PDB: 1336 resultsInfo pagesStatus searchChemie searchBIRD

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4DV2	Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A Descriptor: 16S rRNA, MAGNESIUM ION, ZINC ION, ... Authors: Demirci, H, Murphy IV, F, Murphy, E, Gregory, S.T, Dahlberg, A.E, Jogl, G. Deposit date: 2012-02-22 Release date: 2013-02-27 Method: X-RAY DIFFRACTION (3.646 Å) Cite: A structural basis for streptomycin resistance To be Published
7ZW0	FAP-80S Complex - Rotated state Descriptor: 18S ribosomal RNA (RDN18-1), 25S ribosomal RNA (RDN25-1), 40S ribosomal protein S0-A, ... Authors: Ikeuchi, K, Buschauer, R, Berninghausen, O, Becker, T, Beckmann, R. Deposit date: 2022-05-17 Release date: 2022-10-05 Method: ELECTRON MICROSCOPY (2.4 Å) Cite: Sensing of individual stalled 80S ribosomes by Fap1 for nonfunctional rRNA turnover. Mol.Cell, 82, 2022
6BZ8	Thermus thermophilus 70S containing 16S G347U point mutation and near-cognate ASL Leucine in A site Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Hoffer, E.D, Maehigashi, T, Fagan, C.E, Dunham, C.M. Deposit date: 2017-12-22 Release date: 2018-11-14 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (3.74 Å) Cite: Ribosomal ambiguity (ram) mutations promote the open (off) to closed (on) transition and thereby increase miscoding. Nucleic Acids Res., 47, 2019
7XNY	High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S10, ... Authors: Cheng, J, Beckmann, R. Deposit date: 2022-04-30 Release date: 2023-04-05 Method: ELECTRON MICROSCOPY (2.5 Å) Cite: A Dynamic rRNA Ribomethylome Drives Stemness in Acute Myeloid Leukemia. Cancer Discov, 13, 2023
7Y7D	Structure of the Bacterial Ribosome with human tRNA Asp(Q34) and mRNA(GAU) Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Ishiguro, K, Yokoyama, T, Shirouzu, M, Suzuki, T. Deposit date: 2022-06-22 Release date: 2023-10-25 Last modified: 2023-12-27 Method: ELECTRON MICROSCOPY (2.58 Å) Cite: Glycosylated queuosines in tRNAs optimize translational rate and post-embryonic growth. Cell, 186, 2023
7Y7C	Structure of the Bacterial Ribosome with human tRNA Asp(G34) and mRNA(GAU) Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Ishiguro, K, Yokoyama, T, Shirouzu, M, Suzuki, T. Deposit date: 2022-06-22 Release date: 2023-10-25 Last modified: 2023-12-27 Method: ELECTRON MICROSCOPY (2.51 Å) Cite: Glycosylated queuosines in tRNAs optimize translational rate and post-embryonic growth. Cell, 186, 2023
7Y7F	Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAC) Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Ishiguro, K, Yokoyama, T, Shirouzu, M, Suzuki, T. Deposit date: 2022-06-22 Release date: 2023-10-25 Last modified: 2023-12-27 Method: ELECTRON MICROSCOPY (2.43 Å) Cite: Glycosylated queuosines in tRNAs optimize translational rate and post-embryonic growth. Cell, 186, 2023
7Y7E	Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU) Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Ishiguro, K, Yokoyama, T, Shirouzu, M, Suzuki, T. Deposit date: 2022-06-22 Release date: 2023-10-25 Last modified: 2023-12-27 Method: ELECTRON MICROSCOPY (2.41 Å) Cite: Glycosylated queuosines in tRNAs optimize translational rate and post-embryonic growth. Cell, 186, 2023
7Y7G	Structure of the Bacterial Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Ishiguro, K, Yokoyama, T, Shirouzu, M, Suzuki, T. Deposit date: 2022-06-22 Release date: 2023-10-25 Last modified: 2023-12-27 Method: ELECTRON MICROSCOPY (2.34 Å) Cite: Glycosylated queuosines in tRNAs optimize translational rate and post-embryonic growth. Cell, 186, 2023
7ZJX	Rabbit 80S ribosome programmed with SECIS and SBP2 Descriptor: 18S rRNA, 28S rRNA, 40S Ribosomal protein eS19, ... Authors: Hilal, T, Simonovic, M, Spahn, C.M.T. Deposit date: 2022-04-12 Release date: 2022-09-07 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structure of the mammalian ribosome as it decodes the selenocysteine UGA codon. Science, 376, 2022
7ZAI	Cryo-EM structure of a Pyrococcus abyssi 30S bound to Met-initiator tRNA, mRNA and aIF1A. Descriptor: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... Authors: Coureux, P.D, Bourgeois, G, Mechulam, Y, Schmitt, E, Kazan, R. Deposit date: 2022-03-22 Release date: 2022-07-13 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (2.6 Å) Cite: Role of aIF5B in archaeal translation initiation. Nucleic Acids Res., 50, 2022
4DR2	Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with multiple copies of paromomycin molecules bound Descriptor: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... Authors: Demirci, H, Murphy IV, F, Murphy, E, Gregory, S.T, Dahlberg, A.E, Jogl, G. Deposit date: 2012-02-16 Release date: 2012-11-14 Last modified: 2013-01-30 Method: X-RAY DIFFRACTION (3.249 Å) Cite: A structural basis for streptomycin-induced misreading of the genetic code. Nat Commun, 4, 2013
6BOH	Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Svidritskiy, E, Korostelev, A.A. Deposit date: 2017-11-20 Release date: 2018-05-23 Last modified: 2019-12-25 Method: X-RAY DIFFRACTION (3.4 Å) Cite: Conformational Control of Translation Termination on the 70S Ribosome. Structure, 26, 2018
6BY1	E. coli pH03H9 complex Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Amiri, H, Noller, H.F. Deposit date: 2017-12-19 Release date: 2019-02-27 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (3.94 Å) Cite: Structural evidence for product stabilization by the ribosomal mRNA helicase. Rna, 25, 2019
4DV4	Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, A914G Descriptor: 16S rRNA, MAGNESIUM ION, ZINC ION, ... Authors: Demirci, H, Murphy IV, F, Murphy, E, Gregory, S.T, Dahlberg, A.E, Jogl, G. Deposit date: 2012-02-22 Release date: 2013-02-27 Method: X-RAY DIFFRACTION (3.651 Å) Cite: A structural basis for streptomycin resistance To be Published
4DR5	Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered cognate transfer RNA anticodon stem-loop and streptomycin bound Descriptor: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... Authors: Demirci, H, Murphy IV, F, Murphy, E, Gregory, S.T, Dahlberg, A.E, Jogl, G. Deposit date: 2012-02-16 Release date: 2012-11-14 Last modified: 2013-01-30 Method: X-RAY DIFFRACTION (3.45 Å) Cite: A structural basis for streptomycin-induced misreading of the genetic code. Nat Commun, 4, 2013
6C5L	Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus) Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Zeng, F, Jin, H. Deposit date: 2018-01-16 Release date: 2018-02-21 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Conformation of methylated GGQ in the Peptidyl Transferase Center during Translation Termination. Sci Rep, 8, 2018
6BZ7	Thermus thermophilus 70S containing 16S G299A point mutation and near-cognate ASL Leucine in A site. Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Hoffer, E.D, Maehigashi, T, Fagan, C.E, Dunham, C.M. Deposit date: 2017-12-22 Release date: 2018-11-14 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (3.68 Å) Cite: Ribosomal ambiguity (ram) mutations promote the open (off) to closed (on) transition and thereby increase miscoding. Nucleic Acids Res., 47, 2019
6CAE	Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... Authors: Pantel, L, Florin, T, Dobosz-Bartoszek, M, Racine, E, Sarciaux, M, Serri, M, Houard, J, Campagne, J.M, Marcia de Figueiredo, R, Midrier, C, Gaudriault, S, Givaudan, A, Lanois, A, Forst, S, Aumelas, A, Cotteaux-Lautard, C, Bolla, J.M, Vingsbo Lundberg, C, Huseby, D, Hughes, D, Villain-Guillot, P, Mankin, A.S, Polikanov, Y.S, Gualtieri, M. Deposit date: 2018-01-30 Release date: 2018-04-18 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Odilorhabdins, Antibacterial Agents that Cause Miscoding by Binding at a New Ribosomal Site. Mol. Cell, 70, 2018
7ZJW	Rabbit 80S ribosome as it decodes the Sec-UGA codon Descriptor: 18S rRNA, 28S rRNA, 40S Ribosomal protein eS19, ... Authors: Hilal, T, Simonovic, M, Spahn, C.M.T. Deposit date: 2022-04-12 Release date: 2022-10-19 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Structure of the mammalian ribosome as it decodes the selenocysteine UGA codon. Science, 376, 2022
6CAS	Serial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with N1MS Descriptor: 16S Ribosomal RNA rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... Authors: DeMirci, H. Deposit date: 2018-01-31 Release date: 2018-07-25 Last modified: 2018-10-24 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Aminoglycoside ribosome interactions reveal novel conformational states at ambient temperature. Nucleic Acids Res., 46, 2018
7ZAG	Cryo-EM structure of a Pyrococcus abyssi 30S bound to Met-initiator tRNA,mRNA, aIF1A and the C-terminal domain of aIF5B. Descriptor: 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, ... Authors: Coureux, P.D, Bourgeois, G, Mechulam, Y, Schmitt, E, Kazan, R. Deposit date: 2022-03-22 Release date: 2022-08-03 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (2.77 Å) Cite: Role of aIF5B in archaeal translation initiation. Nucleic Acids Res., 50, 2022
7ZAH	Cryo-EM structure of a Pyrococcus abyssi 30S bound to Met-initiator tRNA, mRNA, aIF1A and aIF5B Descriptor: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... Authors: Coureux, P.D, Bourgeois, G, Mechulam, Y, Schmitt, E, Kazan, R. Deposit date: 2022-03-22 Release date: 2022-08-03 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: Role of aIF5B in archaeal translation initiation. Nucleic Acids Res., 50, 2022
6C4I	Conformation of methylated GGQ in the peptidyl transferase center during translation termination Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Zeng, F, Jin, H. Deposit date: 2018-01-12 Release date: 2018-02-21 Last modified: 2020-01-08 Method: ELECTRON MICROSCOPY (3.24 Å) Cite: Conformation of methylated GGQ in the Peptidyl Transferase Center during Translation Termination. Sci Rep, 8, 2018
6CAP	Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin Descriptor: (1S,2S,3R,4S,6R)-4,6-diamino-3-{[(2S,3R)-3-amino-6-(aminomethyl)-3,4-dihydro-2H-pyran-2-yl]oxy}-2-hydroxycyclohexyl 3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranoside, 16S Ribosomal RNA rRNA, 30S ribosomal protein S10, ... Authors: DeMirci, H. Deposit date: 2018-01-31 Release date: 2018-07-25 Last modified: 2020-10-21 Method: X-RAY DIFFRACTION (3.4 Å) Cite: Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin To Be Published

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