, T., Hisano, T., Nishihara, M., Kurihara, T., Esaki, N.
Deposit date:1998-03-03
Release date:1999-03-23
Last modified:2018-03-14
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Crystal structures of reaction intermediates of L-2-haloacid dehalogenase and implications for the reaction mechanism.
J.Biol.Chem., 273, 1998
3J6P
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PSEUDO-ATOMIC MODEL OF DYNEIN MICROTUBULE BINDING DOMAIN-TUBULIN COMPLEX BASED ON A CRYOEM MAP
Descriptor:Dynein heavy chain, cytoplasmic, Tubulin alpha-1A chain, ...
Authors:Uchimura, S., Fujii, T., Takazaki, H., Ayukawa, R., Nishikawa, Y., Minoura, I., Hachikubo, Y., Kurisu, G., Sutoh, K., Kon, T., Namba, K., Muto, E.
Deposit date:2014-03-20
Release date:2014-12-31
Last modified:2015-04-08
Method:ELECTRON MICROSCOPY (8.2 Å)
Cite:A flipped ion pair at the dynein-microtubule interface is critical for dynein motility and ATPase activation
J.Cell Biol., 208, 2015
5XDH
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HIS/DOPA LIGATED CYTOCHROME C FROM AN ANAMMOX ORGANISM KSU-1
Descriptor:Putative cytochrome c, PROTOPORPHYRIN IX CONTAINING FE, ACETATE ION, ...
Authors:Hira, D., Kitamura, R., Nakamura, T., Yamagata, Y., Furukawa, K., Fujii, T.
Deposit date:2017-03-28
Release date:2018-03-28
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:Anammox Organism KSU-1 Expresses a Novel His/DOPA Ligated Cytochrome c.
J. Mol. Biol., 430, 2018
1ULK
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CRYSTAL STRUCTURE OF POKEWEED LECTIN-C
Descriptor:lectin-C
Authors:Hayashida, M., Fujii, T., Ishiguro, M., Hata, Y.
Deposit date:2003-09-12
Release date:2003-12-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Similarity between protein-protein and protein-carbohydrate interactions, revealed by two crystal structures of lectins from the roots of pokeweed.
J.Mol.Biol., 334, 2003
1ULM
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CRYSTAL STRUCTURE OF POKEWEED LECTIN-D2 COMPLEXED WITH TRI-N-ACETYLCHITOTRIOSE
Descriptor:lectin-D2, N-ACETYL-D-GLUCOSAMINE
Authors:Hayashida, M., Fujii, T., Ishiguro, M., Hata, Y.
Deposit date:2003-09-12
Release date:2003-12-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Similarity between protein-protein and protein-carbohydrate interactions, revealed by two crystal structures of lectins from the roots of pokeweed.
J.Mol.Biol., 334, 2003
1WPX
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CRYSTAL STRUCTURE OF CARBOXYPEPTIDASE Y INHIBITOR COMPLEXED WITH THE COGNATE PROTEINASE
Descriptor:Carboxypeptidase Y, Carboxypeptidase Y inhibitor, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Mima, J., Hayashida, M., Fujii, T., Narita, Y., Hayashi, R., Ueda, M., Hata, Y.
Deposit date:2004-09-14
Release date:2005-03-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of the carboxypeptidase y inhibitor i(c) in complex with the cognate proteinase reveals a novel mode of the proteinase-protein inhibitor interaction
J.Mol.Biol., 346, 2005
3J82
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ELECTRON CRYO-MICROSCOPY OF DNGR-1 IN COMPLEX WITH F-ACTIN
Descriptor:C-type lectin domain family 9 member A, Actin, cytoplasmic 1, ...
Authors:Hanc, P., Fujii, T., Yamada, Y., Huotari, J., Schulz, O., Ahrens, S., Kjaer, S., Way, M., Namba, K., Reis e Sousa, C.
Deposit date:2014-09-25
Release date:2015-05-20
Last modified:2015-05-27
Method:ELECTRON MICROSCOPY (7.7 Å)
Cite:Structure of the Complex of F-Actin and DNGR-1, a C-Type Lectin Receptor Involved in Dendritic Cell Cross-Presentation of Dead Cell-Associated Antigens
Immunity, 42, 2015
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