Author results

5X9Y
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CRYSTAL STRUCTURE OF THE ATPASE DOMAIN FROM BACTERIAL MISMATCH REPAIR ENDONUCLEASE AQUIFEX AEOLICUS MUTL.
Descriptor:DNA mismatch repair protein MutL, DI(HYDROXYETHYL)ETHER
Authors:Fukui, K., Yano, T.
Deposit date:2017-03-10
Release date:2017-08-30
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (3.443 Å)
Cite:Crystal structure and DNA-binding property of the ATPase domain of bacterial mismatch repair endonuclease MutL from Aquifex aeolicus
Biochim. Biophys. Acta, 1865, 2017
5H70
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CRYSTAL STRUCTURE OF ADP BOUND DTMP KINASE (ST1543) FROM SULFOLOBUS TOKODAII STRAIN7
Descriptor:Probable thymidylate kinase, ADENOSINE-5'-DIPHOSPHATE, 1,2-ETHANEDIOL, ...
Authors:Biswas, A., Jeyakanthan, J., Sekar, K., Kuramitsu, S., Yokoyama, S.
Deposit date:2016-11-15
Release date:2016-12-07
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of ADP bound dTMP kinase (st1543) from Sulfolobus Tokodaii Strain7
To Be Published
5H56
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ADP AND DTDP BOUND CRYSTAL STRUCTURE OF THYMIDYLATE KINASE (AQ_969) FROM AQUIFEX AEOLICUS VF5
Descriptor:Thymidylate kinase, ADENOSINE-5'-DIPHOSPHATE, THYMIDINE-5'-DIPHOSPHATE, ...
Authors:Biswas, A., Jeyakanthan, J., Sekar, K., Kuramitsu, S., Yokoyama, S.
Deposit date:2016-11-04
Release date:2017-06-28
Last modified:2017-08-30
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural studies of a hyperthermophilic thymidylate kinase enzyme reveal conformational substates along the reaction coordinate
FEBS J., 284, 2017
5H45
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CRYSTAL STRUCTURE OF THE C-TERMINAL LON PROTEASE-LIKE DOMAIN OF THERMUS THERMOPHILUS RADA/SMS
Descriptor:DNA repair protein RadA
Authors:Inoue, M., Fukui, K., Fujii, Y., Nakagawa, N., Yano, T., Kuramitsu, S., Masui, R.
Deposit date:2016-10-30
Release date:2017-05-03
Last modified:2017-06-21
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The Lon protease-like domain in the bacterial RecA paralog RadA is required for DNA binding and repair.
J. Biol. Chem., 292, 2017
5BJ4
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THERMUS THERMOPHILUS ASPARTATE AMINOTRANSFERASE TETRA MUTANT 2
Descriptor:PROTEIN (ASPARTATE AMINOTRANSFERASE), PHOSPHATE ION, PYRIDOXAL-5'-PHOSPHATE
Authors:Ura, H., Nakai, T., Kawaguchi, S.I., Miyahara, I., Hirotsu, K., Kuramitsu, S.
Deposit date:1999-01-11
Release date:2003-09-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Substrate recognition mechanism of thermophilic dual-substrate enzyme
J.BIOCHEM.(TOKYO), 130, 2001
5BJ3
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THERMUS THERMOPHILUS ASPARTATE AMINOTRANSFERASE TETRA MUTANT 1
Descriptor:PROTEIN (ASPARTATE AMINOTRANSFERASE), PYRIDOXAL-5'-PHOSPHATE
Authors:Ura, H., Nakai, T., Kawaguchi, S.I., Miyahara, I., Hirotsu, K., Kuramitsu, S.
Deposit date:1999-01-11
Release date:2003-09-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Substrate recognition mechanism of thermophilic dual-substrate enzyme
J.BIOCHEM.(TOKYO), 130, 2001
5AWE
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CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN, TTHA0829 FROM THERMUS THERMOPHILUS HB8, COMPOSED OF CYSTATHIONINE-BETA-SYNTHASE (CBS) AND ASPARTATE-KINASE CHORISMATE-MUTASE TYRA (ACT) DOMAINS
Descriptor:Putative acetoin utilization protein, acetoin dehydrogenase
Authors:Nakabayashi, M., Shibata, N., Kanagawa, M., Nakagawa, N., Kuramitsu, S., Higuchi, Y.
Deposit date:2015-07-03
Release date:2016-05-18
Last modified:2016-09-28
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Crystal structure of a hypothetical protein, TTHA0829 from Thermus thermophilus HB8, composed of cystathionine-beta-synthase (CBS) and aspartate-kinase chorismate-mutase tyrA (ACT) domains.
Extremophiles, 20, 2016
5AVM
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CRYSTAL STRUCTURES OF 5-AMINOIMIDAZOLE RIBONUCLEOTIDE (AIR) SYNTHETASE, PURM, FROM THERMUS THERMOPHILUS
Descriptor:Phosphoribosylformylglycinamidine cyclo-ligase, SULFATE ION
Authors:Kanagawa, M., Baba, S., Watanabe, Y., Nakagawa, N., Ebihara, A., Sampei, G., Kawai, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2015-06-23
Release date:2015-11-25
Last modified:2016-03-09
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures and ligand binding of PurM proteins from Thermus thermophilus and Geobacillus kaustophilus
J.Biochem., 159, 2016
4WBX
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CONSERVED HYPOTHETICAL PROTEIN PF1771 FROM PYROCOCCUS FURIOSUS SOLVED BY SULFUR SAD USING SWISS LIGHT SOURCE DATA
Descriptor:2-keto acid:ferredoxin oxidoreductase subunit alpha
Authors:Weinert, T., Waltersperger, S., Olieric, V., Panepucci, E., Chen, L., Rose, J.P., Wang, M., Wang, B.C., Southeast Collaboratory for Structural Genomics (SECSG)
Deposit date:2014-09-04
Release date:2014-12-10
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.301 Å)
Cite:Fast native-SAD phasing for routine macromolecular structure determination.
Nat.Methods, 12, 2015
4WBQ
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CRYSTAL STRUCTURE OF THE EXONUCLEASE DOMAIN OF QIP (QDE-2 INTERACTING PROTEIN) SOLVED BY NATIVE-SAD PHASING.
Descriptor:QDE-2-interacting protein, CALCIUM ION
Authors:Boland, A., Weinert, T., Weichenrieder, O., Wang, M.
Deposit date:2014-09-03
Release date:2014-12-10
Last modified:2015-02-11
Method:X-RAY DIFFRACTION (2.693 Å)
Cite:Fast native-SAD phasing for routine macromolecular structure determination.
Nat.Methods, 12, 2015
4WAU
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CRYSTAL STRUCTURE OF CENP-M SOLVED BY NATIVE-SAD PHASING
Descriptor:Centromere protein M
Authors:Weinert, T., Basilico, F., Cecatiello, V., Pasqualato, S., Wang, M.
Deposit date:2014-09-01
Release date:2014-12-10
Last modified:2015-02-11
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Fast native-SAD phasing for routine macromolecular structure determination.
Nat.Methods, 12, 2015
4WAB
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CRYSTAL STRUCTURE OF MPGES1 SOLVED BY NATIVE-SAD PHASING
Descriptor:Prostaglandin E synthase,Leukotriene C4 synthase, GLUTATHIONE, 2-[[2,6-bis(chloranyl)-3-[(2,2-dimethylpropanoylamino)methyl]phenyl]amino]-1-methyl-6-(2-methyl-2-oxidanyl-propoxy)-N-[2,2,2-tris(fluoranyl)ethyl]benzimidazole-5-carboxamide
Authors:Weinert, T., Li, D., Howe, N., Caffrey, M., Wang, M.
Deposit date:2014-08-29
Release date:2014-12-10
Last modified:2015-02-11
Method:X-RAY DIFFRACTION (2.704 Å)
Cite:Fast native-SAD phasing for routine macromolecular structure determination.
Nat.Methods, 12, 2015
4TNO
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HYPOTHETICAL PROTEIN PF1117 FROM PYROCOCCUS FURIOSUS: STRUCTURE SOLVED BY SULFUR-SAD USING SWISS LIGHT SOURCE DATA
Descriptor:CRISPR-associated endoribonuclease Cas2, CHLORIDE ION
Authors:Weinert, T., Waltersperger, S., Olieric, V., Panepucci, E., Chen, L., Rose, J.P., Wang, M., Wang, B.C., Southeast Collaboratory for Structural Genomics (SECSG)
Deposit date:2014-06-04
Release date:2014-12-10
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Fast native-SAD phasing for routine macromolecular structure determination.
Nat.Methods, 12, 2015
4TN8
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CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS THIOREDOXIN SOLVED BY SULFUR SAD USING SWISS LIGHT SOURCE DATA
Descriptor:Thioredoxin, CHLORIDE ION
Authors:Weinert, T., Waltersperger, S., Olieric, V., Panepucci, E., Chen, L., Rose, J.P., Wang, M., Wang, B.C., Southeast Collaboratory for Structural Genomics (SECSG)
Deposit date:2014-06-03
Release date:2014-12-10
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Fast native-SAD phasing for routine macromolecular structure determination.
Nat.Methods, 12, 2015
4S35
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AMPPCP AND TMP BOUND CRYSTAL STRUCTURE OF THYMIDYLATE KINASE (AQ_969) FROM AQUIFEX AEOLICUS VF5
Descriptor:Thymidylate kinase, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, THYMIDINE-5'-PHOSPHATE, ...
Authors:Biswas, A., Jeyakanthan, J., Sekar, K., Kuramitsu, S., Yokoyama, S.
Deposit date:2015-01-26
Release date:2016-01-27
Last modified:2017-06-28
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural studies of a hyperthermophilic Thymidylate Kinase enzyme reveal conformational sub-states along the reaction coordinate
Febs J., 2017
4RZU
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CRYSTAL STRUCTURE OF ADP BOUND DTMP KINASE (ST1543) FROM SULFOLOBUS TOKODAII STRAIN7
Descriptor:Probable thymidylate kinase, ADENOSINE-5'-DIPHOSPHATE, 1,2-ETHANEDIOL, ...
Authors:Biswas, A., Jeyakanthan, J., Sekar, K., Kuramitsu, S., Yokoyama, S.
Deposit date:2014-12-24
Release date:2015-12-30
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of ADP bound dTMP kinase (st1543) from Sulfolobus Tokodaii Strain7
To be Published
4R8U
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S-SAD STRUCTURE OF DINB-DNA COMPLEX
Descriptor:DNA polymerase IV, DNA, MAGNESIUM ION, ...
Authors:Kottur, J., Nair, D.T., Weinert, T., Oligeric, V., Wang, M.
Deposit date:2014-09-03
Release date:2015-01-14
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Fast native-SAD phasing for routine macromolecular structure determination
Nat.Methods, 12, 2015
4R8T
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STRUCTURE OF JEV PROTEASE
Descriptor:Serine protease subunit NS2B, NS3, CHLORIDE ION
Authors:Nair, D.T., Weinert, T., Wang, M., Olieric, V.
Deposit date:2014-09-03
Release date:2014-12-24
Last modified:2015-08-12
Method:X-RAY DIFFRACTION (2.133 Å)
Cite:Fast native-SAD phasing for routine macromolecular structure determination.
Nat.Methods, 12, 2015
4PII
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CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN PF0907 FROM PYROCOCCUS FURIOSUS SOLVED BY SULFUR SAD USING SWISS LIGHT SOURCE DATA
Descriptor:N-glycosylase/DNA lyase, CHLORIDE ION, IMIDAZOLE
Authors:Weinert, T., Waltersperger, S., Olieric, V., Panepucci, E., Chen, L., Rose, J.P., Wang, M., Wang, B.C., Southeast Collaboratory for Structural Genomics (SECSG)
Deposit date:2014-05-08
Release date:2014-12-10
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Fast native-SAD phasing for routine macromolecular structure determination.
Nat.Methods, 12, 2015
4PGO
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CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN PF0907 FROM PYROCOCCUS FURIOSUS SOLVED BY SULFUR SAD USING SWISS LIGHT SOURCE DATA
Descriptor:Uncharacterized protein, CHLORIDE ION
Authors:Weinert, T., Waltersperger, S., Olieric, V., Panepucci, E., Chen, L., Rose, J.P., Wang, M., Wang, B.C., Southeast Collaboratory for Structural Genomics (SECSG)
Deposit date:2014-05-02
Release date:2014-12-10
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Fast native-SAD phasing for routine macromolecular structure determination.
Nat.Methods, 12, 2015
4NZY
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CRYSTAL STRUCTURE (TYPE-2) OF DTMP KINASE (ST1543) FROM SULFOLOBUS TOKODAII STRAIN7
Descriptor:Probable thymidylate kinase, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, PHOSPHATE ION, ...
Authors:Biswas, A., Jeyakanthan, J., Sekar, K., Kuramitsu, S., Yokoyama, S.
Deposit date:2013-12-13
Release date:2014-12-24
Last modified:2015-08-12
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Insight into Substrate Binding Mechanism in Thymidylate Kinase based on Intrinsic Dynamics of the Active Site
To be Published
4E1B
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RE-REFINEMENT OF PDB ENTRY 2EQA - SUA5 PROTEIN FROM SULFOLOBUS TOKODAII WITH BOUND THREONYLCARBAMOYLADENYLATE
Descriptor:YrdC/Sua5 family protein, MAGNESIUM ION, threonylcarbamoyladenylate
Authors:Parthier, C., Goerlich, S., Jaenecke, F., Breithaupt, C., Braeuer, U., Fandrich, U., Clausnitzer, D., Wehmeier, U.F., Boettcher, C., Scheel, D., Stubbs, M.T.
Deposit date:2012-03-06
Release date:2012-03-14
Last modified:2012-05-02
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The O-Carbamoyltransferase TobZ Catalyzes an Ancient Enzymatic Reaction.
Angew.Chem.Int.Ed.Engl., 51, 2012
3W90
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CRYSTAL STRUCTURE OF CMP KINASE FROM THERMUS THERMOPHILUS HB8
Descriptor:Cytidylate kinase
Authors:Nakagawa, N., Mega, R., Masui, R., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2013-03-22
Release date:2013-09-25
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure of CMP kinase: insights into initial substrate recognition and reaction mechanisms
To be Published
3W8R
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MUTANT STRUCTURE OF THERMUS THERMOPHILUS HB8 URIDINE-CYTIDINE KINASE
Descriptor:Uridine kinase, 4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
Authors:Tomoike, F., Nakagawa, N., Masui, R., Kuramitsu, S.
Deposit date:2013-03-21
Release date:2014-03-26
Last modified:2017-08-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Indispensable residue for uridine binding in the uridine-cytidine kinase family
Biochem Biophys Rep, 11, 2017
3W8N
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OPEN FORM STRUCTURE OF CMP KINASE IN COMPLEX WITH CMP FROM THERMUS THERMOPHILUS HB8
Descriptor:Cytidylate kinase, CYTIDINE-5'-MONOPHOSPHATE
Authors:Nakagawa, N., Mega, R., Masui, R., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2013-03-19
Release date:2013-09-25
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of CMP kinase: insights into initial substrate recognition and reaction mechanisms
To be Published