Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
1O75
DownloadVisualize
BU of 1o75 by Molmil
Tp47, the 47-Kilodalton Lipoprotein of Treponema pallidum
Descriptor: 2,3-di-O-sulfo-alpha-D-glucopyranose-(1-6)-2,3-di-O-sulfo-alpha-D-glucopyranose, 47 KDA MEMBRANE ANTIGEN, XENON
Authors:Deka, R.K, Machius, M, Norgard, M.V, Tomchick, D.R.
Deposit date:2002-10-23
Release date:2002-11-01
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of the 47-kDa lipoprotein of Treponema pallidum reveals a novel penicillin-binding protein.
J. Biol. Chem., 277, 2002
1K0F
DownloadVisualize
BU of 1k0f by Molmil
Crystal structure of Zn(II)-free T. pallidum TroA
Descriptor: Periplasmic zinc-binding protein troA
Authors:Lee, Y.H, Dorwart, M.R, Hazlett, K.R, Deka, R.K, Norgard, M.V, Radolf, J.D, Hasemann, C.A.
Deposit date:2001-09-19
Release date:2002-04-10
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The crystal structure of Zn(II)-free Treponema pallidum TroA, a periplasmic metal-binding protein, reveals a closed conformation.
J.Bacteriol., 184, 2002
4U3Q
DownloadVisualize
BU of 4u3q by Molmil
Crystal Structure of Recombinant TP0435 from Treponema pallidum
Descriptor: 17 kDa lipoprotein
Authors:Brautigam, C.A, Deka, R.K, Norgard, M.V.
Deposit date:2014-07-22
Release date:2014-10-22
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Insights into the potential function and membrane organization of the TP0435 (Tp17) lipoprotein from Treponema pallidum derived from structural and biophysical analyses.
Protein Sci., 24, 2015
7JP2
DownloadVisualize
BU of 7jp2 by Molmil
Crystal structure of TP0037 from Treponema pallidum, a D-lactate dehydrogenase
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, D-lactate dehydrogenase
Authors:Brautigam, C.A, Deka, R.K, Norgard, M.V.
Deposit date:2020-08-07
Release date:2020-09-09
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Biophysical and Biochemical Characterization of TP0037, a d-Lactate Dehydrogenase, Supports an Acetogenic Energy Conservation Pathway in Treponema pallidum.
Mbio, 11, 2020
2V84
DownloadVisualize
BU of 2v84 by Molmil
Crystal Structure of the Tp0655 (TpPotD) Lipoprotein of Treponema pallidum
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, SPERMIDINE/PUTRESCINE ABC TRANSPORTER, ...
Authors:Machius, M, Brautigam, C.A, Tomchick, D.R, Ward, P, Otwinowski, Z, Blevine, J.S, Deka, R.K, Norgard, M.V.
Deposit date:2007-08-02
Release date:2007-09-25
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Structural and Biochemical Basis for Polyamine Binding to the Tp0655 Lipoprotein of Treponema Pallidum: Putative Role for Tp0655 (Tppotd) as a Polyamine Receptor.
J.Mol.Biol., 373, 2007
4N13
DownloadVisualize
BU of 4n13 by Molmil
Crystal Structure of PstS (BB_0215) from Borrelia burgdorferi
Descriptor: 1,2-ETHANEDIOL, Phosphate ABC transporter, periplasmic phosphate-binding protein, ...
Authors:Brautigam, C.A, Deka, R.K, Norgard, M.V.
Deposit date:2013-10-03
Release date:2014-01-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Sequence, biophysical, and structural analyses of the PstS lipoprotein (BB0215) from Borrelia burgdorferi reveal a likely binding component of an ABC-type phosphate transporter.
Protein Sci., 23, 2014
3U64
DownloadVisualize
BU of 3u64 by Molmil
The Crystal Structure of Tat-T (Tp0956)
Descriptor: Protein TP_0956, SULFATE ION
Authors:Tomchick, D.R, Brautigam, C.A, Deka, R.K, Norgard, M.V.
Deposit date:2011-10-12
Release date:2012-02-22
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural, Bioinformatic, and In Vivo Analyses of Two Treponema pallidum Lipoproteins Reveal a Unique TRAP Transporter.
J.Mol.Biol., 416, 2012
8FIR
DownloadVisualize
BU of 8fir by Molmil
Crystal structure of TpPta, a phosphotransacetylase from Treponema pallidum
Descriptor: 1,2-ETHANEDIOL, CITRIC ACID, Phosphate acetyltransferase
Authors:Brautigam, C.A, Norgard, M.V, Deka, R.K.
Deposit date:2022-12-16
Release date:2023-05-31
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Biophysical and biochemical studies support TP0094 as a phosphotransacetylase in an acetogenic energy-conservation pathway in Treponema pallidum.
Plos One, 18, 2023
1TOA
DownloadVisualize
BU of 1toa by Molmil
PERIPLASMIC ZINC BINDING PROTEIN TROA FROM TREPONEMA PALLIDUM
Descriptor: GLYCEROL, PROTEIN (PERIPLASMIC BINDING PROTEIN TROA), ZINC ION
Authors:Lee, Y.H, Deka, R.K, Norgard, M.V, Radolf, J.D, Hasemann, C.A.
Deposit date:1999-03-03
Release date:1999-07-05
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Treponema pallidum TroA is a periplasmic zinc-binding protein with a helical backbone.
Nat.Struct.Biol., 6, 1999
3U65
DownloadVisualize
BU of 3u65 by Molmil
The Crystal Structure of Tat-P(T) (Tp0957)
Descriptor: 1,2-ETHANEDIOL, THIOCYANATE ION, Tp33 protein
Authors:Brautigam, C.A, Tomchick, D.R, Deka, R.K, Norgard, M.V.
Deposit date:2011-10-12
Release date:2012-02-22
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural, Bioinformatic, and In Vivo Analyses of Two Treponema pallidum Lipoproteins Reveal a Unique TRAP Transporter.
J.Mol.Biol., 416, 2012
4XDU
DownloadVisualize
BU of 4xdu by Molmil
Crystal structure of Treponema pallidum TP0796 Flavin trafficking protein,a bifunctional FMN transferase/FAD pyrophosphatase, N55Y mutant, ADP bound form
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Tomchick, D.R, Brautigam, C.A, Deka, R.K, Norgard, M.V.
Deposit date:2014-12-20
Release date:2015-10-14
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Evidence for Posttranslational Protein Flavinylation in the Syphilis Spirochete Treponema pallidum: Structural and Biochemical Insights from the Catalytic Core of a Periplasmic Flavin-Trafficking Protein.
Mbio, 6, 2015
4XGX
DownloadVisualize
BU of 4xgx by Molmil
Crystal structure of Escherichia coli Flavin trafficking protein, an FMN transferase, Y60N mutant, ADP-inhibited
Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, FAD:protein FMN transferase, ...
Authors:Tomchick, D.R, Brautigam, C.A, Deka, R.K, Norgard, M.V.
Deposit date:2015-01-02
Release date:2015-12-16
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Molecular insights into the enzymatic diversity of flavin-trafficking protein (Ftp; formerly ApbE) in flavoprotein biogenesis in the bacterial periplasm.
Microbiologyopen, 5, 2016
4XDR
DownloadVisualize
BU of 4xdr by Molmil
Crystal structure of Treponema pallidum TP0796 Flavin trafficking protein, a bifunctional FMN transferase/FAD pyrophosphatase, D284A mutant, ADN bound form
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, ADENOSINE, ...
Authors:Tomchick, D.R, Brautigam, C.A, Deka, R.K, Norgard, M.V.
Deposit date:2014-12-19
Release date:2015-10-14
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Evidence for Posttranslational Protein Flavinylation in the Syphilis Spirochete Treponema pallidum: Structural and Biochemical Insights from the Catalytic Core of a Periplasmic Flavin-Trafficking Protein.
Mbio, 6, 2015
4XGW
DownloadVisualize
BU of 4xgw by Molmil
Crystal structure of Escherichia coli Flavin trafficking protein, an FMN transferase, E169K mutant
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, FAD:protein FMN transferase, ...
Authors:Tomchick, D.R, Brautigam, C.A, Deka, R.K, Norgard, M.V.
Deposit date:2015-01-02
Release date:2015-12-16
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.747 Å)
Cite:Molecular insights into the enzymatic diversity of flavin-trafficking protein (Ftp; formerly ApbE) in flavoprotein biogenesis in the bacterial periplasm.
Microbiologyopen, 5, 2016
5U2P
DownloadVisualize
BU of 5u2p by Molmil
The crystal structure of Tp0737 from Treponema pallidum
Descriptor: 1,2-ETHANEDIOL, BROMIDE ION, CHLORIDE ION, ...
Authors:Brautigam, C.A, Deka, R.K, Tomchick, D.R, Norgard, M.V.
Deposit date:2016-11-30
Release date:2017-02-22
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Functional clues from the crystal structure of an orphan periplasmic ligand-binding protein from Treponema pallidum.
Protein Sci., 26, 2017
7MGT
DownloadVisualize
BU of 7mgt by Molmil
Ftp from Treponema pallidum bound to an ADP-like inhibitor
Descriptor: 1,2-ETHANEDIOL, 2-chloroadenosine 5'-(trihydrogen diphosphate), FAD:protein FMN transferase, ...
Authors:Brautigam, C.A, Deka, R, Norgard, M.V.
Deposit date:2021-04-13
Release date:2021-12-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Inhibition of bacterial FMN transferase: A potential avenue for countering antimicrobial resistance.
Protein Sci., 31, 2022
6BGD
DownloadVisualize
BU of 6bgd by Molmil
The crystal structure of the W145A variant of TpMglB-2 (Tp0684) with bound ligand
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Glucose/galactose-binding lipoprotein
Authors:Brautigam, C.A, Norgard, M.V, Deka, R.K.
Deposit date:2017-10-27
Release date:2018-01-31
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Crystal structures of MglB-2 (TP0684), a topologically variant d-glucose-binding protein from Treponema pallidum, reveal a ligand-induced conformational change.
Protein Sci., 27, 2018
6BGC
DownloadVisualize
BU of 6bgc by Molmil
The crystal structure of the W145A variant of TpMglB-2 (Tp0684) with bound glucose
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Glucose/galactose-binding lipoprotein, ...
Authors:Brautigam, C.A, Norgard, M.V, Deka, R.K.
Deposit date:2017-10-27
Release date:2018-01-31
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.082 Å)
Cite:Crystal structures of MglB-2 (TP0684), a topologically variant d-glucose-binding protein from Treponema pallidum, reveal a ligand-induced conformational change.
Protein Sci., 27, 2018
6DET
DownloadVisualize
BU of 6det by Molmil
The crystal structure of Tv2483 bound to L-arginine
Descriptor: ARGININE, Tv2483
Authors:Brautigam, C.A, Norgard, M.V.
Deposit date:2018-05-13
Release date:2019-03-20
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Biophysical insights into a highly selective l-arginine-binding lipoprotein of a pathogenic treponeme.
Protein Sci., 27, 2018
5JX2
DownloadVisualize
BU of 5jx2 by Molmil
Crystal structure of MglB-2 (Tp0684) from Treponema pallidum
Descriptor: 1,2-ETHANEDIOL, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, ...
Authors:Brautigam, C.A, Deka, R.K, Norgard, M.V.
Deposit date:2016-05-12
Release date:2016-08-31
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.0504 Å)
Cite:The Tp0684 (MglB-2) Lipoprotein of Treponema pallidum: A Glucose-Binding Protein with Divergent Topology.
Plos One, 11, 2016
1XS5
DownloadVisualize
BU of 1xs5 by Molmil
The Crystal Structure of Lipoprotein Tp32 from Treponema pallidum
Descriptor: METHIONINE, Membrane lipoprotein TpN32
Authors:Deka, R.K, Neil, L, Hagman, K.E, Machius, M, Tomchick, D.R, Brautigam, C.A, Norgard, M.V.
Deposit date:2004-10-18
Release date:2004-11-23
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural evidence that the 32-kilodalton lipoprotein (Tp32) of Treponema pallidum is an L-methionine-binding protein
J.Biol.Chem., 279, 2004
4XHF
DownloadVisualize
BU of 4xhf by Molmil
Crystal structure of Shewanella oneidensis NqrC
Descriptor: FLAVIN MONONUCLEOTIDE, Na-translocating NADH-quinone reductase subunit C NqrC, SODIUM ION
Authors:Tomchick, D.R, Brautigam, C.A, Deka, R.K, Norgard, M.V.
Deposit date:2015-01-05
Release date:2015-12-16
Last modified:2016-03-16
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Molecular insights into the enzymatic diversity of flavin-trafficking protein (Ftp; formerly ApbE) in flavoprotein biogenesis in the bacterial periplasm.
Microbiologyopen, 5, 2016
4XGV
DownloadVisualize
BU of 4xgv by Molmil
Crystal structure of Escherichia coli Flavin trafficking protein, an FMN transferase
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CALCIUM ION, ...
Authors:Tomchick, D.R, Brautigam, C.A, Deka, R.K, Norgard, M.V.
Deposit date:2015-01-02
Release date:2015-12-16
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.883 Å)
Cite:Molecular insights into the enzymatic diversity of flavin-trafficking protein (Ftp; formerly ApbE) in flavoprotein biogenesis in the bacterial periplasm.
Microbiologyopen, 5, 2016
4XDT
DownloadVisualize
BU of 4xdt by Molmil
Crystal structure of Treponema pallidum TP0796 Flavin trafficking protein, a bifunctional FMN transferase/FAD pyrophosphatase, N55Y mutant, FAD bound form
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, FAD:protein FMN transferase, ...
Authors:Tomchick, D.R, Brautigam, C.A, Deka, R.K, Norgard, M.V.
Deposit date:2014-12-19
Release date:2015-10-14
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.452 Å)
Cite:Evidence for Posttranslational Protein Flavinylation in the Syphilis Spirochete Treponema pallidum: Structural and Biochemical Insights from the Catalytic Core of a Periplasmic Flavin-Trafficking Protein.
Mbio, 6, 2015
4DI3
DownloadVisualize
BU of 4di3 by Molmil
Crystal structure of a 2:1 complex of Treponema pallidum TatP(T) (Tp0957) bound to TatT (Tp0956)
Descriptor: TatP(T) (Tp0957), TatT (Tp0956)
Authors:Brautigam, C.A, Deka, R.K, Norgard, M.V.
Deposit date:2012-01-30
Release date:2012-05-23
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Structural and Thermodynamic Characterization of the Interaction between Two Periplasmic Treponema pallidum Lipoproteins that are Components of a TPR-Protein-Associated TRAP Transporter (TPAT).
J.Mol.Biol., 420, 2012

 

12>

225158

PDB entries from 2024-09-18

PDB statisticsPDBj update infoContact PDBjnumon