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9FFH
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BU of 9ffh by Molmil
Native capsid of Rhodobacter microvirus Ebor computed with I4 symmetry
Descriptor: Major capsid protein
Authors:Bardy, P, MacDonald, C.I.W, Jenkins, H.T, Chechik, M, Hart, S.J, Turkenburg, J.P, Blaza, J.N, Fogg, P.C.M, Antson, A.A.
Deposit date:2024-05-23
Release date:2024-06-12
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:A stargate mechanism of Microviridae genome delivery unveiled by cryogenic electron tomography.
Biorxiv, 2024
9FFG
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BU of 9ffg by Molmil
Empty capsid of Rhodobacter microvirus Ebor computed with I4 symmetry
Descriptor: Major capsid protein
Authors:Bardy, P, MacDonald, C.I.W, Jenkins, H.T, Byrom, L, Chechik, M, Hart, S.J, Turkenburg, J.P, Blaza, J.N, Fogg, P.C.M, Antson, A.A.
Deposit date:2024-05-23
Release date:2024-06-12
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:A stargate mechanism of Microviridae genome delivery unveiled by cryogenic electron tomography.
Biorxiv, 2024
6TEH
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BU of 6teh by Molmil
Baseplate of native GTA particle computed with C3 symmetry
Descriptor: IRON/SULFUR CLUSTER, Putative gene transfer agent protein
Authors:Bardy, P, Fuzik, T, Hrebik, D, Pantucek, R, Beatty, J.T, Plevka, P.
Deposit date:2019-11-12
Release date:2020-07-22
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.99 Å)
Cite:Structure and mechanism of DNA delivery of a gene transfer agent.
Nat Commun, 11, 2020
6TEA
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BU of 6tea by Molmil
Tail of native GTA particle computed with helical refinement, C6 symmetry
Descriptor: Phage major tail protein, TP901-1 family
Authors:Bardy, P, Fuzik, T, Hrebik, D, Pantucek, R, Beatty, J.T, Plevka, P.
Deposit date:2019-11-11
Release date:2020-07-22
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.89 Å)
Cite:Structure and mechanism of DNA delivery of a gene transfer agent.
Nat Commun, 11, 2020
6TO8
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BU of 6to8 by Molmil
Neck of empty GTA particle computed with C12 symmetry
Descriptor: Adaptor protein Rcc01688, Portal protein Rcc01684
Authors:Bardy, P, Fuzik, T, Hrebik, D, Pantucek, R, Beatty, J.T, Plevka, P.
Deposit date:2019-12-11
Release date:2020-07-22
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.36 Å)
Cite:Structure and mechanism of DNA delivery of a gene transfer agent.
Nat Commun, 11, 2020
6TB9
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BU of 6tb9 by Molmil
Capsid of native GTA particle computed with C5 symmetry
Descriptor: Head spike base Rcc01079, Head spike fiber Rcc01080, Major capsid protein Rcc01687
Authors:Bardy, P, Fuzik, T, Hrebik, D, Pantucek, R, Beatty, J.T, Plevka, P.
Deposit date:2019-11-01
Release date:2020-07-22
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.56 Å)
Cite:Structure and mechanism of DNA delivery of a gene transfer agent.
Nat Commun, 11, 2020
6TSU
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BU of 6tsu by Molmil
Capsid of empty GTA particle computed with C5 symmetry
Descriptor: Major capsid protein Rcc01687, Uncharacterized protein
Authors:Bardy, P, Fuzik, T, Hrebik, D, Pantucek, R, Beatty, J.T, Plevka, P.
Deposit date:2019-12-21
Release date:2020-07-22
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.42 Å)
Cite:Structure and mechanism of DNA delivery of a gene transfer agent.
Nat Commun, 11, 2020
6TSV
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BU of 6tsv by Molmil
Tail of empty GTA particle computed with helical refinement, C6 symmetry
Descriptor: Tail tube protein Rcc01691
Authors:Bardy, P, Fuzik, T, Hrebik, D, Pantucek, R, Beatty, J.T, Plevka, P.
Deposit date:2019-12-21
Release date:2020-07-22
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.78 Å)
Cite:Structure and mechanism of DNA delivery of a gene transfer agent.
Nat Commun, 11, 2020
6TSW
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BU of 6tsw by Molmil
Isometric capsid of empty GTA particle computed with I4(I,n25r) symmetry
Descriptor: Major capsid protein Rcc01687
Authors:Bardy, P, Fuzik, T, Hrebik, D, Pantucek, R, Beatty, J.T, Plevka, P.
Deposit date:2019-12-21
Release date:2020-07-22
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (4.03 Å)
Cite:Structure and mechanism of DNA delivery of a gene transfer agent.
Nat Commun, 11, 2020
6TBA
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BU of 6tba by Molmil
Virion of native gene transfer agent (GTA) particle
Descriptor: IRON/SULFUR CLUSTER, Phage major capsid protein, HK97 family, ...
Authors:Bardy, P, Fuzik, T, Hrebik, D, Pantucek, R, Beatty, J.T, Plevka, P.
Deposit date:2019-11-01
Release date:2020-07-22
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (4.54 Å)
Cite:Structure and mechanism of DNA delivery of a gene transfer agent.
Nat Commun, 11, 2020
6TUI
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BU of 6tui by Molmil
Virion of empty GTA particle
Descriptor: Adaptor protein Rcc01688, Phage major capsid protein, HK97 family, ...
Authors:Bardy, P, Fuzik, T, Hrebik, D, Pantucek, R, Beatty, J.T, Plevka, P.
Deposit date:2020-01-07
Release date:2020-10-14
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (10.47 Å)
Cite:Virion of empty GTA particle
Nat Commun, 11, 2020
6TE9
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BU of 6te9 by Molmil
Neck of native GTA particle computed with C6 symmetry
Descriptor: Adaptor protein Rcc01688, Phage major tail protein, TP901-1 family, ...
Authors:Bardy, P, Fuzik, T, Hrebik, D, Pantucek, R, Beatty, J.T, Plevka, P.
Deposit date:2019-11-11
Release date:2020-07-22
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.58 Å)
Cite:Structure and mechanism of DNA delivery of a gene transfer agent.
Nat Commun, 11, 2020
6TE8
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BU of 6te8 by Molmil
Neck of native GTA particle computed with C12 symmetry
Descriptor: Adaptor protein Rcc01688, Phage portal protein, HK97 family
Authors:Bardy, P, Fuzik, T, Hrebik, D, Pantucek, R, Beatty, J.T, Plevka, P.
Deposit date:2019-11-11
Release date:2020-07-22
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.32 Å)
Cite:Structure and mechanism of DNA delivery of a gene transfer agent.
Nat Commun, 11, 2020
6TEB
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BU of 6teb by Molmil
Tail-baseplate interface of native GTA particle computed with C6 symmetry
Descriptor: Distal tail protein Rcc01695, Tail tube protein Rcc01691
Authors:Bardy, P, Fuzik, T, Hrebik, D, Pantucek, R, Beatty, J.T, Plevka, P.
Deposit date:2019-11-11
Release date:2020-07-22
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (4.14 Å)
Cite:Structure and mechanism of DNA delivery of a gene transfer agent.
Nat Commun, 11, 2020
6TOA
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BU of 6toa by Molmil
Neck of empty GTA particle computed with C6 symmetry
Descriptor: Adaptor protein Rcc01688, Portal protein Rcc01684, Stopper protein Rcc01689, ...
Authors:Bardy, P, Fuzik, T, Hrebik, D, Pantucek, R, Beatty, J.T, Plevka, P.
Deposit date:2019-12-11
Release date:2020-07-22
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.47 Å)
Cite:Structure and mechanism of DNA delivery of a gene transfer agent.
Nat Commun, 11, 2020
8Q01
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BU of 8q01 by Molmil
Neck of phage 812 after tail contraction (C6)
Descriptor: Adaptor protein, Capsid protein, Tail sheath protein, ...
Authors:Cienikova, Z, Siborova, M, Fuzik, T, Plevka, P.
Deposit date:2023-07-27
Release date:2024-08-07
Method:ELECTRON MICROSCOPY (3.58 Å)
Cite:Genome anchoring, retention, and release by neck proteins of Herelleviridae phage 812
To Be Published
8Q1I
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BU of 8q1i by Molmil
Neck-tail junction of phage 812 after tail contraction (C6)
Descriptor: Tail sheath protein, Tail terminator protein
Authors:Cienikova, Z, Siborova, M, Fuzik, T, Plevka, P.
Deposit date:2023-07-31
Release date:2024-08-14
Method:ELECTRON MICROSCOPY (3.53 Å)
Cite:Genome anchoring, retention, and release by neck proteins of Herelleviridae phage 812
To Be Published
8Q7D
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BU of 8q7d by Molmil
Neck of phage 812 after tail contraction (C12)
Descriptor: DNA forward strand (120-MER), DNA reverse strand (120-MER), Portal protein, ...
Authors:Cienikova, Z, Siborova, M, Fuzik, T, Plevka, P.
Deposit date:2023-08-16
Release date:2024-08-28
Method:ELECTRON MICROSCOPY (3.07 Å)
Cite:Genome anchoring, retention, and release by neck proteins of Herelleviridae phage 812
To Be Published
8QEK
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BU of 8qek by Molmil
Neck and tail of phage 812 after tail contraction (composite)
Descriptor: Anchor DNA forward strand (120-MER), Anchor DNA reverse strand (120-MER), Baseplate hub assembly protein, ...
Authors:Cienikova, Z, Siborova, M, Fuzik, T, Plevka, P.
Deposit date:2023-08-31
Release date:2024-09-11
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Genome anchoring, retention, and release by neck proteins of Herelleviridae phage 812
To Be Published
8QGR
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BU of 8qgr by Molmil
Stopper protein of phage 812 in closed conformation
Descriptor: Capsid protein, ZINC ION
Authors:Cienikova, Z, Popelarova, B, Plevka, P.
Deposit date:2023-09-05
Release date:2024-09-11
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Genome anchoring, retention, and release by neck proteins of Herelleviridae phage 812
To Be Published
8QEM
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BU of 8qem by Molmil
Neck channel of phage 812 after tail contraction (C1)
Descriptor: Channel DNA forward strand (63-MER), Channel DNA reverse strand (63-MER), Portal protein, ...
Authors:Cienikova, Z, Siborova, M, Fuzik, T, Plevka, P.
Deposit date:2023-08-31
Release date:2024-09-11
Method:ELECTRON MICROSCOPY (3.96 Å)
Cite:Genome anchoring, retention, and release by neck proteins of Herelleviridae phage 812
To Be Published

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PDB entries from 2024-09-18

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