PDB: 1416 resultsInfo pagesStatus searchChemie searchBIRD

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2N13	Complex structure of MyUb (1080-1122) of human Myosin VI with K63-diUb Descriptor: Ubiquitin, Unconventional myosin-VI Authors: He, F, Walters, K. Deposit date: 2015-03-20 Release date: 2016-03-09 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Myosin VI Contains a Compact Structural Motif that Binds to Ubiquitin Chains. Cell Rep, 14, 2016
2N2K	Ensemble structure of the closed state of Lys63-linked diubiquitin in the absence of a ligand Descriptor: S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate, ubiquitin Authors: Liu, Z, Gong, Z, Tang, C. Deposit date: 2015-05-10 Release date: 2015-07-08 Last modified: 2015-09-23 Method: SOLUTION NMR Cite: Lys63-linked ubiquitin chain adopts multiple conformational states for specific target recognition. Elife, 4, 2015
2N3U	Solution structure of the Rpn1 T1 site engaging two monoubiquitin molecules Descriptor: 26S proteasome regulatory subunit RPN1, Ubiquitin-60S ribosomal protein L40 Authors: Chen, X, Walters, K.J. Deposit date: 2015-06-10 Release date: 2016-02-24 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Rpn1 provides adjacent receptor sites for substrate binding and deubiquitination by the proteasome. Science, 351, 2016
2N3V	Solution structure of the Rpn1 T1 site with K48-linked diubiquitin in the extended binding mode Descriptor: 26S proteasome regulatory subunit RPN1, Ubiquitin-60S ribosomal protein L40 Authors: Chen, X, Walters, K.J. Deposit date: 2015-06-10 Release date: 2016-02-24 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Rpn1 provides adjacent receptor sites for substrate binding and deubiquitination by the proteasome. Science, 351, 2016
2N3W	Solution structure of the Rpn1 T1 site with K48-linked diubiquitin in the contracted binding mode Descriptor: 26S proteasome regulatory subunit RPN1, Ubiquitin-60S ribosomal protein L40 Authors: Chen, X, Walters, K.J. Deposit date: 2015-06-10 Release date: 2016-02-24 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Rpn1 provides adjacent receptor sites for substrate binding and deubiquitination by the proteasome. Science, 351, 2016
2N4F	EC-NMR Structure of Arabidopsis thaliana At2g32350 Determined by Combining Evolutionary Couplings (EC) and Sparse NMR Data. Northeast Structural Genomics Consortium target AR3433A Descriptor: uncharacterized protein AR3433A Authors: Tang, Y, Huang, Y.J, Hopf, T.A, Sander, C, Marks, D, Montelione, G.T, Northeast Structural Genomics Consortium (NESG) Deposit date: 2015-06-17 Release date: 2015-07-01 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Protein structure determination by combining sparse NMR data with evolutionary couplings. Nat.Methods, 12, 2015
2N7D	Solution structure of the UBL domain of human Ddi2 Descriptor: Protein DDI1 homolog 2 Authors: Siva, M, Grantz Saskova, K, Veverka, V. Deposit date: 2015-09-08 Release date: 2016-07-20 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Human DNA-Damage-Inducible 2 Protein Is Structurally and Functionally Distinct from Its Yeast Ortholog. Sci Rep, 6, 2016
2N7K	Unveiling the structural determinants of KIAA0323 binding preference for NEDD8 Descriptor: NEDD8, Protein KHNYN Authors: Santonico, E, Nepravishta, R, Mattioni, A, Valentini, E, Mandaliti, W, Procopio, R, Iannuccelli, M, Castagnoli, L, Polo, S, Paci, M, Cesareni, G. Deposit date: 2015-09-14 Release date: 2016-09-14 Method: SOLUTION NMR Cite: Unveiling the structural determinants of KIAA0323 binding preference for NEDD8 To be Published
2N9P	Solution structure of RNF126 N-terminal zinc finger domain in complex with BAG6 Ubiquitin-like domain Descriptor: E3 ubiquitin-protein ligase RNF126, Large proline-rich protein BAG6, ZINC ION Authors: Martinez-Lumbreras, S, Krysztofinska, E.M, Thapaliya, A, Isaacson, R.L. Deposit date: 2015-12-01 Release date: 2016-05-25 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Structural and functional insights into the E3 ligase, RNF126. Sci Rep, 6, 2016
2NBD	Solution structure of V26A mutant of Ubiquitin at pH 6.0 Descriptor: entity Authors: Surana, P, Das, R. Deposit date: 2016-02-04 Release date: 2016-05-18 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Observing a late folding intermediate of Ubiquitin at atomic resolution by NMR Protein Sci., 25, 2016
2NBE	Solution structure of V26A mutant of Ubiquitin at pH 2.0 Descriptor: entity Authors: Surana, P, Das, R. Deposit date: 2016-02-04 Release date: 2016-05-18 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Observing a late folding intermediate of Ubiquitin at atomic resolution by NMR Protein Sci., 25, 2016
2NBU	Solution structure of the Rad23 ubiquitin-like (UBL) domain Descriptor: UV excision repair protein RAD23 Authors: Chen, X, Walters, K.J. Deposit date: 2016-03-12 Release date: 2016-07-20 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Structures of Rpn1 T1:Rad23 and hRpn13:hPLIC2 Reveal Distinct Binding Mechanisms between Substrate Receptors and Shuttle Factors of the Proteasome. Structure, 24, 2016
2NBV	Solution structure of the Rpn13 Pru domain engaging the hPLIC2 UBL domain Descriptor: Proteasomal ubiquitin receptor ADRM1, Ubiquilin-2 Authors: Chen, X, Walters, K.J. Deposit date: 2016-03-12 Release date: 2016-07-20 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Structures of Rpn1 T1:Rad23 and hRpn13:hPLIC2 Reveal Distinct Binding Mechanisms between Substrate Receptors and Shuttle Factors of the Proteasome. Structure, 24, 2016
2NBW	Solution structure of the Rpn1 T1 site with the Rad23 UBL domain Descriptor: 26S proteasome regulatory subunit RPN1, UV excision repair protein RAD23 Authors: Chen, X, Walters, K.J. Deposit date: 2016-03-14 Release date: 2016-07-20 Last modified: 2016-08-17 Method: SOLUTION NMR Cite: Structures of Rpn1 T1:Rad23 and hRpn13:hPLIC2 Reveal Distinct Binding Mechanisms between Substrate Receptors and Shuttle Factors of the Proteasome. Structure, 24, 2016
2NR2	The MUMO (minimal under-restraining minimal over-restraining) method for the determination of native states ensembles of proteins Descriptor: Ubiquitin Authors: Richter, B, Gsponer, J, Varnai, P, Salvatella, X, Vendruscolo, M. Deposit date: 2006-11-01 Release date: 2007-05-08 Last modified: 2023-12-27 Method: SOLUTION NMR Cite: The MUMO (minimal under-restraining minimal over-restraining) method for the determination of native state ensembles of proteins J.Biomol.Nmr, 37, 2007
2NVU	Structure of APPBP1-UBA3~NEDD8-NEDD8-MgATP-Ubc12(C111A), a trapped ubiquitin-like protein activation complex Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera, ... Authors: Huang, D.T, Hunt, H.W, Zhuang, M, Ohi, M.D, Holton, J.M, Schulman, B.A. Deposit date: 2006-11-13 Release date: 2007-01-30 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Basis for a ubiquitin-like protein thioester switch toggling E1-E2 affinity. Nature, 445, 2007
2O6V	Crystal structure and solution NMR studies of Lys48-linked tetraubiquitin at neutral pH Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, SULFATE ION, Ubiquitin Authors: Eddins, M.J, Wolberger, C. Deposit date: 2006-12-08 Release date: 2007-02-13 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystal Structure and Solution NMR Studies of Lys48-linked Tetraubiquitin at Neutral pH J.Mol.Biol., 367, 2007
2OJR	Structure of ubiquitin solved by SAD using the Lanthanide-Binding Tag Descriptor: TERBIUM(III) ION, Ubiquitin Authors: Silvaggi, N.R, Allen, K.N. Deposit date: 2007-01-13 Release date: 2007-06-12 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Double-Lanthanide-Binding Tags for Macromolecular Crystallographic Structure Determination. J.Am.Chem.Soc., 129, 2007
2OOB	crystal structure of the UBA domain from Cbl-b ubiquitin ligase in complex with ubiquitin Descriptor: E3 ubiquitin-protein ligase CBL-B, Ubiquitin Authors: Kozlov, G, Gehring, K. Deposit date: 2007-01-25 Release date: 2007-02-06 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structural basis for ubiquitin-mediated dimerization and activation of the ubiquitin protein ligase Cbl-b. Mol.Cell, 27, 2007
2PE9	NMR Based Structure of the Open Conformation of LYS48-Linked Di-UBiquitin Using Experimental Global Rotational Diffusion Tensor from NMR Relaxation Measurements Descriptor: Ubiquitin Authors: Ryabov, Y, Fushman, D. Deposit date: 2007-04-02 Release date: 2007-07-10 Last modified: 2022-03-16 Method: SOLUTION NMR Cite: Structural assembly of multidomain proteins and protein complexes guided by the overall rotational diffusion tensor. J.Am.Chem.Soc., 129, 2007
2PEA	NMR Based Structure of the Closed Conformation of LYS48-Linked Di-Ubiquitin Using Experimental Global Rotational Diffusion Tensor from NMR Relaxation Measurements Descriptor: Ubiquitin Authors: Ryabov, Y, Fushman, D. Deposit date: 2007-04-02 Release date: 2007-07-10 Last modified: 2022-03-16 Method: SOLUTION NMR Cite: Structural assembly of multidomain proteins and protein complexes guided by the overall rotational diffusion tensor. J.Am.Chem.Soc., 129, 2007
2QHO	Crystal structure of the UBA domain from EDD ubiquitin ligase in complex with ubiquitin Descriptor: E3 ubiquitin-protein ligase EDD1, Ubiquitin Authors: Kozlov, G, Gehring, K. Deposit date: 2007-07-02 Release date: 2007-09-25 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Structural basis of ubiquitin recognition by the ubiquitin-associated (UBA) domain of the ubiquitin ligase EDD. J.Biol.Chem., 282, 2007
2RR9	The solution structure of the K63-Ub2:tUIMs complex Descriptor: Putative uncharacterized protein UIMC1, ubiquitin Authors: Sekiyama, N, Jee, J, Isogai, S, Akagi, K, Huang, T, Ariyoshi, M, Tochio, H, Shirakawa, M. Deposit date: 2010-06-16 Release date: 2011-07-06 Last modified: 2011-07-13 Method: SOLUTION NMR Cite: The solution structure of the K63-Ub2:tUIMs complex To be Published
2RSU	Alternative structure of Ubiquitin Descriptor: Ubiquitin Authors: Kitazawa, S, Kameda, T, Yagi-Utsumi, M, Kato, K, Kitahara, R. Deposit date: 2012-06-15 Release date: 2013-03-27 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Solution Structure of the Q41N Variant of Ubiquitin as a Model for the Alternatively Folded N2 State of Ubiquitin Biochemistry, 52, 2013
2RU6	The pure alternative state of ubiquitin Descriptor: Ubiquitin Authors: Kitazawa, S, Kameda, T, Kumo, A, Utsumi, M, Baxter, N, Kato, K, Williamson, M.P, Kitahara, R. Deposit date: 2013-12-04 Release date: 2014-02-12 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Close Identity between Alternatively Folded State N2 of Ubiquitin and the Conformation of the Protein Bound to the Ubiquitin-Activating Enzyme Biochemistry, 53, 2014

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