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1FUS
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CRYSTAL STRUCTURES OF RIBONUCLEASE F1 OF FUSARIUM MONILIFORME IN ITS FREE FORM AND IN COMPLEX WITH 2'GMP
Descriptor:RIBONUCLEASE F1
Authors:Katayanagi, K., Vassylyev, D.G., Ishikawa, K., Morikawa, K.
Deposit date:1993-01-18
Release date:1993-10-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Crystal structures of ribonuclease F1 of Fusarium moniliforme in its free form and in complex with 2'GMP.
J.Mol.Biol., 230, 1993
1X2I
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CRYSTAL STRUCTURE OF ARCHAEAL XPF/MUS81 HOMOLOG, HEF FROM PYROCOCCUS FURIOSUS, HELIX-HAIRPIN-HELIX DOMAIN
Descriptor:Hef helicase/nuclease
Authors:Nishino, T., Komori, K., Ishino, Y., Morikawa, K.
Deposit date:2005-04-24
Release date:2005-09-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural and Functional Analyses of an Archaeal XPF/Rad1/Mus81 Nuclease: Asymmetric DNA Binding and Cleavage Mechanisms
STRUCTURE, 13, 2005
2END
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CRYSTAL STRUCTURE OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME FROM BACTERIOPHAGE T4: REFINEMENT AT 1.45 ANGSTROMS AND X-RAY ANALYSIS OF THE THREE ACTIVE SITE MUTANTS
Descriptor:ENDONUCLEASE V
Authors:Vassylyev, D.G., Ariyoshi, M., Matsumoto, O., Katayanagi, K., Ohtsuka, E., Morikawa, K.
Deposit date:1994-08-08
Release date:1994-10-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal structure of a pyrimidine dimer-specific excision repair enzyme from bacteriophage T4: refinement at 1.45 A and X-ray analysis of the three active site mutants.
J.Mol.Biol., 249, 1995
2RN2
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STRUCTURAL DETAILS OF RIBONUCLEASE H FROM ESCHERICHIA COLI AS REFINED TO AN ATOMIC RESOLUTION
Descriptor:RIBONUCLEASE H
Authors:Katayanagi, K., Miyagawa, M., Matsushima, M., Ishikawa, M., Kanaya, S., Nakamura, H., Ikehara, M., Matsuzaki, T., Morikawa, K.
Deposit date:1992-04-15
Release date:1993-10-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Structural details of ribonuclease H from Escherichia coli as refined to an atomic resolution.
J.Mol.Biol., 223, 1992
3W0K
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CRYSTAL STRUCTURE OF A GLYCOSIDE HYDROLASE
Descriptor:Bifunctional endomannanase/endoglucanase, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Authors:Oyama, T., Nakamura, H., Morikawa, K., Cann, I.K.O.
Deposit date:2012-10-31
Release date:2013-02-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of a glycoside hydrolase
To be Published
2DQU
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CRYSTAL FORM II: HIGH RESOLUTION CRYSTAL STRUCTURE OF THE COMPLEX OF THE HYDROLYTIC ANTIBODY FAB 6D9 AND A TRANSITION-STATE ANALOG
Descriptor:IMMUNOGLOBULIN 6D9, [1-(3-DIMETHYLAMINO-PROPYL)-3-ETHYL-UREIDO]-[4-(2,2,2-TRIFLUORO-ACETYLAMINO)-BENZYL]PHOSPHINIC ACID-2-(2,2-DIHYDRO-ACETYLAMINO)-3-HYDROXY-1-(4-NITROPHENYL)-PROPYL ESTER
Authors:Kristensen, O., Vassylyev, D.G., Tanaka, F., Ito, N., Morikawa, K., Fujii, I.
Deposit date:2006-05-30
Release date:2006-06-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Thermodynamic and structural basis for transition-state stabilization in antibody-catalyzed hydrolysis
J.Mol.Biol., 369, 2007
2DG1
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CRYSTAL STRUCTURE OF DRP35, A 35KDA DRUG RESPONSIVE PROTEIN FROM STAPHYLOCOCCUS AUREUS, COMPLEXED WITH CA2+
Descriptor:DrP35, CALCIUM ION, GLYCEROL
Authors:Tanaka, Y., Ohki, Y., Morikawa, K., Yao, M., Watanabe, N., Ohta, T., Tanaka, I.
Deposit date:2006-03-07
Release date:2006-12-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Structural and Mutational Analyses of Drp35 from Staphylococcus aureus: A POSSIBLE MECHANISM FOR ITS LACTONASE ACTIVITY
J.Biol.Chem., 282, 2007
3VI8
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HUMAN PPAR ALPHA LIGAND BINDING DOMAIN IN COMPLEX WITH A SYNTHETIC AGONIST APHM13
Descriptor:Peroxisome proliferator-activated receptor alpha, (2S)-2-(4-methoxy-3-{[(pyren-1-ylcarbonyl)amino]methyl}benzyl)butanoic acid
Authors:Oyama, T., Miyachi, H., Morikawa, K.
Deposit date:2011-09-25
Release date:2012-08-29
Last modified:2016-03-02
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Peroxisome proliferator-activated receptors (PPARs) have multiple binding points that accommodate ligands in various conformations: phenylpropanoic acid-type PPAR ligands bind to PPAR in different conformations, depending on the subtype
J.Med.Chem., 55, 2012
1J23
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CRYSTAL STRUCTURE OF ARCHAEAL XPF/MUS81 HOMOLOG, HEF FROM PYROCOCCUS FURIOSUS, NUCLEASE DOMAIN
Descriptor:ATP-dependent RNA helicase, putative
Authors:Nishino, T., Komori, K., Ishino, Y., Morikawa, K.
Deposit date:2002-12-25
Release date:2003-04-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:X-Ray and Biochemical Anatomy of an Archaeal XPF/Rad1/Mus81 Family Nuclease. Similarity between Its Endonuclease Domain and Restriction Enzymes
Structure, 11, 2003
1J24
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CRYSTAL STRUCTURE OF ARCHAEAL XPF/MUS81 HOMOLOG, HEF FROM PYROCOCCUS FURIOSUS, NUCLEASE DOMAIN, CA COCRYSTAL
Descriptor:ATP-dependent RNA helicase, putative, CALCIUM ION
Authors:Nishino, T., Komori, K., Ishino, Y., Morikawa, K.
Deposit date:2002-12-25
Release date:2003-04-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:X-Ray and Biochemical Anatomy of an Archaeal XPF/Rad1/Mus81 Family Nuclease. Similarity between Its Endonuclease Domain and Restriction Enzymes
Structure, 11, 2003
1J25
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CRYSTAL STRUCTURE OF ARCHAEAL XPF/MUS81 HOMOLOG, HEF FROM PYROCOCCUS FURIOSUS, NUCLEASE DOMAIN, MN COCRYSTAL
Descriptor:ATP-dependent RNA helicase, putative, MANGANESE (II) ION
Authors:Nishino, T., Komori, K., Ishino, Y., Morikawa, K.
Deposit date:2002-12-25
Release date:2003-04-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:X-Ray and Biochemical Anatomy of an Archaeal XPF/Rad1/Mus81 Family Nuclease. Similarity between Its Endonuclease Domain and Restriction Enzymes
Structure, 11, 2003
1YXJ
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CRYSTAL STRUCTURE OF HUMAN LECTIN-LIKE OXIDIZED LOW-DENSITY LIPOPROTEIN RECEPTOR 1 (LOX-1) AT LOW PH
Descriptor:oxidised low density lipoprotein (lectin-like) receptor 1, 1,2-ETHANEDIOL
Authors:Ohki, I., Ishigaki, T., Oyama, T., Matsunaga, S., Xie, Q., Ohnishi-Kameyama, M., Murata, T., Tsuchiya, D., Machida, S., Morikawa, K., Tate, S.
Deposit date:2005-02-22
Release date:2005-06-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Crystal structure of human lectin-like, oxidized low-density lipoprotein receptor 1 ligand binding domain and its ligand recognition mode to OxLDL.
Structure, 13, 2005
1ENJ
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CRYSTAL STRUCTURE OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME FROM BACTERIOPHAGE T4: REFINEMENT AT 1.45 ANGSTROMS AND X-RAY ANALYSIS OF THE THREE ACTIVE SITE MUTANTS
Descriptor:ENDONUCLEASE V
Authors:Vassylyev, D.G., Ariyoshi, M., Matsumoto, O., Katayanagi, K., Ohtsuka, E., Morikawa, K.
Deposit date:1994-08-08
Release date:1994-10-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of a pyrimidine dimer-specific excision repair enzyme from bacteriophage T4: refinement at 1.45 A and X-ray analysis of the three active site mutants.
J.Mol.Biol., 249, 1995
1IZ5
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PYROCOCCUS FURIOSUS PCNA MUTANT (MET73LEU, ASP143ALA, ASP147ALA): ORTHORHOMBIC FORM
Descriptor:Proliferating cell nuclear antigen
Authors:Matsumiya, S., Ishino, S., Ishino, Y., Morikawa, K.
Deposit date:2002-09-23
Release date:2003-04-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Intermolecular ion pairs maintain the toroidal structure of Pyrococcus furiosus PCNA
PROTEIN SCI., 12, 2003
1J09
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CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS GLUTAMYL-TRNA SYNTHETASE COMPLEXED WITH ATP AND GLU
Descriptor:Glutamyl-tRNA synthetase, MAGNESIUM ION, GLUTAMIC ACID, ...
Authors:Sekine, S., Nureki, O., Dubois, D.Y., Bernier, S., Chenevert, R., Lapointe, J., Vassylyev, D.G., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-11-12
Release date:2003-02-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:ATP binding by glutamyl-tRNA synthetase is switched to the productive mode by tRNA binding
EMBO J., 22, 2003
1J22
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CRYSTAL STRUCTURE OF ARCHAEAL XPF/MUS81 HOMOLOG, HEF FROM PYROCOCCUS FURIOSUS, NUCLEASE DOMAIN, SELENOMET DERIVATIVE
Descriptor:ATP-dependent RNA helicase, putative
Authors:Nishino, T., Komori, K., Ishino, Y., Morikawa, K.
Deposit date:2002-12-25
Release date:2003-04-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:X-Ray and Biochemical Anatomy of an Archaeal XPF/Rad1/Mus81 Family Nuclease. Similarity between Its Endonuclease Domain and Restriction Enzymes
Structure, 11, 2003
1KVA
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E. COLI RIBONUCLEASE HI D134A MUTANT
Descriptor:RIBONUCLEASE H
Authors:Kashiwagi, T., Jeanteur, D., Haruki, M., Katayanagi, K., Kanaya, S., Morikawa, K.
Deposit date:1996-10-04
Release date:1997-03-12
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Proposal for new catalytic roles for two invariant residues in Escherichia coli ribonuclease HI.
Protein Eng., 9, 1996
1KVD
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KILLER TOXIN FROM HALOTOLERANT YEAST
Descriptor:SMK TOXIN, SULFATE ION
Authors:Kashiwagi, T., Kunishima, N., Suzuki, C., Tsuchiya, F., Nikkuni, S., Arata, Y., Morikawa, K.
Deposit date:1996-10-04
Release date:1997-04-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The novel acidophilic structure of the killer toxin from halotolerant yeast demonstrates remarkable folding similarity with a fungal killer toxin.
Structure, 5, 1997
1KVE
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KILLER TOXIN FROM HALOTOLERANT YEAST
Descriptor:SMK TOXIN
Authors:Kashiwagi, T., Kunishima, N., Suzuki, C., Tsuchiya, F., Nikkuni, S., Arata, Y., Morikawa, K.
Deposit date:1996-10-04
Release date:1997-04-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The novel acidophilic structure of the killer toxin from halotolerant yeast demonstrates remarkable folding similarity with a fungal killer toxin.
Structure, 5, 1997
1LAV
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STABILIZATION OF ESCHERICHIA COLI RIBONUCLEASE HI BY CAVITY-FILLING MUTATIONS WITHIN A HYDROPHOBIC CORE
Descriptor:RIBONUCLEASE H
Authors:Ishikawa, K., Nakamura, H., Morikawa, K., Kanaya, S.
Deposit date:1993-05-10
Release date:1993-10-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Stabilization of Escherichia coli ribonuclease HI by cavity-filling mutations within a hydrophobic core.
Biochemistry, 32, 1993
1LAW
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STABILIZATION OF ESCHERICHIA COLI RIBONUCLEASE HI BY CAVITY-FILLING MUTATIONS WITHIN A HYDROPHOBIC CORE
Descriptor:RIBONUCLEASE H
Authors:Ishikawa, K., Nakamura, H., Morikawa, K., Kanaya, S.
Deposit date:1993-05-10
Release date:1993-10-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Stabilization of Escherichia coli ribonuclease HI by cavity-filling mutations within a hydrophobic core.
Biochemistry, 32, 1993
1LHM
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THE CRYSTAL STRUCTURE OF A MUTANT LYSOZYME C77(SLASH)95A WITH INCREASED SECRETION EFFICIENCY IN YEAST
Descriptor:HUMAN LYSOZYME
Authors:Inaka, K., Matsushima, M.
Deposit date:1991-10-02
Release date:1992-04-15
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The crystal structure of a mutant human lysozyme C77/95A with increased secretion efficiency in yeast.
J.Biol.Chem., 266, 1991
1LZ4
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ENTHALPIC DESTABILIZATION OF A MUTANT HUMAN LYSOZYME LACKING A DISULFIDE BRIDGE BETWEEN CYSTEINE-77 AND CYSTEINE-95
Descriptor:HUMAN LYSOZYME
Authors:Inaka, K., Matsushima, M., Kuroki, R., Taniyama, Y., Kikuchi, M.
Deposit date:1993-02-03
Release date:1993-10-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Enthalpic destabilization of a mutant human lysozyme lacking a disulfide bridge between cysteine-77 and cysteine-95.
Biochemistry, 31, 1992
1LZ5
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STRUCTURAL AND FUNCTIONAL ANALYSES OF THE ARG-GLY-ASP SEQUENCE INTRODUCED INTO HUMAN LYSOZYME
Descriptor:HUMAN LYSOZYME, CHLORIDE ION
Authors:Matsushima, M., Inaka, K., Yamada, T., Sekiguchi, K., Kikuchi, M.
Deposit date:1993-02-03
Release date:1993-10-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural and functional analyses of the Arg-Gly-Asp sequence introduced into human lysozyme.
J.Biol.Chem., 268, 1993
1LZ6
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STRUCTURAL AND FUNCTIONAL ANALYSES OF THE ARG-GLY-ASP SEQUENCE INTRODUCED INTO HUMAN LYSOZYME
Descriptor:HUMAN LYSOZYME, CHLORIDE ION
Authors:Matsushima, M., Inaka, K., Yamada, T., Sekiguchi, K., Kikuchi, M.
Deposit date:1993-02-03
Release date:1993-10-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural and functional analyses of the Arg-Gly-Asp sequence introduced into human lysozyme.
J.Biol.Chem., 268, 1993