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2CDV
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REFINED STRUCTURE OF CYTOCHROME C3 AT 1.8 ANGSTROMS RESOLUTION
Descriptor:CYTOCHROME C3, PROTOPORPHYRIN IX CONTAINING FE
Authors:Higuchi, Y., Kusunoki, M., Matsuura, Y., Yasuoka, N., Kakudo, M.
Deposit date:1983-11-15
Release date:1984-02-02
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Refined structure of cytochrome c3 at 1.8 A resolution
J.Mol.Biol., 172, 1984
1C53
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S-CLASS CYTOCHROMES C HAVE A VARIETY OF FOLDING PATTERNS: STRUCTURE OF CYTOCHROME C-553 FROM DESULFOVIBRIO VULGARIS DETERMINED BY THE MULTI-WAVELENGTH ANOMALOUS DISPERSION METHOD
Descriptor:CYTOCHROME C553, PROTOPORPHYRIN IX CONTAINING FE
Authors:Nakagawa, A., Higuchi, Y., Yasuoka, N., Katsube, Y., Yaga, T.
Deposit date:1991-08-26
Release date:1993-10-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:S-class cytochromes c have a variety of folding patterns: structure of cytochrome c-553 from Desulfovibrio vulgaris determined by the multi-wavelength anomalous dispersion method.
J.Biochem.(Tokyo), 108, 1990
1CPR
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ST. LOUIS CYTOCHROME C' FROM THE PURPLE PHOTOTROPIC BACTERIUM, RHODOBACTER CAPSULATUS
Descriptor:CYTOCHROME C', ZINC ION, PROTOPORPHYRIN IX CONTAINING FE
Authors:Tahirov, T.H., Misaki, S., Meyer, T.E., Cusanovich, M.A., Yasuoka, N.
Deposit date:1996-04-09
Release date:1997-01-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of cytochrome c' from Rhodobacter capsulatus strain St Louis: an unusual molecular association induced by bridging Zn ions.
Acta Crystallogr.,Sect.D, 53, 1997
1NBB
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N-BUTYLISOCYANIDE BOUND RHODOBACTER CAPSULATUS CYTOCHROME C'
Descriptor:CYTOCHROME C', PROTOPORPHYRIN IX CONTAINING FE, N-BUTYL ISOCYANIDE
Authors:Tahirov, T.H., Misaki, S., Meyer, T.E., Cusanovich, M.A., Higuchi, Y., Yasuoka, N.
Deposit date:1996-03-18
Release date:1996-08-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Concerted movement of side chains in the haem vicinity observed on ligand binding in cytochrome c' from rhodobacter capsulatus.
Nat.Struct.Biol., 3, 1996
1EEX
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CRYSTAL STRUCTURE OF THE DIOL DEHYDRATASE-ADENINYLPENTYLCOBALAMIN COMPLEX FROM KLEBSIELLA OXYTOCA
Descriptor:PROPANEDIOL DEHYDRATASE, POTASSIUM ION, CO-(ADENIN-9-YL-PENTYL)-COBALAMIN, ...
Authors:Shibata, N., Masuda, J., Toraya, T., Morimoto, Y., Yasuoka, N.
Deposit date:2000-02-04
Release date:2001-02-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:How a protein generates a catalytic radical from coenzyme B(12): X-ray structure of a diol-dehydratase-adeninylpentylcobalamin complex.
Structure Fold.Des., 8, 2000
1EGM
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CRYSTAL STRUCTURE OF DIOL DEHYDRATASE-CYANOCOBALAMIN COMPLEX AT 100K.
Descriptor:PROPANEDIOL DEHYDRATASE, POTASSIUM ION, CO-CYANOCOBALAMIN, ...
Authors:Masuda, J., Shibata, N., Toraya, T., Morimoto, Y., Yasuoka, N.
Deposit date:2000-02-15
Release date:2000-09-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:How a protein generates a catalytic radical from coenzyme B(12): X-ray structure of a diol-dehydratase-adeninylpentylcobalamin complex.
Structure Fold.Des., 8, 2000
1EGV
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CRYSTAL STRUCTURE OF THE DIOL DEHYDRATASE-ADENINYLPENTYLCOBALAMIN COMPLEX FROM KLEBSELLA OXYTOCA UNDER THE ILLUMINATED CONDITION.
Descriptor:PROPANEDIOL DEHYDRATASE, POTASSIUM ION, CO-(ADENIN-9-YL-PENTYL)-COBALAMIN, ...
Authors:Masuda, J., Shibata, N., Toraya, T., Morimoto, Y., Yasuoka, N.
Deposit date:2000-02-17
Release date:2001-02-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:How a protein generates a catalytic radical from coenzyme B(12): X-ray structure of a diol-dehydratase-adeninylpentylcobalamin complex.
Structure Fold.Des., 8, 2000
1H2A
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SINGLE CRYSTALS OF HYDROGENASE FROM DESULFOVIBRIO VULGARIS
Descriptor:HYDROGENASE, IRON/SULFUR CLUSTER, FE3-S4 CLUSTER, ...
Authors:Higuchi, Y., Yasuoka, N.
Deposit date:1997-10-17
Release date:1999-02-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Unusual ligand structure in Ni-Fe active center and an additional Mg site in hydrogenase revealed by high resolution X-ray structure analysis.
Structure, 5, 1997
1RDV
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RUBREDOXIN FROM DESULFOVIBRIO VULGARIS MIYAZAKI F, TRIGONAL CRYSTAL FORM
Descriptor:RUBREDOXIN, FE (III) ION
Authors:Higuchi, Y., Yasuoka, N.
Deposit date:1998-09-30
Release date:1999-05-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure determination of rubredoxin from Desulfovibrio vulgaris Miyazaki F in two crystal forms.
Acta Crystallogr.,Sect.D, 55, 1999
2RDV
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RUBREDOXIN FROM DESULFOVIBRIO VULGARIS MIYAZAKI F, MONOCLINIC CRYSTAL FORM
Descriptor:RUBREDOXIN, FE (III) ION
Authors:Higuchi, Y., Yasuoka, N.
Deposit date:1998-10-07
Release date:1999-05-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure determination of rubredoxin from Desulfovibrio vulgaris Miyazaki F in two crystal forms.
Acta Crystallogr.,Sect.D, 55, 1999
1EQQ
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SINGLE STRANDED DNA BINDING PROTEIN AND SSDNA COMPLEX
Descriptor:5'-R(*(5MU)P*(5MU)P*(5MU))-3', SINGLE STRANDED DNA BINDING PROTEIN
Authors:Matsumoto, T., Morimoto, Y., Shibata, N., Yasuoka, N., Shimamoto, N.
Deposit date:2000-04-06
Release date:2003-09-23
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Roles of functional loops and the C-terminal segment of a single-stranded DNA binding protein elucidated by X-Ray structure analysis
J.Biochem.(Tokyo), 127, 2000
1QVC
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CRYSTAL STRUCTURE ANALYSIS OF SINGLE STRANDED DNA BINDING PROTEIN (SSB) FROM E.COLI
Descriptor:SINGLE STRANDED DNA BINDING PROTEIN MONOMER
Authors:Matsumoto, T., Morimoto, Y., Shibata, N., Shimamoto, N., Tsukihara, T., Yasuoka, N.
Deposit date:1999-07-07
Release date:2000-06-05
Last modified:2012-07-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Roles of functional loops and the C-terminal segment of a single-stranded DNA binding protein elucidated by X-Ray structure analysis.
J.Biochem.(Tokyo), 127, 2000
1A7V
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CYTOCHROME C' FROM RHODOPSEUDOMONAS PALUSTRIS
Descriptor:CYTOCHROME C', PROTOPORPHYRIN IX CONTAINING FE
Authors:Shibata, N., Iba, S., Misaki, S., Meyer, T.E., Bartsch, R.G., Cusanovich, M.A., Higuchi, Y., Yasuoka, N.
Deposit date:1998-03-18
Release date:1998-06-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Basis for monomer stabilization in Rhodopseudomonas palustris cytochrome c' derived from the crystal structure.
J.Mol.Biol., 284, 1998
1DIO
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DIOL DEHYDRATASE-CYANOCOBALAMIN COMPLEX FROM KLEBSIELLA OXYTOCA
Descriptor:PROTEIN (DIOL DEHYDRATASE), POTASSIUM ION, S-1,2-PROPANEDIOL, ...
Authors:Shibata, N., Masuda, J., Tobimatsu, T., Toraya, T., Suto, K., Morimoto, Y., Yasuoka, N.
Deposit date:1999-01-27
Release date:2000-01-30
Last modified:2012-10-24
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A new mode of B12 binding and the direct participation of a potassium ion in enzyme catalysis: X-ray structure of diol dehydratase.
Structure Fold.Des., 7, 1999
1FLM
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DIMER OF FMN-BINDING PROTEIN FROM DESULFOVIBRIO VULGARIS (MIYAZAKI F)
Descriptor:PROTEIN (FMN-BINDING PROTEIN), FLAVIN MONONUCLEOTIDE
Authors:Suto, K., Kawagoe, K., Shibata, N., Morimoto, K., Higuchi, Y., Kitamura, M., Nakaya, T., Yasuoka, N.
Deposit date:1999-03-10
Release date:2000-03-06
Last modified:2014-11-26
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:How do the x-ray structure and the NMR structure of FMN-binding protein differ?
Acta Crystallogr.,Sect.D, 56, 2000
1IWB
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CRYSTAL STRUCTURE OF DIOL DEHYDRATASE
Descriptor:DIOL DEHYDRATASE alpha chain, DIOL DEHYDRATASE beta chain, DIOL DEHYDRATASE gamma chain, ...
Authors:Shibata, N., Masuda, J., Morimoto, Y., Yasuoka, N., Toraya, T.
Deposit date:2002-05-01
Release date:2003-05-01
Last modified:2012-10-24
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Substrate-induced conformational change of a coenzyme B12-dependent enzyme: crystal structure of the substrate-free form of diol dehydratase
Biochemistry, 41, 2002
1UBH
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THREE-DIMENSIONAL STRUCTURE OF THE CARBON MONOXIDE COMPLEX OF [NIFE]HYDROGENASE FROM DESULUFOVIBRIO VULGARIS MIYAZAKI F
Descriptor:Periplasmic [NiFe] hydrogenase small subunit, Periplasmic [NiFe] hydrogenase large subunit, IRON/SULFUR CLUSTER, ...
Authors:Ogata, H., Mizoguchi, Y., Mizuno, N., Miki, K., Adachi, S., Yasuoka, N., Yagi, T., Yamauchi, O., Hirota, S., Higuchi, Y.
Deposit date:2003-04-04
Release date:2003-04-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural Studies of the Carbon Monoxide Complex of [NiFe]hydrogenase from Desulfovibrio vulgaris Miyazaki F: Suggestion for the Initial Activation Site for Dihydrogen
J.Am.Chem.Soc., 124, 2002
1UBJ
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THREE-DIMENSIONAL STRUCTURE OF THE CARBON MONOXIDE COMPLEX OF [NIFE]HYDROGENASE FROM DESULUFOVIBRIO VULGARIS MIYAZAKI F
Descriptor:Periplasmic [NiFe] hydrogenase small subunit, Periplasmic [NiFe] hydrogenase large subunit, IRON/SULFUR CLUSTER, ...
Authors:Ogata, H., Mizoguchi, Y., Mizuno, N., Miki, K., Adachi, S., Yasuoka, N., Yagi, T., Yamauchi, O., Hirota, S., Higuchi, Y.
Deposit date:2003-04-04
Release date:2003-04-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural Studies of the Carbon Monoxide Complex of [NiFe]hydrogenase from Desulfovibrio vulgaris Miyazaki F: Suggestion for the Initial Activation Site for Dihydrogen
J.Am.Chem.Soc., 124, 2002
1UBK
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THREE-DIMENSIONAL STRUCTURE OF THE CARBON MONOXIDE COMPLEX OF [NIFE]HYDROGENASE FROM DESULUFOVIBRIO VULGARIS MIYAZAKI F
Descriptor:Periplasmic [NiFe] hydrogenase Small subunit, Periplasmic [NiFe] hydrogenase Large subunit, IRON/SULFUR CLUSTER, ...
Authors:Ogata, H., Mizoguchi, Y., Mizuno, N., Miki, K., Adachi, S., Yasuoka, N., Yagi, T., Yamauchi, O., Hirota, S., Higuchi, Y.
Deposit date:2003-04-04
Release date:2003-04-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:Structural Studies of the Carbon Monoxide Complex of [NiFe]hydrogenase from Desulfovibrio vulgaris Miyazaki F: Suggestion for the Initial Activation Site for Dihydrogen
J.Am.Chem.Soc., 124, 2002
1UBL
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THREE-DIMENSIONAL STRUCTURE OF THE CARBON MONOXIDE COMPLEX OF [NIFE]HYDROGENASE FROM DESULUFOVIBRIO VULGARIS MIYAZAKI F
Descriptor:Periplasmic [NiFe] hydrogenase Small subunit, Periplasmic [NiFe] hydrogenase Large subunit, IRON/SULFUR CLUSTER, ...
Authors:Ogata, H., Mizoguchi, Y., Mizuno, N., Miki, K., Adachi, S., Yasuoka, N., Yagi, T., Yamauchi, O., Hirota, S., Higuchi, Y.
Deposit date:2003-04-04
Release date:2003-04-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structural Studies of the Carbon Monoxide Complex of [NiFe]hydrogenase from Desulfovibrio vulgaris Miyazaki F: Suggestion for the Initial Activation Site for Dihydrogen
J.Am.Chem.Soc., 124, 2002
1UBM
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THREE-DIMENSIONAL STRUCTURE OF THE CARBON MONOXIDE COMPLEX OF [NIFE]HYDROGENASE FROM DESULUFOVIBRIO VULGARIS MIYAZAKI F
Descriptor:Periplasmic [NiFe] hydrogenase Small subunit, Periplasmic [NiFe] hydrogenase Large subunit, IRON/SULFUR CLUSTER, ...
Authors:Ogata, H., Mizoguchi, Y., Mizuno, N., Miki, K., Adachi, S., Yasuoka, N., Yagi, T., Yamauchi, O., Hirota, S., Higuchi, Y.
Deposit date:2003-04-04
Release date:2003-04-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural Studies of the Carbon Monoxide Complex of [NiFe]hydrogenase from Desulfovibrio vulgaris Miyazaki F: Suggestion for the Initial Activation Site for Dihydrogen
J.Am.Chem.Soc., 124, 2002
1UBO
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THREE-DIMENSIONAL STRUCTURE OF THE CARBON MONOXIDE COMPLEX OF [NIFE]HYDROGENASE FROM DESULUFOVIBRIO VULGARIS MIYAZAKI F
Descriptor:Periplasmic [NiFe] hydrogenase Small subunit, Periplasmic [NiFe] hydrogenase Large subunit, IRON/SULFUR CLUSTER, ...
Authors:Ogata, H., Mizoguchi, Y., Mizuno, N., Miki, K., Adachi, S., Yasuoka, N., Yagi, T., Yamauchi, O., Hirota, S., Higuchi, Y.
Deposit date:2003-04-04
Release date:2003-04-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural Studies of the Carbon Monoxide Complex of [NiFe]hydrogenase from Desulfovibrio vulgaris Miyazaki F: Suggestion for the Initial Activation Site for Dihydrogen
J.Am.Chem.Soc., 124, 2002
1UBR
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THREE-DIMENSIONAL STRUCTURE OF THE CARBON MONOXIDE COMPLEX OF [NIFE]HYDROGENASE FROM DESULUFOVIBRIO VULGARIS MIYAZAKI F
Descriptor:Periplasmic [NiFe] hydrogenase Small subunit, Periplasmic [NiFe] hydrogenase Large subunit, IRON/SULFUR CLUSTER, ...
Authors:Ogata, H., Mizoguchi, Y., Mizuno, N., Miki, K., Adachi, S., Yasuoka, N., Yagi, T., Yamauchi, O., Hirota, S., Higuchi, Y.
Deposit date:2003-04-04
Release date:2003-04-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Structural Studies of the Carbon Monoxide Complex of [NiFe]hydrogenase from Desulfovibrio vulgaris Miyazaki F: Suggestion for the Initial Activation Site for Dihydrogen
J.Am.Chem.Soc., 124, 2002
1UBT
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THREE-DIMENSIONAL STRUCTURE OF THE CARBON MONOXIDE COMPLEX OF [NIFE]HYDROGENASE FROM DESULUFOVIBRIO VULGARIS MIYAZAKI F
Descriptor:Periplasmic [NiFe] hydrogenase Small subunit, Periplasmic [NiFe] hydrogenase Large subunit, IRON/SULFUR CLUSTER, ...
Authors:Ogata, H., Mizoguchi, Y., Mizuno, N., Miki, K., Adachi, S., Yasuoka, N., Yagi, T., Yamauchi, O., Hirota, S., Higuchi, Y.
Deposit date:2003-04-04
Release date:2003-04-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Structural Studies of the Carbon Monoxide Complex of [NiFe]hydrogenase from Desulfovibrio vulgaris Miyazaki F: Suggestion for the Initial Activation Site for Dihydrogen
J.Am.Chem.Soc., 124, 2002
1UBU
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THREE-DIMENSIONAL STRUCTURE OF THE CARBON MONOXIDE COMPLEX OF [NIFE]HYDROGENASE FROM DESULUFOVIBRIO VULGARIS MIYAZAKI F
Descriptor:Periplasmic [NiFe] hydrogenase Small subunit, Periplasmic [NiFe] hydrogenase Large subunit, IRON/SULFUR CLUSTER, ...
Authors:Ogata, H., Mizoguchi, Y., Mizuno, N., Miki, K., Adachi, S., Yasuoka, N., Yagi, T., Yamauchi, O., Hirota, S., Higuchi, Y.
Deposit date:2003-04-04
Release date:2003-04-29
Last modified:2014-04-16
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural Studies of the Carbon Monoxide Complex of [NiFe]hydrogenase from Desulfovibrio vulgaris Miyazaki F: Suggestion for the Initial Activation Site for Dihydrogen
J.Am.Chem.Soc., 124, 2002
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