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News on 2012-10-04

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[wwPDB] Biocurator Milestone: >10,000 Depositions Processed

... her PhD in Environmental Engineering from Osaka University and joined PDB after working at the National Cerebral and Cardiovascular Center, ... Osaka. She has joined PDB in 2007 and is now working at the branch ...

[wwPDB] Preprint Published on NextGen Archive

... access to integrated annotations and enriched structural information for PDB data: NextGen Archive: Centralising Access to Integrated ... provided in the structure model files in the PDB main archive. The inclusion of UniProtKB numbering facilitates ...

News on 2007-12-20

... via rsync is started. We have started to provide remediated PDB archive via rsync protocol. Rsync is a software which synchronizes files ... transfer using delta encoding when appropriate. Detailed information for PDB archive service is available from ...

[wwPDB] Biocurator Milestone: >10,000 Depositions Processed

... wwPDB biocurator Dr. Brian Hudson on processing over 10,000 PDB depositions! Dr. Hudson received his PhD in Chemistry from the ... X-ray crystallography and cryo-electron microscopy. He has joined PDB in 2010 and has established himself as a highly qualified ...

News on 2008-12-08

... 3.15 to be Released A new standardized version of the PDB archive will be available from ftp://ftp.protein.osaka-u.ac. ... released prior to December 2, 2008 will be re-released as PDB Format Version 3.15 files. This release will overwrite all existing ...

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Rest interface examples

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News on 2010-08-19

... easily reviewed and shared by depositors. As these PDB validation reports provide an assessment of structure quality ... further develop our data deposition and processing procedures. PDB validation reports are already required by the International Union ...

Molmil molecular viewer

... viewer you can load your own PDB, PDBML PDBx/mmCIF, mmJSON files, but also load existing PDB entries (via PDB ID) and chem_comp entries ... please cite our paper: Molmil: a molecular viewer for the PDB and beyond How to Use Please see the following pages for ...

Data Deposition Information

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RDB Query Builder

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News on 2011-07-13

... data (v4.0). Please download the newest version from here. PDB Archive Version 4.0 has been released on July 13, 2011. ... wwPDB has released the new version of the PDB data, which reflects the review and resulting changes and corrections. ...

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[wwPDB] Consistent Format for Validation and Coordinate Data

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About Asymmetric Unit

... (i.e. non-crystallographic asymmetric unit) to the PDB. To reconstruct the biological assembly, non-crystallographic symmetry ... Biological assembly and Biological assembly description in PDB data files. (RCSB PDB-101) Looking at Structures: Introduction to ...

Chemical shift

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[wwPDB] Improvements to visualization of ligand validation and electron density maps in the wwPDB validation report

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[wwPDB] More than 1,000 SARS-CoV-2 Coronavirus Protein Structures Available

... high-resolution crystal structure of the coronavirus main protease (PDB 6lu7), was released early in the pandemic on February 5 ... discovery and reuse to combat infection. Open access to PDB structures has already enabled design of effective vaccines against ...

Obtain the PDBID + ChainID (auth_asym_id) of the entries containing the sequence \

... aaseq, which includes all the sequence information in each PDB entry. Element Contents entity_src_nat The biological ... summary.aaseq The value that is concatenated all the sequence in each PDB entry. Tags - Use the digest table "brief_summary" - ...

Derived databases

... ProMode Elasticis a database of normal mode analysis of PDB data. The normal mode analysis is performed by the ... model based normal mode analysis in Torsional Angle space for PDB data. PDBETA can describe molecular structures with relatively smaller ...

News on 2007-12-12

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[wwPDB] Enhanced Collection of Starting Models

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PDBj Chemie

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