PDB: 469 resultsInfo pagesStatus searchChemie searchBIRD

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7L8G	BG505 SOSIP.v5.2(7S) in complex with the polyclonal Fab pAbC-3 from animal Rh.33172 (Wk38 time point) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp160, ... Authors: Antanasijevic, A, Sewall, L.M, Rantalainen, K, Ward, A.B. Deposit date: 2020-12-31 Release date: 2021-08-04 Last modified: 2021-09-08 Method: ELECTRON MICROSCOPY (4.3 Å) Cite: Polyclonal antibody responses to HIV Env immunogens resolved using cryoEM. Nat Commun, 12, 2021
7L8S	BG505 SOSIP.v5.2(7S) in complex with the polyclonal Fab pAbC-4 from animal Rh.33172 (Wk38 time point) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BG505 SOSIP.v5.2(7S) - gp120, ... Authors: Antanasijevic, A, Sewall, L.M, Ward, A.B. Deposit date: 2020-12-31 Release date: 2021-08-04 Last modified: 2021-08-25 Method: ELECTRON MICROSCOPY (4.3 Å) Cite: Polyclonal antibody responses to HIV Env immunogens resolved using cryoEM. Nat Commun, 12, 2021
7L8T	BG505 SOSIP.v5.2 N241/N289 in complex with the polyclonal Fab pAbC-1 from animal Rh.33311 (Wk26 time point) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BG505 SOSIP.v5.2 N241/N289 - gp120, ... Authors: Antanasijevic, A, Sewall, L.M, Ward, A.B. Deposit date: 2020-12-31 Release date: 2021-08-04 Last modified: 2021-08-25 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Polyclonal antibody responses to HIV Env immunogens resolved using cryoEM. Nat Commun, 12, 2021
7L8U	BG505 SOSIP.v5.2 N241/N289 in complex with the polyclonal Fab pAbC-2 from animal Rh.33311 (Wk26 time point) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BG505 SOSIP.v5.2 N241/N289 - gp120, ... Authors: Antanasijevic, A, Sewall, L.M, Rantalainen, K, Ward, A.B. Deposit date: 2021-01-01 Release date: 2021-08-04 Last modified: 2021-08-25 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Polyclonal antibody responses to HIV Env immunogens resolved using cryoEM. Nat Commun, 12, 2021
7L8W	BG505 SOSIP.v5.2 N241/N289 in complex with the polyclonal Fab pAbC-3 from animal Rh.33311 (Wk26 time point) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BG505 SOSIP.v5.2 N241/N289 - gp120, ... Authors: Antanasijevic, A, Sewall, L.M, Ward, A.B. Deposit date: 2021-01-01 Release date: 2021-08-04 Last modified: 2021-08-25 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: Polyclonal antibody responses to HIV Env immunogens resolved using cryoEM. Nat Commun, 12, 2021
7L8X	BG505 SOSIP.v5.2 N241/N289 in complex with the polyclonal Fab pAbC-4 from animal Rh.33311 (Wk26 time point) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BG505 SOSIP.v5.2 N241/N289 - gp120, ... Authors: Antanasijevic, A, Sewall, L.M, Yang, Y.R, Ward, A.B. Deposit date: 2021-01-01 Release date: 2021-08-04 Last modified: 2021-08-25 Method: ELECTRON MICROSCOPY (3 Å) Cite: Polyclonal antibody responses to HIV Env immunogens resolved using cryoEM. Nat Commun, 12, 2021
7L8Y	BG505 SOSIP.v5.2 N241/N289 in complex with the polyclonal Fab pAbC-5 from animal Rh.33311 (Wk26 time point) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BG505 SOSIP.v5.2 N241/N289 - gp120, ... Authors: Antanasijevic, A, Sewall, L.M, Cannac, F, Ward, A.B. Deposit date: 2021-01-01 Release date: 2021-08-04 Last modified: 2021-08-25 Method: ELECTRON MICROSCOPY (4.2 Å) Cite: Polyclonal antibody responses to HIV Env immunogens resolved using cryoEM. Nat Commun, 12, 2021
7L8Z	BG505 SOSIP.v5.2 N241/N289 in complex with the polyclonal Fab pAbC-7 from animal Rh.33311 (Wk26 time point) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BG505 SOSIP.v5.2 N241/N289 - gp120, ... Authors: Antanasijevic, A, Sewall, L.M, Perrett, H.R, Ward, A.B. Deposit date: 2021-01-01 Release date: 2021-08-04 Last modified: 2021-08-25 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Polyclonal antibody responses to HIV Env immunogens resolved using cryoEM. Nat Commun, 12, 2021
7L90	BG505 SOSIP.v5.2 N241/N289 in complex with the polyclonal Fab pAbC-8 from animal Rh.33311 (Wk26 time point) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BG505 SOSIP.v5.2 N241/N289 - gp120, ... Authors: Antanasijevic, A, Sewall, L.M, Ward, A.B. Deposit date: 2021-01-01 Release date: 2021-08-04 Last modified: 2021-08-25 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Polyclonal antibody responses to HIV Env immunogens resolved using cryoEM. Nat Commun, 12, 2021
7LG6	BG505 SOSIP.v5.2 in complex with VRC40.01 and RM19R Fabs Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp120, ... Authors: Cottrell, C.A, Torres, J.L, Wu, N.R, Ward, A.B. Deposit date: 2021-01-19 Release date: 2021-09-15 Last modified: 2021-11-17 Method: ELECTRON MICROSCOPY (3.28 Å) Cite: Structural basis of glycan276-dependent recognition by HIV-1 broadly neutralizing antibodies. Cell Rep, 37, 2021
7LL1	Cryo-EM structure of BG505 DS-SOSIP in complex with glycan276-dependent broadly neutralizing antibody VRC40.01 Fab Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp120, Envelope glycoprotein gp41, ... Authors: Manne, K, Acharya, P. Deposit date: 2021-02-03 Release date: 2021-03-17 Last modified: 2021-11-17 Method: ELECTRON MICROSCOPY (3.73 Å) Cite: Structural basis of glycan276-dependent recognition by HIV-1 broadly neutralizing antibodies. Cell Rep, 37, 2021
7LL2	Cryo-EM structure of BG505 DS-SOSIP in complex with Glycan276-Dependent Broadly Neutralizing Antibody VRC33.01 Fab Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp120, ... Authors: Manne, K, Acharya, P. Deposit date: 2021-02-03 Release date: 2021-03-17 Last modified: 2021-11-17 Method: ELECTRON MICROSCOPY (3.73 Å) Cite: Structural basis of glycan276-dependent recognition by HIV-1 broadly neutralizing antibodies. Cell Rep, 37, 2021
7LLK	Cryo-EM structure of Q23.17_DS-SOSIP in complex with Glycan276-Dependent Broadly Neutralizing Antibody 179NC75 Fab Descriptor: 179NC75 Fab Heavy chain, 179NC75 Fab Light chain, 2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Manne, K, Acharya, P. Deposit date: 2021-02-04 Release date: 2021-06-02 Last modified: 2021-11-17 Method: ELECTRON MICROSCOPY (4.8 Å) Cite: Structural basis of glycan276-dependent recognition by HIV-1 broadly neutralizing antibodies. Cell Rep, 37, 2021
7LO6	Structure of CD4 mimetic BNM-III-170 in complex with BG505 SOSIP.664 HIV-1 Env trimer and 17b Fab Descriptor: 17b Fab Heavy Chain, 17b Fab Light Chain, 2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Jette, C.A, Bjorkman, P.J. Deposit date: 2021-02-09 Release date: 2021-04-14 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Cryo-EM structures of HIV-1 trimer bound to CD4-mimetics BNM-III-170 and M48U1 adopt a CD4-bound open conformation. Nat Commun, 12, 2021
7LOK	Structure of CD4 mimetic M48U1 in complex with BG505 SOSIP.664 HIV-1 Env trimer and 17b Fab Descriptor: 17b Fab Heavy Chain, 17b Fab Light Chain, 2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Jette, C.A, Bjorkman, P.J. Deposit date: 2021-02-10 Release date: 2021-04-14 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Cryo-EM structures of HIV-1 trimer bound to CD4-mimetics BNM-III-170 and M48U1 adopt a CD4-bound open conformation. Nat Commun, 12, 2021
7LPN	Cryo-EM structure of llama J3 VHH antibody in complex with HIV-1 Env BG505 DS-SOSIP.664 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp160, ... Authors: Gorman, J, Kwong, P.D. Deposit date: 2021-02-12 Release date: 2022-02-23 Last modified: 2023-03-29 Method: ELECTRON MICROSCOPY (3.61 Å) Cite: Structural basis for llama nanobody recognition and neutralization of HIV-1 at the CD4-binding site. Structure, 30, 2022
7LU9	Cryo-EM structure of DH851.3 bound to HIV-1 CH505 Env Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Manne, K, Edwards, R.J, Acharya, P. Deposit date: 2021-02-21 Release date: 2021-03-24 Last modified: 2021-06-09 Method: ELECTRON MICROSCOPY (5.6 Å) Cite: Fab-dimerized glycan-reactive antibodies are a structural category of natural antibodies. Cell, 184, 2021
7LUA	Cryo-EM structure of DH898.1 Fab-dimer bound near the CD4 binding site of HIV-1 Env CH848 SOSIP trimer Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CH848 SOSIP gp120, ... Authors: Manne, K, Edwards, R.J, Acharya, P. Deposit date: 2021-02-21 Release date: 2021-03-17 Last modified: 2021-06-09 Method: ELECTRON MICROSCOPY (4.7 Å) Cite: Fab-dimerized glycan-reactive antibodies are a structural category of natural antibodies. Cell, 184, 2021
7LY9	Cryo-EM structure of 2909 Fab in complex with 3BNC117 Fab and CAP256.wk34.c80 SOSIP.RnS2 N160K HIV-1 Env trimer Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2909 Heavy Chain, ... Authors: Gorman, J, Kwong, P.D. Deposit date: 2021-03-06 Release date: 2021-08-18 Last modified: 2021-11-24 Method: ELECTRON MICROSCOPY (3.91 Å) Cite: Extended antibody-framework-to-antigen distance observed exclusively with broad HIV-1-neutralizing antibodies recognizing glycan-dense surfaces. Nat Commun, 12, 2021
7MDT	BG505 SOSIP.v5.2 in complex with the monoclonal antibody Rh4O9.8 (as Fab fragment) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Rh4O9.8 monoclonal antibody Heavy Chain, ... Authors: Antanasijevic, A, Ozorowski, G, Nogal, B, Ward, A.B. Deposit date: 2021-04-06 Release date: 2022-01-26 Last modified: 2022-02-02 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: From structure to sequence: Antibody discovery using cryoEM. Sci Adv, 8, 2022
7MDU	BG505 SOSIP MD39 in complex with the monoclonal antibodies Rh.33104 mAb.1 and RM20A3 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, RM20A3 mAb Heavy Chain, ... Authors: Antanasijevic, A, Ward, A.B. Deposit date: 2021-04-06 Release date: 2022-01-26 Last modified: 2022-02-02 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: From structure to sequence: Antibody discovery using cryoEM. Sci Adv, 8, 2022
7MEP	BG505 SOSIP.v5.2(7S) in complex with the monoclonal antibodies Rh.33172 mAb.1 and RM19R Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BG505 SOSIPv5.2(7S) - gp120, ... Authors: Antanasijevic, A, Ward, A.B. Deposit date: 2021-04-07 Release date: 2022-01-26 Last modified: 2022-08-10 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: From structure to sequence: Antibody discovery using cryoEM. Sci Adv, 8, 2022
7MXD	Cryo-EM structure of broadly neutralizing V2-apex-targeting antibody J038 in complex with HIV-1 Env Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 3BNC117 antibody heavy chain, ... Authors: Zhou, T, Gao, F. Deposit date: 2021-05-19 Release date: 2022-03-30 Last modified: 2022-06-22 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Development of Neutralization Breadth against Diverse HIV-1 by Increasing Ab-Ag Interface on V2. Adv Sci, 9, 2022
7MXE	Ab1245 Fab in complex with BG505 SOSIP.664 and 8ANC195 Fab Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 8ANC195 G52K5 Fab heavy chain, ... Authors: Abernathy, M.E, Bjorkman, P.J. Deposit date: 2021-05-19 Release date: 2021-10-27 Last modified: 2021-11-03 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Antibody elicited by HIV-1 immunogen vaccination in macaques displaces Env fusion peptide and destroys a neutralizing epitope. Npj Vaccines, 6, 2021
7N28	Cryo-EM structure of broadly neutralizing V2-apex-targeting antibody J033 in complex with HIV-1 Env Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 3BNC117 antibody heavy chain, ... Authors: Zhou, T, Gao, F. Deposit date: 2021-05-28 Release date: 2022-04-06 Last modified: 2022-06-22 Method: ELECTRON MICROSCOPY (4.2 Å) Cite: Development of Neutralization Breadth against Diverse HIV-1 by Increasing Ab-Ag Interface on V2. Adv Sci, 9, 2022

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