| Theoretical models ... VIRUS TYPE I (HTLV-I) PROTEASE S.B.SHUKER,B.E.HERGER,K.J.DENNISON DisplayDownload 1tqaCOMPARATIVE MODELING ... FROM CHLAMYDOMONAS REINHARDTII F.GARDEBIEN,R.R.THANGUDU,B.GONTERO,B.OFFMANN DisplayDownload 2df9MOLECULAR MODELED STRUCTURE & SIMULATION OF NICOTINIC ... |
| PDBj Mine 2: SQL Search ... ['Ito, N.'] (primary):] SELECT pdbid FROM brief_summary b WHERE '{"Ito, N."}' <@ citation_author_pri [Search for ... Search for journal volume ['555']:] SELECT pdbid FROM brief_summary b WHERE '{"555"}' && citation_volume [Search for exprimental method ... |
| [wwPDB] Carbohydrate Remediation ... fragments of heparin and heparan sulfate; epitope patterns such as A/B blood group antigens and the H-type or Lewis-type stems; ... Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth ... |
| CRNPRED ... ). CN means predicted contact numbers encoded in 2 states where B indicates buried and E means exposed. - AA means the ... others). - CN means predicted contact numbers encoded in 2 states where B indicates buried and E means exposed. - The lines after# AA ... |
| MAFFTash ... making this too large as there are potentially many homologous sequences. b. Min seq ID from original input. (default 0). This ... this too large as there are potentially many homologous sequences. 10. b. Min seq ID from original input. (default 0). This ... |
| [wwPDB] CASP16 Call for Targets ... Kretsch RC, Andersen ES, Bujnicki JM, Chiu W, Das R, Luo B, Masquida B, McRae EKS, Schroeder GM, Su Z, Wedekind JE, Xu L, ... Kryshtafovych A, Adamopoulos A, Alahuhta M, Arvin AM, Bomble YJ, Bottcher B, Breyton C, Chiarini V, Chinnam NB, Chiu W, Fidelis K, ... |
| PDBML-extatom ... _siteCategory> |
| The Number of Equivalent Residues ... is a map between the two sequences. Given two structures A and B, with residue indices iA and iB , and coordinates RA and RB ... distances (1) dk = sqrt[(RA[m(k,A)]'-RB[m(k,B)])^2] Thus, the maximization of NER represents a six-dimensional optimization ... |
| NER ... is a map between the two sequences. Given two structures A and B, with residue indices iA and iB , and coordinates RA and RB ... distances (1) dk = sqrt[(RA[m(k,A)]'-RB[m(k,B)])^2] Thus, the maximization of NER represents a six-dimensional optimization ... |
| List of Publications ... of Protein Models in Biomedical Research Schwede, T., Sali, A., Honig, B., Levitt, M., Berman, H.M., Jones, D., Brenner, S.E ... K., Frabk, J., Godzik, A., Henrick, K., Joachimiak, A., Heymann, B., Jones, D., Markley, J.L., Moult, J., Montelione, G.T., Orengo ... |
| Obtain the PDBID + ChainID (auth_asym_id) of the entries containing the sequence \ ... " and resouce species "Glycine max" (soybean) Search from here SELECT b.pdbid, e.pdbx_strand_id FROM entity_poly e LEFT JOIN brief ... _summary b ON e.pdbid=b.pdbid WHERE e.pdbx_seq_one_letter_code LIKE ... |
| New wwPDB X-ray structure validation reports support depositors, journal editors and referees ... Task Force. Structure. [4] Henderson R, Sali A, Baker ML, Carragher B, Devkota B, Downing KH, Egelman EH, Feng Z, Frank J, Grigorieff N, Jiang W ... |
| Cite Us / Terms and Conditions ... victoria doi: 10.2210/pdb1ema/pdb Literature Citation: Ormo, M., Cubitt, A.B., Kallio, K., Gross, L.A., Tsien, R.Y., Remington, S.J ... , D.A., Gerchman, S.E., Graziano, V., Kycia, H., Studier, B., Almo, S.C., Burley, S.K., New York SGX Research Center for ... |
| [wwPDB] Structure Predictors: Use ModelCIF for Computed Structure Models ... . Overview of the ModelCIF extension of PDBx/mmCIF. B. Schematic representation of ModelCIF data specifications. ModelCIF includes definitions ... more information about this data information framework. [1] Vallat B, Tauriello G, Bienert S, Haas J, Webb BM, ... |
| About PDBMLplus, PDBMLadd, and mmjson-plus ... of_bins_used, percent_reflns_R_free, update_id refine_pdbmlplus B_iso_mean, auth_validate, entry_id, Is_R_factor_R_free ... pdbx_Is_sigma_I, pdbx_refine_id, update_id reflns_pdbmlplus B_iso_Wilson_estimate, Rmerge_F_obs, auth_validate, d_resolution_high ... |
| Functional annotation example ... are shown): We see that the first hit is 1uan itself (chain B, if you entered 1uan A as the query). The first non-self ... |
| EDM viewer ... , apply random coordinate shifts of the order of 0.2 Å and random B-factor shifts of 10A^2 to individual atoms to deliberately introduce errors ... |
| non-PDB format compatible entries ... characters - complex sheet records(e.g. a large beta barrel structure) - large B factor (≥ 1000) - 5-character CCD IDs As of December 10 2014, the ... |
| [wwPDB] Paper Published on CryoEM Archiving and Validation Recommendations ... . Kleywegt, Paul D. Adams, Sarah J. Butcher, Cathy Lawson, Alexis Rohou, Peter B. Rosenthal, Sriram Subramaniam, Maya Topf, Sanja Abbott, Philip R. Baldwin, John M ... |
| FAQ ... " of Japan is written in uppercase? A) PDBj ( P rotein D ata B ank J apan) maintains a centralized PDB archive of macromolecular structures as ... |
| Promode help ... vector is composed of two line segments named $line##A*** and $line##B***, where ## is mode number (i.e., ## = 01, 02, ..., 10) and *** is serial ... |
| Download PDBETA ... . You may: (a) use the Software on any computer in your possession; (b) make copies of the Software only for personal use; and (c) distribute ... |
| What is ProMode-Elastic ... data for the 3 lowest-frequency normal modes are given by graphs. b) Fluctuation of dihedral angles. Time average and data for the 3 lowest ... |
| Celebrating 10 Years of the wwPDB ... IUCr journals 3DEM VTF is convened. R Henderson, A Sali, ML Baker, B Carragher,ure deposition. 2011 |
| [wwPDB] Preprint Published on CryoEM Archiving and Validation Recommendations ... . Kleywegt, Paul D. Adams, Sarah J. Butcher, Cathy Lawson, Alexis Rohou, Peter B. Rosenthal, Sriram Subramaniam, Maya Topf, Sanja Abbott, Philip R. Baldwin, John M ... |
✖
218853
PDB entries from 2024-04-24
