Author results

3VN3
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FUNGAL ANTIFREEZE PROTEIN EXERTS HYPERACTIVITY BY CONSTRUCTING AN INEQUABLE BETA-HELIX
Descriptor:Antifreeze protein, 1,2-ETHANEDIOL
Authors:Kondo, H., Xiao, N., Hanada, Y., Sugimoto, H., Hoshino, T., Garnham, C.P., Davies, P.L., Tsuda, S.
Deposit date:2011-12-21
Release date:2012-06-06
Last modified:2013-07-17
Method:X-RAY DIFFRACTION (0.95 Å)
Cite:Ice-binding site of snow mold fungus antifreeze protein deviates from structural regularity and high conservation
Proc.Natl.Acad.Sci.USA, 109, 2012
5XQV
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CRYSTAL STRUCTURE OF NOTCHED-FIN EELPOUT TYPE III ANTIFREEZE PROTEIN A20L MUTANT (NFE6, AFP), P21 FORM
Descriptor:Ice-structuring protein
Authors:Adachi, M., Shimizu, R., Shibazaki, C., Kondo, H., Tsuda, S.
Deposit date:2017-06-07
Release date:2018-05-16
Last modified:2018-06-06
Method:X-RAY DIFFRACTION (0.97 Å)
Cite:Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5XR0
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CRYSTAL STRUCTURE OF NOTCHED-FIN EELPOUT TYPE III ANTIFREEZE PROTEIN A20T MUTANT (NFE6, AFP), P21 FORM
Descriptor:Ice-structuring protein
Authors:Adachi, M., Shimizu, R., Shibazaki, C., Kondo, H., Tsuda, S.
Deposit date:2017-06-07
Release date:2018-05-16
Last modified:2018-06-06
Method:X-RAY DIFFRACTION (0.98 Å)
Cite:Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5B5H
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HYDROPHOBIC ICE-BINDING SITE CONFER HYPERACTIVITY ON ANTIFREEZE PROTEIN FROM A SNOW MOLD FUNGUS
Descriptor:Antifreeze protein, SULFATE ION, SODIUM ION
Authors:Cheng, J., Hanada, Y., Miura, A., Tsuda, S., Kondo, H.
Deposit date:2016-05-06
Release date:2016-09-28
Last modified:2016-11-09
Method:X-RAY DIFFRACTION (1 Å)
Cite:Hydrophobic ice-binding sites confer hyperactivity of an antifreeze protein from a snow mold fungus.
Biochem.J., 473, 2016
5XQP
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CRYSTAL STRUCTURE OF NOTCHED-FIN EELPOUT TYPE III ANTIFREEZE PROTEIN (NFE6, AFP), P212121 FORM
Descriptor:Ice-structuring protein, SULFATE ION
Authors:Adachi, M., Shimizu, R., Shibazaki, C., Kondo, H., Tsuda, S.
Deposit date:2017-06-07
Release date:2018-05-16
Last modified:2018-06-06
Method:X-RAY DIFFRACTION (1 Å)
Cite:Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5XQU
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CRYSTAL STRUCTURE OF NOTCHED-FIN EELPOUT TYPE III ANTIFREEZE PROTEIN A20I MUTANT (NFE6, AFP), P212121 FORM
Descriptor:Ice-structuring protein
Authors:Adachi, M., Shimizu, R., Shibazaki, C., Kondo, H., Tsuda, S.
Deposit date:2017-06-07
Release date:2018-05-16
Last modified:2018-06-06
Method:X-RAY DIFFRACTION (1 Å)
Cite:Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
2CZQ
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A NOVEL CUTINASE-LIKE PROTEIN FROM CRYPTOCOCCUS SP.
Descriptor:cutinase-like protein, CITRIC ACID, 1,2-ETHANEDIOL
Authors:Masaki, K., Kamini, N.R., Ikeda, H., Iefuji, H., Kondo, H., Suzuki, M., Tsuda, S.
Deposit date:2005-07-14
Release date:2006-07-14
Last modified:2012-06-13
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Crystal structure and enhanced activity of a cutinase-like enzyme from Cryptococcus sp. strain S-2
Proteins, 77, 2009
5XQN
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CRYSTAL STRUCTURE OF NOTCHED-FIN EELPOUT TYPE III ANTIFREEZE PROTEIN (NFE6, AFP), C2221 FORM.
Descriptor:Ice-structuring protein, SULFATE ION
Authors:Adachi, M., Kondo, H., Tsuda, S.
Deposit date:2017-06-07
Release date:2018-05-16
Last modified:2018-06-06
Method:X-RAY DIFFRACTION (1.19 Å)
Cite:Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
1ISP
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CRYSTAL STRUCTURE OF BACILLUS SUBTILIS LIPASE AT 1.3A RESOLUTION
Descriptor:lipase, GLYCEROL
Authors:Kawasaki, K., Kondo, H., Suzuki, M., Ohgiya, S., Tsuda, S.
Deposit date:2001-12-19
Release date:2002-12-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Alternate conformations observed in catalytic serine of Bacillus subtilis lipase determined at 1.3 A resolution.
Acta Crystallogr.,Sect.D, 58, 2002
5XQR
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CRYSTAL STRUCTURE OF NOTCHED-FIN EELPOUT TYPE III ANTIFREEZE PROTEIN A20V MUTANT (NFE6, AFP), C2221 FORM
Descriptor:Ice-structuring protein, ACETATE ION
Authors:Adachi, M., Shimizu, R., Shibazaki, C., Kondo, H., Tsuda, S.
Deposit date:2017-06-07
Release date:2018-05-16
Last modified:2018-06-06
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
2ZIB
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CRYSTAL STRUCTURE ANALYSIS OF CALCIUM-INDEPENDENT TYPE II ANTIFREEZE PROTEIN
Descriptor:Type II antifreeze protein, SULFATE ION
Authors:Nishimiya, Y., Sato, R., Kondo, H., Noro, N., Sugimoto, H., Suzuki, M., Tsuda, S.
Deposit date:2008-02-14
Release date:2008-08-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Crystal structure and mutational analysis of Ca2+-independent type II antifreeze protein from longsnout poacher, Brachyopsis rostratus
J.Mol.Biol., 382, 2008
2DCY
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CRYSTAL STRUCTURE OF BACILLUS SUBTILIS FAMILY-11 XYLANASE
Descriptor:Endo-1,4-beta-xylanase A, 1,4-DIETHYLENE DIOXIDE, D(-)-TARTARIC ACID
Authors:Kondo, H., Miyazaki, K., Takenouchi, M., Noro, N., Suzuki, M., Tsuda, S.
Deposit date:2006-01-18
Release date:2006-02-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Thermal Stabilization of Bacillus subtilis Family-11 Xylanase by Directed Evolution
J.Biol.Chem., 281, 2006
6A8K
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CRYSTAL STRUCTURE OF ICE-BINDING PROTEIN FROM A SEA-ICE MICROALGA
Descriptor:Ice binding protein 1, GLYCEROL
Authors:Kondo, H., Bayer-Giraldi, M.
Deposit date:2018-07-09
Release date:2018-11-07
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Multiple binding modes of a moderate ice-binding protein from a polar microalga
Phys Chem Chem Phys, 20, 2018
1J05
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THE CRYSTAL STRUCTURE OF ANTI-CARCINOEMBRYONIC ANTIGEN MONOCLONAL ANTIBODY T84.66 FV FRAGMENT
Descriptor:anti-CEA mAb T84.66, light chain, heavy chain, ...
Authors:Kondo, H., Nishimura, Y., Shiroishi, M., Asano, R., Noro, N., Tsumoto, K., Kumagai, I.
Deposit date:2002-11-01
Release date:2003-12-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The crystal structure of anti-carcinoembryonic antigen monoclonal antibody T84.66 Fv fragment
To be Published
3WP9
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CRYSTAL STRUCTURE OF ANTIFREEZE PROTEIN FROM AN ANTARCTIC SEA ICE BACTERIUM COLWELLIA SP.
Descriptor:Ice-binding protein
Authors:Hanada, Y., Nishimiya, Y., Miura, A., Tsuda, S., Kondo, H.
Deposit date:2014-01-10
Release date:2014-07-02
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Hyperactive antifreeze protein from an Antarctic sea ice bacterium Colwellia sp. has a compound ice-binding site without repetitive sequences
Febs J., 2014
1UAC
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CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT SFSF COMPLEXED WITH TURKEY WHITE LYSOZYME
Descriptor:lysozyme binding Ig kappa chain V23-J2 region, Ig VH,anti-lysozyme, Lysozyme C
Authors:Kumagai, I., Nishimiya, Y., Kondo, H., Tsumoto, K.
Deposit date:2003-03-08
Release date:2004-03-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural consequences of target epitope-directed functional alteration of an antibody. The case of anti-hen lysozyme antibody, HyHEL-10
J.BIOL.CHEM., 278, 2003
2D7T
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CRYSTAL STRUCTURE OF HUMAN ANTI POLYHYDROXYBUTYRATE ANTIBODY FV
Descriptor:anti polyhydroxybutyrate antibody Fv, heavy chain, light chain
Authors:Watanabe, H.
Deposit date:2005-11-29
Release date:2006-12-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A human antibody fragment with high affinity for the biodegradable polymer film
To be Published
2YQU
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CRYSTAL STRUCTURES AND EVOLUTIONARY RELATIONSHIP OF TWO DIFFERENT LIPOAMIDE DEHYDROGENASE(E3S) FROM THERMUS THERMOPHILUS
Descriptor:2-oxoglutarate dehydrogenase E3 component, CARBONATE ION, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Kondo, H., Hossain, M.T., Adachi, W., Nakai, T., Kamiya, N., Kuramitsu, K.
Deposit date:2007-03-31
Release date:2008-04-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structures and evolutionary relationship of two different lipoamide dehydrogenase(E3s) from Thermus thermophilus
To be Published
1J1O
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CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT LY50F COMPLEXED WITH HEN EGG WHITE LYSOZYME
Descriptor:lysozyme binding Ig kappa chain V23-J2 region, Ig VH,anti-lysozyme, Lysozyme C
Authors:Yokota, A., Tsumoto, K., Shiroishi, M., Kondo, H., Kumagai, I.
Deposit date:2002-12-13
Release date:2003-01-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Role of Hydrogen Bonding via Interfacial Water Molecules in Antigen-Antibody Complexation. THE HyHEL-10-HEL INTERACTION
J.BIOL.CHEM., 278, 2003
1J1P
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CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT LS91A COMPLEXED WITH HEN EGG WHITE LYSOZYME
Descriptor:lysozyme binding Ig kappa chain V23-J2 region, Ig VH,anti-lysozyme, Lysozyme C
Authors:Yokota, A., Tsumoto, K., Shiroishi, M., Kondo, H., Kumagai, I.
Deposit date:2002-12-13
Release date:2003-01-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Role of Hydrogen Bonding via Interfacial Water Molecules in Antigen-Antibody Complexation. THE HyHEL-10-HEL INTERACTION
J.BIOL.CHEM., 278, 2003
1J1X
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CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT LS93A COMPLEXED WITH HEN EGG WHITE LYSOZYME
Descriptor:lysozyme binding Ig kappa chain V23-J2 region, Ig VH,anti-lysozyme, Lysozyme C
Authors:Yokota, A., Tsumoto, K., Shiroishi, M., Kondo, H., Kumagai, I.
Deposit date:2002-12-20
Release date:2003-01-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Role of Hydrogen Bonding via Interfacial Water Molecules in Antigen-Antibody Complexation. THE HyHEL-10-HEL INTERACTION
J.BIOL.CHEM., 278, 2003
2DQC
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CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT(HY33F) COMPLEXED WITH HEN EGG LYSOZYME
Descriptor:lysozyme binding Ig kappa chain V23-J2 region, Ig VH,anti-lysozyme, Lysozyme C
Authors:Shiroishi, M., Kondo, H., Tsumoto, K., Kumagai, I.
Deposit date:2006-05-25
Release date:2007-01-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural consequences of mutations in interfacial Tyr residues of a protein antigen-antibody complex. The case of HyHEL-10-HEL
J.Biol.Chem., 282, 2007
2DQD
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CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT (HY50F) COMPLEXED WITH HEN EGG LYSOZYME
Descriptor:lysozyme binding Ig kappa chain V23-J2 region, Ig VH,anti-lysozyme, Lysozyme C
Authors:Shiroishi, M., Kondo, H., Tsumoto, K., Kumagai, I.
Deposit date:2006-05-25
Release date:2007-01-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural consequences of mutations in interfacial Tyr residues of a protein antigen-antibody complex. The case of HyHEL-10-HEL
J.Biol.Chem., 282, 2007
2DQJ
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CRYSTAL STRUCTURE OF HYHEL-10 FV (WILD-TYPE) COMPLEXED WITH HEN EGG LYSOZYME AT 1.8A RESOLUTION
Descriptor:lysozyme binding Ig kappa chain V23-J2 region, Ig VH,anti-lysozyme, Lysozyme C
Authors:Shiroishi, M., Kondo, H., Tsumoto, K., Kumagai, I.
Deposit date:2006-05-26
Release date:2007-01-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural consequences of mutations in interfacial Tyr residues of a protein antigen-antibody complex. The case of HyHEL-10-HEL
J.Biol.Chem., 282, 2007
3A67
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CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT LN31D COMPLEXED WITH HEN EGG WHITE LYSOZYME
Descriptor:Lysozyme binding ig kappa chain V23-J2 region, IG VH, anti-lysozyme, ...
Authors:Yokota, A., Tsumoto, K., Shiroishi, M., Nakanishi, T., Kondo, H., Kumagai, I.
Deposit date:2009-08-24
Release date:2009-12-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Contribution of asparagine residues to the stabilization of a proteinaceous antigen-antibody complex, HyHEL-10-hen egg white lysozyme
J.Biol.Chem., 285, 2010
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