Author results

3VTE
  • Download 3vte
  • View 3vte
Molmil generated image of 3vte
CRYSTAL STRUCTURE OF TETRAHYDROCANNABINOLIC ACID SYNTHASE FROM CANNABIS SATIVA
Descriptor:Tetrahydrocannabinolic acid synthase, N-ACETYL-D-GLUCOSAMINE, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Shoyama, Y., Tamada, T., Kurihara, K., Takeuchi, A., Taura, F., Arai, S., Blaber, M., Shoyama, Y., Morimoto, S., Kuroki, R.
Deposit date:2012-05-28
Release date:2012-07-25
Last modified:2014-04-30
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structure and function of 1-tetrahydrocannabinolic acid (THCA) synthase, the enzyme controlling the psychoactivity of Cannabis sativa
J.Mol.Biol., 423, 2012
4Q91
  • Download 4q91
  • View 4q91
Molmil generated image of 4q91
CRYSTAL STRUCTURE OF C16A/K12V/C117V/P134V MUTANT OF HUMAN ACIDIC FIBROBLAST GROWTH FACTOR
Descriptor:Fibroblast growth factor 1, FORMIC ACID, PHOSPHATE ION
Authors:Xia, X., Blaber, M.
Deposit date:2014-04-28
Release date:2015-03-11
Method:X-RAY DIFFRACTION (1.799 Å)
Cite:Mutation choice to eliminate buried free cysteines in protein therapeutics.
J.Pharm.Sci., 104, 2015
4QKR
  • Download 4qkr
  • View 4qkr
Molmil generated image of 4qkr
CRYSTAL STRUCTURE OF 6XTYR/PV2: DE NOVO DESIGNED BETA-TREFOIL ARCHITECTURE WITH SYMMETRIC PRIMARY STRUCTURE (L22Y/L44Y/L64Y/L85Y/L108Y/L132Y, PRIMITIVE VERSION 2)
Descriptor:DE NOVO PROTEIN 6XTYR/PV2, IMIDAZOLE
Authors:Longo, L.M., Blaber, M., Tenorio, C.A.
Deposit date:2014-06-09
Release date:2015-01-14
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.746 Å)
Cite:A single aromatic core mutation converts a designed "primitive" protein from halophile to mesophile folding.
Protein Sci., 24, 2015
4QKS
  • Download 4qks
  • View 4qks
Molmil generated image of 4qks
CRYSTAL STRUCTURE OF 6XTRP/PV2: DE NOVO DESIGNED BETA-TREFOIL ARCHITECTURE WITH SYMMETRIC PRIMARY STRUCTURE (L22W/L44W/L64W/L85W/L108W/L132W HIS PRIMITIVE VERSION 2)
Descriptor:DE NOVO PROTEIN 6XTRP/PV2, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, SULFATE ION
Authors:Longo, L.M., Tenorio, C.A., Blaber, M.
Deposit date:2014-06-09
Release date:2015-01-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A single aromatic core mutation converts a designed "primitive" protein from halophile to mesophile folding.
Protein Sci., 24, 2015
9ILB
  • Download 9ilb
  • View 9ilb
Molmil generated image of 9ilb
HUMAN INTERLEUKIN-1 BETA
Descriptor:PROTEIN (HUMAN INTERLEUKIN-1 BETA)
Authors:Yu, B., Blaber, M., Gronenborn, A.M., Clore, G.M., Caspar, D.L.D.
Deposit date:1998-10-22
Release date:1999-01-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Disordered water within a hydrophobic protein cavity visualized by x-ray crystallography.
Proc.Natl.Acad.Sci.USA, 96, 1999
1DYA
  • Download 1dya
  • View 1dya
Molmil generated image of 1dya
DETERMINATION OF ALPHA-HELIX PROPENSITY WITHIN THE CONTEXT OF A FOLDED PROTEIN: SITES 44 AND 131 IN BACTERIOPHAGE T4 LYSOZYME
Descriptor:T4 LYSOZYME, CHLORIDE ION, BETA-MERCAPTOETHANOL
Authors:Zhang, X., Matthews, B.W.
Deposit date:1993-05-13
Release date:1993-10-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Determination of alpha-helix propensity within the context of a folded protein. Sites 44 and 131 in bacteriophage T4 lysozyme.
J.Mol.Biol., 235, 1994
1DYB
  • Download 1dyb
  • View 1dyb
Molmil generated image of 1dyb
DETERMINATION OF ALPHA-HELIX PROPENSITY WITHIN THE CONTEXT OF A FOLDED PROTEIN: SITES 44 AND 131 IN BACTERIOPHAGE T4 LYSOZYME
Descriptor:T4 LYSOZYME, CHLORIDE ION, BETA-MERCAPTOETHANOL
Authors:Zhang, X., Matthews, B.W.
Deposit date:1993-05-13
Release date:1993-10-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Determination of alpha-helix propensity within the context of a folded protein. Sites 44 and 131 in bacteriophage T4 lysozyme.
J.Mol.Biol., 235, 1994
1DYC
  • Download 1dyc
  • View 1dyc
Molmil generated image of 1dyc
DETERMINATION OF ALPHA-HELIX PROPENSITY WITHIN THE CONTEXT OF A FOLDED PROTEIN: SITES 44 AND 131 IN BACTERIOPHAGE T4 LYSOZYME
Descriptor:T4 LYSOZYME, CHLORIDE ION, BETA-MERCAPTOETHANOL
Authors:Zhang, X., Matthews, B.W.
Deposit date:1993-05-13
Release date:1993-10-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Determination of alpha-helix propensity within the context of a folded protein. Sites 44 and 131 in bacteriophage T4 lysozyme.
J.Mol.Biol., 235, 1994
1DYD
  • Download 1dyd
  • View 1dyd
Molmil generated image of 1dyd
DETERMINATION OF ALPHA-HELIX PROPENSITY WITHIN THE CONTEXT OF A FOLDED PROTEIN: SITES 44 AND 131 IN BACTERIOPHAGE T4 LYSOZYME
Descriptor:T4 LYSOZYME, CHLORIDE ION, BETA-MERCAPTOETHANOL
Authors:Zhang, X., Matthews, B.W.
Deposit date:1993-05-13
Release date:1993-10-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Determination of alpha-helix propensity within the context of a folded protein. Sites 44 and 131 in bacteriophage T4 lysozyme.
J.Mol.Biol., 235, 1994
1DYE
  • Download 1dye
  • View 1dye
Molmil generated image of 1dye
DETERMINATION OF ALPHA-HELIX PROPENSITY WITHIN THE CONTEXT OF A FOLDED PROTEIN: SITES 44 AND 131 IN BACTERIOPHAGE T4 LYSOZYME
Descriptor:T4 LYSOZYME, CHLORIDE ION, BETA-MERCAPTOETHANOL
Authors:Zhang, X., Matthews, B.W.
Deposit date:1993-05-13
Release date:1993-10-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Determination of alpha-helix propensity within the context of a folded protein. Sites 44 and 131 in bacteriophage T4 lysozyme.
J.Mol.Biol., 235, 1994
1DYF
  • Download 1dyf
  • View 1dyf
Molmil generated image of 1dyf
DETERMINATION OF ALPHA-HELIX PROPENSITY WITHIN THE CONTEXT OF A FOLDED PROTEIN: SITES 44 AND 131 IN BACTERIOPHAGE T4 LYSOZYME
Descriptor:T4 LYSOZYME, CHLORIDE ION, BETA-MERCAPTOETHANOL
Authors:Zhou, H.-J., Matthews, B.W.
Deposit date:1993-05-13
Release date:1993-10-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Determination of alpha-helix propensity within the context of a folded protein. Sites 44 and 131 in bacteriophage T4 lysozyme.
J.Mol.Biol., 235, 1994
1DYG
  • Download 1dyg
  • View 1dyg
Molmil generated image of 1dyg
DETERMINATION OF ALPHA-HELIX PROPENSITY WITHIN THE CONTEXT OF A FOLDED PROTEIN: SITES 44 AND 131 IN BACTERIOPHAGE T4 LYSOZYME
Descriptor:T4 LYSOZYME, CHLORIDE ION, BETA-MERCAPTOETHANOL
Authors:Zhou, H.-J., Matthews, B.W.
Deposit date:1993-05-13
Release date:1993-10-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Determination of alpha-helix propensity within the context of a folded protein. Sites 44 and 131 in bacteriophage T4 lysozyme.
J.Mol.Biol., 235, 1994
3WRT
  • Download 3wrt
  • View 3wrt
Molmil generated image of 3wrt
WILD TYPE BETA-LACTAMASE DERIVED FROM CHROMOHALOBACTER SP.560
Descriptor:Beta-lactamase
Authors:Arai, S., Yonezawa, Y., Okazaki, N., Matsumoto, F., Shimizu, R., Yamada, M., Adachi, M., Tamada, T., Tokunaga, H., Ishibashi, M., Tokunaga, M., Kuroki, R.
Deposit date:2014-02-27
Release date:2015-03-04
Last modified:2015-03-25
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure of a highly acidic beta-lactamase from the moderate halophile Chromohalobacter sp. 560 and the discovery of a Cs(+)-selective binding site
Acta Crystallogr.,Sect.D, 71, 2015
3WRZ
  • Download 3wrz
  • View 3wrz
Molmil generated image of 3wrz
N288Q-N321Q MUTANT BETA-LACTAMASE DERIVED FROM CHROMOHALOBACTER SP.560 (WITHOUT SOAKING)
Descriptor:Beta-lactamase, CALCIUM ION, CHLORIDE ION
Authors:Arai, S., Yonezawa, Y., Okazaki, N., Matsumoto, F., Shimizu, R., Yamada, M., Adachi, M., Tamada, T., Tokunaga, H., Ishibashi, M., Tokunaga, M., Kuroki, R.
Deposit date:2014-02-27
Release date:2015-03-04
Last modified:2015-03-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of a highly acidic beta-lactamase from the moderate halophile Chromohalobacter sp. 560 and the discovery of a Cs(+)-selective binding site
Acta Crystallogr.,Sect.D, 71, 2015
3WS0
  • Download 3ws0
  • View 3ws0
Molmil generated image of 3ws0
N288Q-N321Q MUTANT BETA-LACTAMASE DERIVED FROM CHROMOHALOBACTER SP.560 (CONDITION-1A)
Descriptor:Beta-lactamase, CALCIUM ION, CESIUM ION, ...
Authors:Arai, S., Yonezawa, Y., Okazaki, N., Matsumoto, F., Shimizu, R., Yamada, M., Adachi, M., Tamada, T., Tokunaga, H., Ishibashi, M., Tokunaga, M., Kuroki, R.
Deposit date:2014-02-27
Release date:2015-03-04
Last modified:2015-03-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of a highly acidic beta-lactamase from the moderate halophile Chromohalobacter sp. 560 and the discovery of a Cs(+)-selective binding site
Acta Crystallogr.,Sect.D, 71, 2015
3WS1
  • Download 3ws1
  • View 3ws1
Molmil generated image of 3ws1
N288Q-N321Q MUTANT BETA-LACTAMASE DERIVED FROM CHROMOHALOBACTER SP.560 (CONDITION-1B)
Descriptor:Beta-lactamase, CESIUM ION, CALCIUM ION
Authors:Arai, S., Yonezawa, Y., Okazaki, N., Matsumoto, F., Shimizu, R., Yamada, M., Adachi, M., Tamada, T., Tokunaga, H., Ishibashi, M., Tokunaga, M., Kuroki, R.
Deposit date:2014-02-27
Release date:2015-03-04
Last modified:2015-03-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of a highly acidic beta-lactamase from the moderate halophile Chromohalobacter sp. 560 and the discovery of a Cs(+)-selective binding site
Acta Crystallogr.,Sect.D, 71, 2015
3WS2
  • Download 3ws2
  • View 3ws2
Molmil generated image of 3ws2
N288Q-N321Q MUTANT BETA-LACTAMASE DERIVED FROM CHROMOHALOBACTER SP.560 (CONDITION-1C)
Descriptor:Beta-lactamase, CESIUM ION, CALCIUM ION
Authors:Arai, S., Yonezawa, Y., Okazaki, N., Matsumoto, F., Shimizu, R., Yamada, M., Adachi, M., Tamada, T., Tokunaga, H., Ishibashi, M., Tokunaga, M., Kuroki, R.
Deposit date:2014-02-27
Release date:2015-03-04
Last modified:2015-03-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of a highly acidic beta-lactamase from the moderate halophile Chromohalobacter sp. 560 and the discovery of a Cs(+)-selective binding site
Acta Crystallogr.,Sect.D, 71, 2015
3WS4
  • Download 3ws4
  • View 3ws4
Molmil generated image of 3ws4
N288Q-N321Q MUTANT BETA-LACTAMASE DERIVED FROM CHROMOHALOBACTER SP.560 (CONDITION-2A)
Descriptor:Beta-lactamase, STRONTIUM ION, CHLORIDE ION
Authors:Arai, S., Yonezawa, Y., Okazaki, N., Matsumoto, F., Shimizu, R., Yamada, M., Adachi, M., Tamada, T., Tokunaga, H., Ishibashi, M., Tokunaga, M., Kuroki, R.
Deposit date:2014-02-28
Release date:2015-03-04
Last modified:2015-03-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of a highly acidic beta-lactamase from the moderate halophile Chromohalobacter sp. 560 and the discovery of a Cs(+)-selective binding site
Acta Crystallogr.,Sect.D, 71, 2015
3WS5
  • Download 3ws5
  • View 3ws5
Molmil generated image of 3ws5
N288Q-N321Q MUTANT BETA-LACTAMASE DERIVED FROM CHROMOHALOBACTER SP.560 (CONDITION-2B)
Descriptor:Beta-lactamase, STRONTIUM ION, CHLORIDE ION, ...
Authors:Arai, S., Yonezawa, Y., Okazaki, N., Matsumoto, F., Shimizu, R., Yamada, M., Adachi, M., Tamada, T., Tokunaga, H., Ishibashi, M., Tokunaga, M., Kuroki, R.
Deposit date:2014-02-28
Release date:2015-03-04
Last modified:2015-03-25
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of a highly acidic beta-lactamase from the moderate halophile Chromohalobacter sp. 560 and the discovery of a Cs(+)-selective binding site
Acta Crystallogr.,Sect.D, 71, 2015
3VGS
  • Download 3vgs
  • View 3vgs
Molmil generated image of 3vgs
WILD-TYPE NUCLEOSIDE DIPHOSPHATE KINASE DERIVED FROM HALOMONAS SP. 593
Descriptor:Nucleoside diphosphate kinase
Authors:Okazaki, N., Yonezawa, Y., Arai, S., Matsumoto, F., Tamada, T., Tokunaga, H., Ishibashi, M., Tokunaga, M., Kuroki, R.
Deposit date:2011-08-20
Release date:2012-07-11
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A structural mechanism for dimeric to tetrameric oligomer conversion in Halomonas sp. nucleoside diphosphate kinase
Protein Sci., 21, 2012
3VGT
  • Download 3vgt
  • View 3vgt
Molmil generated image of 3vgt
WILD-TYPE NUCLEOSIDE DIPHOSPHATE KINASE DERIVED FROM HALOMONAS SP. 593
Descriptor:Nucleoside diphosphate kinase
Authors:Okazaki, N., Yonezawa, Y., Arai, S., Matsumoto, F., Tamada, T., Tokunaga, H., Ishibashi, M., Tokunaga, M., Kuroki, R.
Deposit date:2011-08-21
Release date:2012-07-11
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:A structural mechanism for dimeric to tetrameric oligomer conversion in Halomonas sp. nucleoside diphosphate kinase
Protein Sci., 21, 2012
3VGU
  • Download 3vgu
  • View 3vgu
Molmil generated image of 3vgu
E134A MUTANT NUCLEOSIDE DIPHOSPHATE KINASE DERIVED FROM HALOMONAS SP. 593
Descriptor:Nucleoside diphosphate kinase
Authors:Okazaki, N., Yonezawa, Y., Arai, S., Matsumoto, F., Tamada, T., Tokunaga, H., Ishibashi, M., Tokunaga, M., Kuroki, R.
Deposit date:2011-08-21
Release date:2012-07-11
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A structural mechanism for dimeric to tetrameric oligomer conversion in Halomonas sp. nucleoside diphosphate kinase
Protein Sci., 21, 2012
3VGV
  • Download 3vgv
  • View 3vgv
Molmil generated image of 3vgv
E134A MUTANT NUCLEOSIDE DIPHOSPHATE KINASE DERIVED FROM HALOMONAS SP. 593
Descriptor:Nucleoside diphosphate kinase
Authors:Okazaki, N., Yonezawa, Y., Arai, S., Matsumoto, F., Tamada, T., Tokunaga, H., Ishibashi, M., Tokunaga, M., Kuroki, R.
Deposit date:2011-08-21
Release date:2012-07-11
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A structural mechanism for dimeric to tetrameric oligomer conversion in Halomonas sp. nucleoside diphosphate kinase
Protein Sci., 21, 2012
3WBH
  • Download 3wbh
  • View 3wbh
Molmil generated image of 3wbh
STRUCTURAL CHARACTERISTICS OF ALKALINE PHOSPHATASE FROM A MODERATELY HALOPHILIC BACTERIA HALOMONAS SP.593
Descriptor:Alkaline phosphatase, MAGNESIUM ION, ZINC ION, ...
Authors:Arai, S., Yonezawa, Y., Ishibashi, M., Matsumoto, F., Tamada, T., Tokunaga, H., Tokunaga, M., Kuroki, R.
Deposit date:2013-05-17
Release date:2014-03-12
Last modified:2019-12-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural characteristics of alkaline phosphatase from the moderately halophilic bacterium Halomonas sp. 593.
Acta Crystallogr.,Sect.D, 70, 2014
2ZKH
  • Download 2zkh
  • View 2zkh
Molmil generated image of 2zkh
HUMAN THROMBOPOIETIN NEUTRALIZING ANTIBODY TN1 FAB
Descriptor:Monoclonal TN1 FAB light chain, Monoclonal TN1 FAB heavy chain
Authors:Arai, S., Tamada, T., Honjo, E., Maeda, Y., Kuroki, R.
Deposit date:2008-03-21
Release date:2009-03-24
Last modified:2017-12-13
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:An insight into the thermodynamic characteristics of human thrombopoietin complexation with TN1 antibody.
Protein Sci., 25, 2016