Author results

4R8T
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STRUCTURE OF JEV PROTEASE
Descriptor:Serine protease subunit NS2B, NS3, CHLORIDE ION
Authors:Nair, D.T., Weinert, T., Wang, M., Olieric, V.
Deposit date:2014-09-03
Release date:2014-12-24
Last modified:2015-08-12
Method:X-RAY DIFFRACTION (2.133 Å)
Cite:Fast native-SAD phasing for routine macromolecular structure determination.
Nat.Methods, 12, 2015
4TNO
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HYPOTHETICAL PROTEIN PF1117 FROM PYROCOCCUS FURIOSUS: STRUCTURE SOLVED BY SULFUR-SAD USING SWISS LIGHT SOURCE DATA
Descriptor:CRISPR-associated endoribonuclease Cas2, CHLORIDE ION
Authors:Weinert, T., Waltersperger, S., Olieric, V., Panepucci, E., Chen, L., Rose, J.P., Wang, M., Wang, B.C., Southeast Collaboratory for Structural Genomics (SECSG)
Deposit date:2014-06-04
Release date:2014-12-10
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Fast native-SAD phasing for routine macromolecular structure determination.
Nat.Methods, 12, 2015
2Z11
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CRYSTAL STRUCTURE OF PUTATIVE ACETYLTRANSFERASE
Descriptor:Ribosomal-protein-alanine acetyltransferase
Authors:Murayama, K., Kato-Murayama, M., Terada, T., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-07
Release date:2007-11-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structure of putative acetyltransferase
To be Published
2ZXR
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CRYSTAL STRUCTURE OF RECJ IN COMPLEX WITH MG2+ FROM THERMUS THERMOPHILUS HB8
Descriptor:Single-stranded DNA specific exonuclease RecJ, MAGNESIUM ION
Authors:Wakamatsu, T., Kitamura, Y., Nakagawa, N., Masui, R., Kuramitsu, S.
Deposit date:2009-01-05
Release date:2010-01-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structure of RecJ exonuclease defines its specificity for single-stranded DNA
J.Biol.Chem., 285, 2010
4NZY
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CRYSTAL STRUCTURE (TYPE-2) OF DTMP KINASE (ST1543) FROM SULFOLOBUS TOKODAII STRAIN7
Descriptor:Probable thymidylate kinase, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, PHOSPHATE ION, ...
Authors:Biswas, A., Jeyakanthan, J., Sekar, K., Kuramitsu, S., Yokoyama, S.
Deposit date:2013-12-13
Release date:2014-12-24
Last modified:2015-08-12
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Insight into Substrate Binding Mechanism in Thymidylate Kinase based on Intrinsic Dynamics of the Active Site
To be Published
4TN8
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CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS THIOREDOXIN SOLVED BY SULFUR SAD USING SWISS LIGHT SOURCE DATA
Descriptor:Thioredoxin, CHLORIDE ION
Authors:Weinert, T., Waltersperger, S., Olieric, V., Panepucci, E., Chen, L., Rose, J.P., Wang, M., Wang, B.C., Southeast Collaboratory for Structural Genomics (SECSG)
Deposit date:2014-06-03
Release date:2014-12-10
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Fast native-SAD phasing for routine macromolecular structure determination.
Nat.Methods, 12, 2015
1V8D
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CRYSTAL STRUCTURE OF THE CONSERVED HYPOTHETICAL PROTEIN TT1679 FROM THERMUS THERMOPHILUS
Descriptor:hypothetical protein (TT1679), ZINC ION
Authors:Kishishita, S., Terada, T., Shirouzu, M., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-01-05
Release date:2004-07-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:Crystal structure of the conserved hypothetical protein TT1679 from Thermus thermophilus HB8
To be Published
2PPY
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CRYSTAL STRUCTURE OF ENOYL-COA HYDRATES (GK_1992) FROM GEOBACILLUS KAUSTOPHILUS HTA426
Descriptor:Enoyl-CoA hydratase, DI(HYDROXYETHYL)ETHER, 1,2-ETHANEDIOL
Authors:Kanaujia, S.P., Jeyakanthan, J., Kavyashree, M., Sekar, K., Ebihara, A., Kuramitsu, S., Shinkai, A., Shiro, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-01
Release date:2008-05-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:Crystal structure of Enoyl-CoA hydrates (gk_1992) from Geobacillus Kaustophilus HTA426
To be Published
3ACC
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CRYSTAL STRUCTURE OF HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE WITH GMP FROM THERMUS THERMOPHILUS HB8
Descriptor:Hypoxanthine-guanine phosphoribosyltransferase, GUANOSINE-5'-MONOPHOSPHATE, 1,4-DIETHYLENE DIOXIDE
Authors:Kanagawa, M., Baba, S., Hirotsu, K., Kuramitsu, S., Yokoyama, S., Kawai, G., Sampei, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2009-12-30
Release date:2010-02-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:Structures of hypoxanthine-guanine phosphoribosyltransferase (TTHA0220) from Thermus thermophilus HB8.
Acta Crystallogr.,Sect.F, 66, 2010
4PII
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CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN PF0907 FROM PYROCOCCUS FURIOSUS SOLVED BY SULFUR SAD USING SWISS LIGHT SOURCE DATA
Descriptor:N-glycosylase/DNA lyase, CHLORIDE ION, IMIDAZOLE
Authors:Weinert, T., Waltersperger, S., Olieric, V., Panepucci, E., Chen, L., Rose, J.P., Wang, M., Wang, B.C., Southeast Collaboratory for Structural Genomics (SECSG)
Deposit date:2014-05-08
Release date:2014-12-10
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Fast native-SAD phasing for routine macromolecular structure determination.
Nat.Methods, 12, 2015
2D66
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ASPARTATE AMINOTRANSFERASE MUTANT MAB
Descriptor:Aspartate aminotransferase, SULFATE ION, PYRIDOXAL-5'-PHOSPHATE
Authors:Tanaka, Y., Nakagawa, N., Tada, H., Yano, T., Masui, R., Kuramitsu, S.
Deposit date:2005-11-09
Release date:2006-11-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:The Structures of Aspartate Aminotransferase with Mutations of Non-Active-Site Residues
To be Published
1AMQ
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X-RAY CRYSTALLOGRAPHIC STUDY OF PYRIDOXAMINE 5'-PHOSPHATE-TYPE ASPARTATE AMINOTRANSFERASES FROM ESCHERICHIA COLI IN THREE FORMS
Descriptor:ASPARTATE AMINOTRANSFERASE, 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE
Authors:Miyahara, I., Hirotsu, K., Hayashi, H., Kagamiyama, H.
Deposit date:1994-07-01
Release date:1994-09-30
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:X-ray crystallographic study of pyridoxamine 5'-phosphate-type aspartate aminotransferases from Escherichia coli in three forms.
J.Biochem.(Tokyo), 116, 1994
1B5O
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THERMUS THERMOPHILUS ASPARTATE AMINOTRANSFERASE SINGLE MUTANT 1
Descriptor:PROTEIN (ASPARTATE AMINOTRANSFERASE), PHOSPHATE ION, PYRIDOXAL-5'-PHOSPHATE
Authors:Ura, H., Nakai, T., Kawaguchi, S.I., Miyahara, I., Hirotsu, K., Kuramitsu, S.
Deposit date:1999-01-07
Release date:2003-09-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Substrate recognition mechanism of thermophilic dual-substrate enzyme
J.BIOCHEM.(TOKYO), 130, 2001
1CKG
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T52V MUTANT HUMAN LYSOZYME
Descriptor:PROTEIN (LYSOZYME)
Authors:Takano, K., Yamagata, Y., Funahashi, J., Yutani, K.
Deposit date:1999-04-22
Release date:1999-05-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Contribution of intra- and intermolecular hydrogen bonds to the conformational stability of human lysozyme(,).
Biochemistry, 38, 1999
1DI5
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ROLE OF AMINO ACID RESIDUES AT TURNS IN THE CONFORMATIONAL STABILITY AND FOLDING OF HUMAN LYSOZYME
Descriptor:LYSOZYME C, SODIUM ION
Authors:Takano, K., Yamagata, Y., Yutani, K.
Deposit date:1999-11-29
Release date:1999-12-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Role of amino acid residues at turns in the conformational stability and folding of human lysozyme.
Biochemistry, 39, 2000
1IQU
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CRYSTAL STRUCTURE OF PHOTOLYASE-THYMINE COMPLEX
Descriptor:photolyase, PHOSPHATE ION, THYMINE, ...
Authors:Komori, H., Masui, R., Kuramitsu, S., Yokoyama, S., Shibata, T., Inoue, Y., Miki, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2001-08-03
Release date:2002-05-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of thermostable DNA photolyase: pyrimidine-dimer recognition mechanism.
Proc.Natl.Acad.Sci.USA, 98, 2001
1IUG
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THE CRYSTAL STRUCTURE OF ASPARTATE AMINOTRANSFERASE WHICH BELONGS TO SUBGROUP IV FROM THERMUS THERMOPHILUS
Descriptor:putative aspartate aminotransferase, PHOSPHATE ION
Authors:Katsura, Y., Shirouzu, M., Yamaguchi, H., Ishitani, R., Nureki, O., Kuramitsu, S., Hayashi, H., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-03-04
Release date:2003-11-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of a putative aspartate aminotransferase belonging to subgroup IV.
Proteins, 55, 2004
1UFA
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CRYSTAL STRUCTURE OF TT1467 FROM THERMUS THERMOPHILUS HB8
Descriptor:TT1467 protein
Authors:Idaka, M., Terada, T., Murayama, K., Yamaguchi, H., Nureki, O., Ishitani, R., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-05-28
Release date:2003-11-28
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of TT1467 from Thermus thermophilus HB8
To be published
1UM9
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BRANCHED-CHAIN 2-OXO ACID DEHYDROGENASE (E1) FROM THERMUS THERMOPHILUS HB8 IN APO-FORM
Descriptor:2-oxo acid dehydrogenase alpha subunit, 2-oxo acid dehydrogenase beta subunit, SULFATE ION
Authors:Nakai, T., Nakagawa, N., Maoka, N., Masui, R., Kuramitsu, S., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-09-25
Release date:2004-03-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Ligand-induced Conformational Changes and a Reaction Intermediate in Branched-chain 2-Oxo Acid Dehydrogenase (E1) from Thermus thermophilus HB8, as Revealed by X-ray Crystallography
J.Mol.Biol., 337, 2004
1V8S
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CRYSTAL STRUCTURE ANALUSIS OF THE ADP-RIBOSE PYROPHOSPHATASE COMPLEXED WITH AMP AND MG
Descriptor:ADP-ribose pyrophosphatase, MAGNESIUM ION, ADENOSINE MONOPHOSPHATE
Authors:Yoshiba, S., Ooga, T., Nakagawa, N., Shibata, T., Inoue, Y., Yokoyama, S., Kuramitsu, S., Masui, R., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-01-14
Release date:2004-10-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal
J.Biol.Chem., 279, 2004
1WDT
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CRYSTAL STRUCTURE OF TTK003000868 FROM THERMUS THERMOPHILUS HB8
Descriptor:elongation factor G homolog, MAGNESIUM ION, GUANOSINE-5'-TRIPHOSPHATE
Authors:Wang, H., Takemoto-Hori, C., Murayama, K., Sekine, S., Terada, T., Shirouzu, M., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-17
Release date:2005-05-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of ttk003000868 from Thermus thermophilus HB8
To be published
1WEK
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CRYSTAL STRUCTURE OF THE CONSERVED HYPOTHETICAL PROTEIN TT1465 FROM THERMUS THERMOPHILUS HB8
Descriptor:hypothetical protein TT1465, PHOSPHATE ION
Authors:Kukimoto-Niino, M., Murayama, K., Kato-Murayama, M., Terada, T., Shirouzu, M., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-25
Release date:2004-11-25
Last modified:2014-11-12
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures of possible lysine decarboxylases from Thermus thermophilus HB8
Protein Sci., 13, 2004
1WKL
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CRYSTAL STRUCTURE OF NUCLEOSIDE DIPHOSPHATE KINASE FROM THERMUS THERMOPHILUS HB8 IN COMPLEX WITH ATP AND ADP
Descriptor:nucleotide diphosphate kinase, PHOSPHONIC ACID, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Takeishi, S., Nakagawa, N., Masui, R., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-06-01
Release date:2005-08-23
Last modified:2014-04-23
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of Nucleoside Diphosphate Kinase from Thermus thermophilus HB8
To be Published
1WM9
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STRUCTURE OF GTP CYCLOHYDROLASE I FROM THERMUS THERMOPHILUS HB8
Descriptor:GTP cyclohydrolase I, ZINC ION
Authors:Tanaka, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-07-05
Release date:2005-07-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Novel Reaction Mechanism of GTP Cyclohydrolase I. High-Resolution X-Ray Crystallography of Thermus thermophilus HB8 Enzyme Complexed with a Transition State Analogue, the 8-Oxoguanine Derivative.
J.Biochem.(Tokyo), 138, 2005
1WTY
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CRYSTAL STRUCTURE OF A PROBABLE NUCLEOTIDYL TRANSFERASE PROTEIN FROM THERMUS THERMOPHILUS HB8
Descriptor:hypothetical protein TTHA0048
Authors:Kitamura, Y., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-11-29
Release date:2004-12-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of a probable nucleotidyltransferase protein from Thermus Thermophilus HB8
To be Published