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1BON
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BU of 1bon by Molmil
THREE-DIMENSIONAL STRUCTURE OF BOMBYXIN-II, AN INSULIN-RELATED BRAIN-SECRETORY PEPTIDE OF THE SILKMOTH BOMBYX MORI: COMPARISON WITH INSULIN AND RELAXIN
Descriptor: BOMBYXIN-II,BOMBYXIN A-2, BOMBYXIN-II,BOMBYXIN A-6
Authors:Nagata, K, Hatanaka, H, Kohda, D, Inagaki, F, Structural Proteomics in Europe (SPINE)
Deposit date:1994-07-21
Release date:1995-01-26
Last modified:2019-12-25
Method:SOLUTION NMR
Cite:Three-dimensional solution structure of bombyxin-II an insulin-like peptide of the silkmoth Bombyx mori: structural comparison with insulin and relaxin.
J.Mol.Biol., 253, 1995
1BOM
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BU of 1bom by Molmil
THREE-DIMENSIONAL STRUCTURE OF BOMBYXIN-II, AN INSULIN-RELATED BRAIN-SECRETORY PEPTIDE OF THE SILKMOTH BOMBYX MORI: COMPARISON WITH INSULIN AND RELAXIN
Descriptor: BOMBYXIN-II,BOMBYXIN A-2, BOMBYXIN-II,BOMBYXIN A-6
Authors:Nagata, K, Hatanaka, H, Kohda, D, Inagaki, F.
Deposit date:1994-07-21
Release date:1994-11-01
Last modified:2019-12-25
Method:SOLUTION NMR
Cite:Three-dimensional solution structure of bombyxin-II an insulin-like peptide of the silkmoth Bombyx mori: structural comparison with insulin and relaxin.
J.Mol.Biol., 253, 1995
4HE7
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BU of 4he7 by Molmil
Crystal Structure of Brazzein
Descriptor: Defensin-like protein, SODIUM ION
Authors:Nagata, K, Hongo, N, Kameda, Y, Yamamura, A, Sasaki, H, Lee, W.C, Ishikawa, K, Suzuki, E, Tanokura, M.
Deposit date:2012-10-03
Release date:2013-03-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The structure of brazzein, a sweet-tasting protein from the wild African plant Pentadiplandra brazzeana
Acta Crystallogr.,Sect.D, 69, 2013
1V46
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BU of 1v46 by Molmil
Solution Structure of CCAP (Crustacean Cardioactive Peptide) from Drosophila melanogaster
Descriptor: Cardioactive Peptide
Authors:Nagata, K, Tanokura, M.
Deposit date:2003-11-10
Release date:2004-12-14
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure of CCAP from Drosophila melanogaster
To be Published
1EQK
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BU of 1eqk by Molmil
SOLUTION STRUCTURE OF ORYZACYSTATIN-I, A CYSTEINE PROTEINASE INHIBITOR OF THE RICE, ORYZA SATIVA L. JAPONICA
Descriptor: ORYZACYSTATIN-I
Authors:Nagata, K, Kudo, N, Abe, K, Arai, S, Tanokura, M.
Deposit date:2000-04-05
Release date:2001-01-10
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Three-dimensional solution structure of oryzacystatin-I, a cysteine proteinase inhibitor of the rice, Oryza sativa L. japonica.
Biochemistry, 39, 2000
1ZOV
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BU of 1zov by Molmil
Crystal Structure of Monomeric Sarcosine Oxidase from Bacillus sp. NS-129
Descriptor: CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, Monomeric sarcosine oxidase
Authors:Nagata, K, Sasaki, H, Ohtsuka, J, Hua, M, Okai, M, Kubota, K, Kamo, M, Ito, K, Ichikawa, T, Koyama, Y, Tanokura, M.
Deposit date:2005-05-14
Release date:2006-05-23
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Crystal structure of monomeric sarcosine oxidase from Bacillus sp. NS-129 reveals multiple conformations at the active-site loop
PROC.JPN.ACAD.,SER.B, 81, 2005
6KZA
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BU of 6kza by Molmil
Crystal structure of the complex of the interaction domains of E. coli DnaB helicase and DnaC helicase loader
Descriptor: DNA replication protein DnaC, Replicative DNA helicase
Authors:Nagata, K, Okada, A, Ohtsuka, J, Ohkuri, T, Akama, Y, Sakiyama, Y, Miyazaki, E, Horita, S, Katayama, T, Ueda, T, Tanokura, M.
Deposit date:2019-09-23
Release date:2019-11-20
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Crystal structure of the complex of the interaction domains of Escherichia coli DnaB helicase and DnaC helicase loader: structural basis implying a distortion-accumulation mechanism for the DnaB ring opening caused by DnaC binding.
J.Biochem., 167, 2020
1HRE
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BU of 1hre by Molmil
SOLUTION STRUCTURE OF THE EPIDERMAL GROWTH FACTOR-LIKE DOMAIN OF HEREGULIN-ALPHA, A LIGAND FOR P180ERB4
Descriptor: HEREGULIN ALPHA
Authors:Nagata, K, Kohda, D, Hatanaka, H, Ichikawa, S, Inagaki, F.
Deposit date:1994-07-21
Release date:1994-10-15
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:Solution structure of the epidermal growth factor-like domain of heregulin-alpha, a ligand for p180erbB-4.
EMBO J., 13, 1994
1HRF
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BU of 1hrf by Molmil
SOLUTION STRUCTURE OF THE EPIDERMAL GROWTH FACTOR-LIKE DOMAIN OF HEREGULIN-ALPHA, A LIGAND FOR P180ERB4
Descriptor: HEREGULIN ALPHA
Authors:Nagata, K, Kohda, D, Hatanaka, H, Ichikawa, S, Inagaki, F.
Deposit date:1994-07-21
Release date:1994-10-15
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:Solution structure of the epidermal growth factor-like domain of heregulin-alpha, a ligand for p180erbB-4.
EMBO J., 13, 1994
1Y49
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BU of 1y49 by Molmil
Solution Structure of CCAP (Crustacean Cardioactive Peptide) from Drosophila melanogaster
Descriptor: Cardioactive peptide
Authors:Nagata, K, Tanokura, M.
Deposit date:2004-11-30
Release date:2005-11-30
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution Structure of CCAP (Crustacean Cardioactive Peptide) from Drosophila melanogaster
to be published
2YQY
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BU of 2yqy by Molmil
Crystal structure of TT2238, a four-helix bundle protein
Descriptor: Hypothetical protein TTHA0303
Authors:Nagata, K, Ohtsuka, J, Iino, H, Ebihara, A, Yokoyama, S, Kuramitsu, S, Tanokura, M.
Deposit date:2007-03-31
Release date:2008-03-04
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of TTHA0303 (TT2238), a four-helix bundle protein with an exposed histidine triad from Thermus thermophilus HB8 at 2.0 A
Proteins, 70, 2008
2KSW
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BU of 2ksw by Molmil
Backbone 1H, 13C, and 15N Chemical Shift Assignments for Oryctin
Descriptor: Oryctin
Authors:Horita, S, Ishibashi, J, Nagata, K, Miyakawa, T, Yamakawa, M, Tanokura, M.
Deposit date:2010-01-14
Release date:2010-07-14
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Isolation, cDNA cloning, and structure-based functional characterization of oryctin, a hemolymph protein from the coconut rhinoceros beetle, Oryctes rhinoceros, as a novel serine protease inhibitor
J.Biol.Chem., 285, 2010
2LDS
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BU of 2lds by Molmil
Solution Structure of a Short-chain LaIT1 from the Venom of Scorpion Liocheles australasiae
Descriptor: Insecticidal toxin LaIT1
Authors:Horita, S, Miyakawa, T, Nagata, K, Tanokura, M.
Deposit date:2011-06-01
Release date:2011-09-14
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution structure of a short-chain insecticidal toxin LaIT1 from the venom of scorpion Liocheles australasiae.
Biochem.Biophys.Res.Commun., 411, 2011
3LNQ
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BU of 3lnq by Molmil
Structure of Aristaless homeodomain in complex with DNA
Descriptor: 5'-D(*CP*CP*CP*TP*AP*AP*TP*TP*AP*AP*AP*CP*CP*C)-3', 5'-D(*GP*GP*GP*TP*TP*TP*AP*AP*TP*TP*AP*GP*GP*G)-3', ACETATE ION, ...
Authors:Takamura, Y, Miyazono, K, Nagata, K, Saigo, K, Kojima, T, Tanokura, M.
Deposit date:2010-02-02
Release date:2010-04-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Cooperative DNA-binding and sequence-recognition mechanism of aristaless and clawless
Embo J., 29, 2010
3LQB
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BU of 3lqb by Molmil
Crystal structure of the hatching enzyme ZHE1 from the zebrafish Danio rerio
Descriptor: 1,2-ETHANEDIOL, LOC792177 protein, SULFATE ION, ...
Authors:Tanokura, M, Okada, A, Nagata, K, Yasumasu, S, Ohtsuka, J, Iuchi, I.
Deposit date:2010-02-08
Release date:2010-09-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Crystal structure of zebrafish hatching enzyme 1 from the zebrafish Danio rerio
J.Mol.Biol., 402, 2010
4H7I
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BU of 4h7i by Molmil
Crystal structure of haloalkane dehalogenase LinB L138I mutant from Sphingobium sp. MI1205
Descriptor: CALCIUM ION, CHLORIDE ION, GLYCEROL, ...
Authors:Okai, M, Ohtsuka, J, Imai, L.F, Mase, T, Moriuchi, R, Tsuda, M, Nagata, K, Nagata, Y, Tanokura, M.
Deposit date:2012-09-20
Release date:2013-06-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase LinB from Sphingobium sp. Strain MI1205.
J.Bacteriol., 195, 2013
3MGF
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BU of 3mgf by Molmil
Crystal Structure of Monomeric Kusabira-Orange (MKO), Orange-Emitting GFP-like Protein, at pH 7.5
Descriptor: Fluorescent protein
Authors:Ebisawa, T, Yamamura, A, Ohtsuka, J, Kameda, Y, Hayakawa, K, Nagata, K, Tanokura, M.
Deposit date:2010-04-06
Release date:2011-03-16
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of Monomeric Kusabira-Orange (MKO), Orange-Emitting GFP-like Protein, at pH 7.5
To be Published
4H7H
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BU of 4h7h by Molmil
Crystal structure of haloalkane dehalogenase LinB T135A mutant from Sphingobium sp. MI1205
Descriptor: CALCIUM ION, CHLORIDE ION, Haloalkane dehalogenase
Authors:Okai, M, Ohtsuka, J, Imai, L.F, Mase, T, Moriuchi, R, Tsuda, M, Nagata, K, Nagata, Y, Tanokura, M.
Deposit date:2012-09-20
Release date:2013-06-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase LinB from Sphingobium sp. Strain MI1205.
J.Bacteriol., 195, 2013
4H7D
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BU of 4h7d by Molmil
Crystal structure of haloalkane dehalogenase LinB T81A mutant from Sphingobium sp. MI1205
Descriptor: CALCIUM ION, CHLORIDE ION, GLYCEROL, ...
Authors:Okai, M, Ohtsuka, J, Imai, L.F, Mase, T, Moriuchi, R, Tsuda, M, Nagata, K, Nagata, Y, Tanokura, M.
Deposit date:2012-09-20
Release date:2013-06-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase LinB from Sphingobium sp. Strain MI1205.
J.Bacteriol., 195, 2013
4H7E
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BU of 4h7e by Molmil
Crystal structure of haloalkane dehalogenase LinB V112A mutant from Sphingobium sp. MI1205
Descriptor: CALCIUM ION, CHLORIDE ION, GLYCEROL, ...
Authors:Okai, M, Ohtsuka, J, Imai, L.F, Mase, T, Moriuchi, R, Tsuda, M, Nagata, K, Nagata, Y, Tanokura, M.
Deposit date:2012-09-20
Release date:2013-06-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase LinB from Sphingobium sp. Strain MI1205.
J.Bacteriol., 195, 2013
4H7F
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BU of 4h7f by Molmil
Crystal structure of haloalkane dehalogenase LinB V134I mutant from Sphingobium sp. MI1205
Descriptor: CALCIUM ION, CHLORIDE ION, GLYCEROL, ...
Authors:Okai, M, Ohtsuka, J, Imai, L.F, Mase, T, Moriuchi, R, Tsuda, M, Nagata, K, Nagata, Y, Tanokura, M.
Deposit date:2012-09-20
Release date:2013-06-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase LinB from Sphingobium sp. Strain MI1205.
J.Bacteriol., 195, 2013
4H77
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BU of 4h77 by Molmil
Crystal structure of haloalkane dehalogenase LinB from Sphingobium sp. MI1205
Descriptor: CALCIUM ION, CHLORIDE ION, GLYCEROL, ...
Authors:Okai, M, Ohtsuka, J, Imai, F.L, Mase, T, Moriuchi, R, Tsuda, M, Nagata, K, Nagata, Y, Tanokura, M.
Deposit date:2012-09-20
Release date:2013-06-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase LinB from Sphingobium sp. Strain MI1205.
J.Bacteriol., 195, 2013
4H7J
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Crystal structure of haloalkane dehalogenase LinB H247A mutant from Sphingobium sp. MI1205
Descriptor: CALCIUM ION, CHLORIDE ION, GLYCEROL, ...
Authors:Okai, M, Ohtsuka, J, Imai, L.F, Mase, T, Moriuchi, R, Tsuda, M, Nagata, K, Nagata, Y, Tanokura, M.
Deposit date:2012-09-20
Release date:2013-06-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase LinB from Sphingobium sp. Strain MI1205.
J.Bacteriol., 195, 2013
4H7K
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Crystal structure of haloalkane dehalogenase LinB I253M mutant from Sphingobium sp. MI1205
Descriptor: CALCIUM ION, CHLORIDE ION, Haloalkane dehalogenase
Authors:Okai, M, Ohtsuka, J, Imai, L.F, Mase, T, Moriuchi, R, Tsuda, M, Nagata, K, Nagata, Y, Tanokura, M.
Deposit date:2012-09-20
Release date:2013-06-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase LinB from Sphingobium sp. Strain MI1205.
J.Bacteriol., 195, 2013
8GNN
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BU of 8gnn by Molmil
Crystal structure of the human RAD9-RAD1-HUS1-RAD17 complex
Descriptor: Cell cycle checkpoint control protein RAD9A, Cell cycle checkpoint protein RAD1, Cell cycle checkpoint protein RAD17, ...
Authors:Hara, K, Nagata, K, Iida, N, Hashimoto, H.
Deposit date:2022-08-24
Release date:2023-03-08
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.119 Å)
Cite:The 9-1-1 DNA clamp subunit RAD1 forms specific interactions with clamp loader RAD17, revealing functional implications for binding-protein RHINO.
J.Biol.Chem., 299, 2023

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