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Theoretical models

... 1lg0THEORETICAL STRUCTURE OF TELOMERASE-BINDING PROTEIN P23 T.RAJASEKHAR,T.NEELIMA,J.A.R.P.SARMA DisplayDownload ... FACTOR RECEPTOR-HEPARIN-FIBROBLAST GROWTH FACTOR) DIMER O.T.PENTIKAINEN,M.T.HUHTALA,M.S.JOHNSON DisplayDownload 1qdgDNA QUADRUPLEX STRUCTURE ...

List of Publications

... Kinoshita, K., Suzuki, H., Kawabata, T., Yokochi, M., Iwata, T., Kobayashi, N., Fujiwara, T., Kurisu, G. and Nakamura, H. ... Deafness, and Renal Dysplasia (HDR) syndrome Okawa, T., Yoshida, M., Usui, T., Kudou, T., Iwasaki, Y., Fukuoka, K., Takahashi, N ...

[wwPDB] CASP16 Call for Targets

... Kryshtafovych, Torsten Schwede, Maya Topf 1. Kryshtafovych A, Schwede T, Topf M, Fidelis K, Moult J. Critical assessment of ... JA, Topf M, Tsutakawa SE, Valdivia-Delgado M, Schwede T. Target highlights in CASP14: Analysis of models by structure providers. ...

Cite Us / Terms and Conditions

... , H., Kinoshita, K., Suzuki, H., Kawabata, T., Yokochi, M., Iwata, T., Kobayashi, N., Fujiwara, T., Kurisu, G. and Nakamura, H. Protein Science ... , A.R., Suzuki, H., Yamashita, R., Ikegawa, Y., Kudou, T., Igarashi, R., Kengaku, Y., Cho, H., Standley, D.M., ...

PDBj Mine 2: SQL Search

... _ARRAY(e.pdbx_strand_id,',')) JOIN sifts.pdb_chain_taxonomy t ON t.pdbid = e.pdbid AND t.chain = s.chain WHERE s.go_id = 'GO: ... ids FROM entity_poly e JOIN sifts.pdb_chain_taxonomy t ON t.pdbid = e.pdbid AND t.chain = ANY(STRING_TO_ARRAY(e.pdbx_strand_id ...

SeSAW Tutorial

... that nucleotide binding is a theme. Furthermore, if we check t alignment to the first annotated template (3bwg), shown below, ... 2htn is a different protein (bacterioferritin) and so we don't expect that AOX and 2htn are structurally identical. In particular, ...

[wwPDB] Small Angle Scattering News

... , J., Blanchet, C., Brookes, E., Chakravarthy, S., Chatzimagas, L., Cleveland, T. E., Cowieson, N., Crossett, B., Duff, A. P., Franke, D., Gabel ... , J., Huang, Q., Hub, J. S., Hura, G. L., Irving, T. C., Jeffries, C. M., Jeong, C., Kirby, N., Krueger, S., ...

Molecular viewers

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CRNPRED

... from CRNPRED! - How should I interpret the results? - I don't receive any email from CRNPRED! - How CRNPRED predicts 1D structures? ... gives the residue-wise contact order (in integers). I don't receive any email from CRNPRED! One possible reason is that ...

Celebrating 10 Years of the wwPDB

... AT Brunger, P Emsley, RP Joosten, GJ Kleywegt, EB Krissinel, T LÜtteke, Z Otwinowski, A Perrakis, JS Richardson, WH Sheffler, JL ... SAS Task Force is convened. J Trewhella, WA Hendrickson, M Sato, T Schwede, D Svergun, JA Tainer, J Westbrook, GJ Kleywegt, HM ...

A paper describing PDBj's new tools and activities published in Protein Science.

... ., Sato, H., Nishi, H., Kinoshita, K., Suzuki, H., Kawabata, T., Yokochi, M., Iwata, T., Kobayashi, N., Fujiwara, T., Kurisu, G. and Nakamura, H. Protein Science 27 (1 ...

New wwPDB X-ray structure validation reports support depositors, journal editors and referees

... AT, Emsley P, Joosten RP, Kleywegt GJ, Krissinel EB, Lutteke T, Otwinowski Z, Perrakis A, Richardson JS, Sheffler WH, Smith JL, ... [3] Montelione GT, Nilges M, Bax A, Güntert P, Herrmann T, Richardson JS, Schwieters C, Vranken WF, Vuister GW, Wishart DS, ...

Pelmanism game directions

... you have to remember where they are or else you won't find the matching card (unless you are very lucking and you ... Glutamine (Gln, Q) Arginine (Arg, R) Serine (Ser, S) Threonine (Thr, T) Valine (Val, V) Tryptophan (Trp, W) Tyrosine (Tyr, Y) Proteins 1ajs ...

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... the catalytic sites of representative enzyme proteins are annotated by C.T.Porter, G.J.Bartlett, and J.M.Thornton (http://www ... of representative enzyme proteins are manually annotated by G.J.Bartlett, C.T.Porter, N. Borkakoti, and J. M. Thornton (http://www ...

news on 2016-1-8

... 4.4 will expire on Jan. 21, 2016. After expired, it doesn't work as applet. So we recommend for all administrator of web servers ... 4.4 will expire on Jan. 21, 2016. After expired, it doesn't work as applet. So we recommend for all administrator of web servers ...

Protein Globe

... , https://pdbj.org//globe/globe.cgi?pdbid=1ashchain=Adomain=1 8. Don't like the colors of the sea and the lands ? Try https://pdbj ... items, domain ID is not. Nobody can blame you if you don't know the domain ID of a particular protein fold. Thus, you can ...

About Asymmetric unit and Biological unit

... is "asymmetric unit", which includes minimum essential. It doesn't always mean actual functional unit in organisms. The functional structures ... the format described below: non-large structures which don't excess the PDB format limitation PDB format (as in ...

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Functional annotation example

... on the position of the conserved loop? [References] 1. Handa N, Terada T, Kamewari Y, Hamana H, Tame JR, Park SY, Kinoshita K, Ota M ...

Snake game directions

... , P) Glutamine (Gln, Q) Arginine (Arg, R) Serine (Ser, S) Threonine (Thr, T) Valine (Val, V) Tryptophan (Trp, W) Tyrosine (Tyr, Y)

Molmil user manual

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[wwPDB] Paper Published on NMR Restraint Validation

... Patwardhan, Sameer Velankar, Stephen K Burley, Genji Kurisu, Jeffrey C Hoch, Gaetano T Montelione, Geerten W Vuister, Jasmine Y Young (2024) Structure 32, 1–14 ...

[wwPDB] Paper Published on CryoEM Archiving and Validation Recommendations

... J. Ganesan, Timothy Grant, Aleksandras Gutmanas, Richard Henderson, J. Bernard Heymann, Juha T. Huiskonen, Andrei Istrate, Takayuki Kato, Gabriel C. Lander, Shee-Mei Lok, Steven ...

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