Author results

3ANG
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CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS FADR IN COMPLEX WITH E. COLI-DERIVED DODECYL-COA
Descriptor:Transcriptional repressor, TetR family, DODECYL-COA
Authors:Agari, Y., Sakamoto, K., Agari, K., Kuramitsu, S., Shinkai, A.
Deposit date:2010-09-01
Release date:2011-03-09
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:TetR-family transcriptional repressor Thermus thermophilus FadR controls fatty acid degradation.
Microbiology, 157, 2011
3ANP
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CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS FADR, A TETR FAMILLY TRANSCRIPTIONAL REPRESSOR, IN COMPLEX WITH LAUROYL-COA.
Descriptor:Transcriptional repressor, TetR family, DODECYL-COA, ...
Authors:Agari, Y., Agari, K., Sakamoto, K., Kuramitsu, S., Shinkai, A.
Deposit date:2010-09-06
Release date:2011-03-09
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:TetR-family transcriptional repressor Thermus thermophilus FadR controls fatty acid degradation.
Microbiology, 157, 2011
3VG8
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CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN TTHB210 FROM THERMUS THERMOPHILUS HB8
Descriptor:Hypothetical Protein TTHB210
Authors:Agari, Y., Sakamoto, K., Agari, K., Kuramitsu, S., Shinkai, A.
Deposit date:2011-08-03
Release date:2011-11-30
Last modified:2012-03-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of hypothetical protein TTHB210, controlled by the [sigma]E/anti-[sigma]E regulatory system in Thermus thermophilus HB8, reveals a novel homodecamer
Proteins, 80, 2012
3VUQ
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CRYSTAL STRUCTURE OF TTHA0167, A TRANSCRIPTIONAL REGULATOR, TETR/ACRR FAMILY FROM THERMUS THERMOPHILUS HB8
Descriptor:Transcriptional regulator (TetR/AcrR family)
Authors:Agari, Y., Sakamoto, K., Agari, K., Kuramitsu, S., Shinkai, A.
Deposit date:2012-07-04
Release date:2013-02-27
Last modified:2013-12-25
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structure and function of a TetR family transcriptional regulator, SbtR, from thermus thermophilus HB8
Proteins, 81, 2013
2EQA
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CRYSTAL STRUCTURE OF THE HYPOTHETICAL SUA5 PROTEIN FROM SULFOLOBUS TOKODAII
Descriptor:Hypothetical protein ST1526, MAGNESIUM ION, ADENOSINE MONOPHOSPHATE
Authors:Agari, Y., Shinkai, A., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-30
Release date:2008-01-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:X-ray crystal structure of a hypothetical Sua5 protein from Sulfolobus tokodaii strain 7
Proteins, 70, 2008
1WK2
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CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN FROM THERMUS THERMOPHILUS HB8
Descriptor:HYPOTHETICAL PROTEIN
Authors:Agari, Y., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-30
Release date:2004-11-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of a hypothetical protein from thermus thermophilus HB8
To be Published
2DP9
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CRYSTAL STRUCTURE OF CONSERVED HYPOTHETICAL PROTEIN TTHA0113 FROM THERMUS THERMOPHILUS HB8
Descriptor:Hypothetical protein TTHA0113
Authors:Agari, Y., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-05-08
Release date:2006-11-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of Conserved Hypothetical Protein TTHA0113 from Thermus thermophilus HB8
To be Published
2EH3
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CRYSTAL STRUCTURE OF AQ_1058, A TRANSCRIPTIONAL REGULATOR (TERR/ACRR FAMILY) FROM AQUIFEX AEOLICUS VF5
Descriptor:Transcriptional regulator, MAGNESIUM ION
Authors:Agari, Y., Shinkai, A., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-03
Release date:2007-09-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structure of aq_1058, a transcriptional regulator (TerR/AcrR family) from Aquifex aeolicus VF5
To be Published
2YUT
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CRYSTAL STRUCTURE OF PUTATIVE SHORT-CHAIN OXIDOREDUCTASE TTHB094 FROM THERMUS THERMOPHILUS HB8
Descriptor:Putative short-chain oxidoreductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Agari, Y., Shinkai, A., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-06
Release date:2007-10-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of Putative Short-Chain Oxidoreductase TTHB094 from Thermus thermophilus HB8
To be Published
2YV4
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CRYSTAL STRUCTURE OF C-TERMINAL SUA5 DOMAIN FROM PYROCOCCUS HORIKOSHII HYPOTHETICAL SUA5 PROTEIN PH0435
Descriptor:Hypothetical protein PH0435
Authors:Agari, Y., Shinkai, A., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-09
Release date:2007-10-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of C-terminal Sua5 Domain from Pyrococcus horikoshii Hypothetical Sua5 Protein PH0435
To be Published
2ZCA
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CRYSTAL STRUCTURE OF TTHB189, A CRISPR-ASSOCIATED PROTEIN, CSE2 FAMILY FROM THERMUS THERMOPHILUS HB8
Descriptor:Putative uncharacterized protein TTHB189
Authors:Agari, Y., Shinkai, A., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-11-08
Release date:2008-10-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:X-ray crystal structure of a CRISPR-associated protein, Cse2, from Thermus thermophilus HB8
Proteins, 73, 2008
2ZCW
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CRYSTAL STRUCTURE OF TTHA1359, A TRANSCRIPTIONAL REGULATOR, CRP/FNR FAMILY FROM THERMUS THERMOPHILUS HB8
Descriptor:Transcriptional regulator, FNR/CRP family, (4S)-2-METHYL-2,4-PENTANEDIOL
Authors:Agari, Y., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-11-13
Release date:2007-12-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Global gene expression mediated by Thermus thermophilus SdrP, a CRP/FNR family transcriptional regulator
Mol.Microbiol., 70, 2008
2ZDJ
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CRYSTAL STRUCTURE OF TTMA177, A HYPOTHETICAL PROTEIN FROM THERMUS THERMOPHILUS PHAGE TMA
Descriptor:hypothetical protein TTMA177
Authors:Agari, Y., Tamakoshi, M., Yamagishi, A., Shinkai, A., Ebihara, A., Yokoyama, S., Kuramitsu, S., Oshima, T., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-11-26
Release date:2008-12-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of TTMA177, a Hypothetical Protein from Thermus thermophilus phage TMA
To be Published
3B02
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CRYSTAL STRUCTURE OF TTHB099, A TRANSCRIPTIONAL REGULATOR CRP FAMILY FROM THERMUS THERMOPHILUS HB8
Descriptor:Transcriptional regulator, Crp family
Authors:Agari, Y., Kuramitsu, S., Shinkai, A., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2011-06-03
Release date:2011-06-15
Last modified:2013-06-19
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:X-ray crystal structure of TTHB099, a CRP/FNR superfamily transcriptional regulator from Thermus thermophilus HB8, reveals a DNA-binding protein with no required allosteric effector molecule
Proteins, 80, 2012
3VPR
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CRYSTAL STRUCTURE OF A TETR FAMILY TRANSCRIPTIONAL REGULATOR PFMR FROM THERMUS THERMOPHILUS HB8
Descriptor:Transcriptional regulator, TetR family
Authors:Agari, Y., Sakamoto, K., Kuramitsu, S., Shinkai, A.
Deposit date:2012-03-12
Release date:2012-07-11
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Transcriptional repression mediated by a TetR family protein, PfmR, from Thermus thermophilus HB8
J.Bacteriol., 2012
3WHP
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CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF THEMUS THERMOPHILUS LITR IN COMPLEX WITH COBALAMIN
Descriptor:Probable transcriptional regulator, COBALAMIN
Authors:Agari, Y., Takano, H., Beppu, T., Ueda, K., Shinkai, A.
Deposit date:2013-08-30
Release date:2014-09-03
Method:X-RAY DIFFRACTION (2.52 Å)
Cite:Crystal structure of the C-terminal domain of Themus thermophilus LitR in complex with cobalamin
To be Published
2EF7
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CRYSTAL STRUCTURE OF ST2348, A HYPOTHETICAL PROTEIN WITH CBS DOMAINS FROM SULFOLOBUS TOKODAII STRAIN7
Descriptor:Hypothetical protein ST2348
Authors:Agari, Y., Karthe, P., Kumarevel, T., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-02-21
Release date:2007-08-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of ST2348, a CBS domain protein, from hyperthermophilic archaeon Sulfolobus tokodaii
Biochem.Biophys.Res.Commun., 375, 2008
2ZOP
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X-RAY CRYSTAL STRUCTURE OF A CRISPR-ASSOCIATED CMR5 FAMILY PROTEIN FROM THERMUS THERMOPHILUS HB8
Descriptor:Putative uncharacterized protein TTHB164, SULFATE ION
Authors:Sakamoto, K., Agari, Y., Shinkai, A., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-05-28
Release date:2009-02-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:X-ray crystal structure of a CRISPR-associated RAMP superfamily protein, Cmr5, from Thermus thermophilus HB8
Proteins, 75, 2009
3AAI
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X-RAY CRYSTAL STRUCTURE OF CSOR FROM THERMUS THERMOPHILUS HB8
Descriptor:Copper homeostasis operon regulatory protein
Authors:Sakamoto, K., Agari, Y., Shinkai, A., Kuramitsu, S.
Deposit date:2009-11-17
Release date:2010-04-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and functional characterization of the transcriptional repressor CsoR from Thermus thermophilus HB8
Microbiology, 156, 2010
2PCR
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CRYSTAL STRUCTURE OF MYO-INOSITOL-1(OR 4)-MONOPHOSPHATASE (AQ_1983) FROM AQUIFEX AEOLICUS VF5
Descriptor:Inositol-1-monophosphatase
Authors:Jeyakanthan, J., Gayathri, D., Velmurugan, D., Agari, Y., Bessho, Y., Ellis, M.J., Antonyuk, S.V., Strange, R.W., Hasnain, S.S., Ebihara, A., Kuramitsu, S., Shinkai, A., Shiro, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-30
Release date:2007-10-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of Myo-inositol-1(or 4)-monophosphatase (aq_1983) from Aquifex Aeolicus VF5
To be Published
2OMD
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CRYSTAL STRUCTURE OF MOLYBDOPTERIN CONVERTING FACTOR SUBUNIT 2 (AQ_2181) FROM AQUIFEX AEOLICUS VF5
Descriptor:Molybdopterin-converting factor subunit 2, SODIUM ION, CHLORIDE ION, ...
Authors:Jeyakanthan, J., Kanaujia, S.P., Vasuki Ranjani, C., Sekar, K., Agari, Y., Ebihara, A., Kuramitsu, S., Shinkai, A., Shiro, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-01-22
Release date:2008-01-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of molybdopterin converting factor subunit 2 (aq_2181) from aquifex aeolicus VF5
To be Published
2PBP
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CRYSTAL STRUCTURE OF ENOYL-COA HYDRATES SUBUNIT I (GK_2039) FROM GEOBACILLUS KAUSTOPHILUS HTA426
Descriptor:Enoyl-CoA hydratase subunit I
Authors:Jeyakanthan, J., Kanaujia, S.P., Vasuki, R.C., Sekar, K., Agari, Y., Ebihara, A., Kuramitsu, S., Shinkai, A., Shiro, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-29
Release date:2007-10-02
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of ENOYL-CoA hydrates subunit I (gk_2039) from geobacillus kaustophilus HTA426
To be Published
2PBQ
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CRYSTAL STRUCTURE OF MOLYBDENUM COFACTOR BIOSYNTHESIS (AQ_061) FROM AQUIFEX AEOLICUS VF5
Descriptor:Molybdenum cofactor biosynthesis MOG
Authors:Jeyakanthan, J., Mahesh, S., Kanaujia, S.P., Ramakumar, S., Sekar, K., Agari, Y., Ebihara, A., Kuramitsu, S., Shinkai, A., Shiro, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-29
Release date:2007-10-02
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of molybdenum cofactor biosynthesis (aq_061) from aquifex aeolicus VF5
to be published
2PCN
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CRYSTAL STRUCTURE OF S-ADENOSYLMETHIONINE: 2-DIMETHYLMENAQUINONE METHYLTRANSFERASE (GK_1813) FROM GEOBACILLUS KAUSTOPHILUS HTA426
Descriptor:S-adenosylmethionine:2-demethylmenaquinone methyltransferase, ACETATE ION
Authors:Jeyakanthan, J., Kanaujia, S.P., Rafi, Z.A., Sekar, K., Agari, Y., Ebihara, A., Kuramitsu, S., Shinkai, A., Shiro, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-30
Release date:2007-10-02
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of S-adenosylmethionine:2-dimethylmenaquinone methyltransferase (gk_1813) from geobacillus kaustophilus HTA426
To be Published
2PQ0
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CRYSTAL STRUCTURE OF HYOPTHETICAL PROTEIN (GK_1056) FROM GEOBACILLUS KAUSTOPHILUS HTA426
Descriptor:Hypothetical conserved protein GK1056
Authors:Kanaujia, S.P., Jeyakanthan, J., Kavyashree, M., Sekar, K., Agari, Y., Ebihara, A., Kuramitsu, S., Shinkai, A., Shiro, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-01
Release date:2008-05-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of Hyopthetical protein (gk_1056) from geobacillus Kaustophilus HTA426
To be Published
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