Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6DHG
DownloadVisualize
BU of 6dhg by Molmil
RT XFEL structure of Photosystem II 150 microseconds after the second illumination at 2.5 Angstrom resolution
Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ...
Authors:Kern, J, Chatterjee, R, Young, I.D, Fuller, F.D, Lassalle, L, Ibrahim, M, Gul, S, Fransson, T, Brewster, A.S, Alonso-Mori, R, Hussein, R, Zhang, M, Douthit, L, de Lichtenberg, C, Cheah, M.H, Shevela, D, Wersig, J, Seufert, I, Sokaras, D, Pastor, E, Weninger, C, Kroll, T, Sierra, R.G, Aller, P, Butryn, A, Orville, A.M, Liang, M, Batyuk, A, Koglin, J.E, Carbajo, S, Boutet, S, Moriarty, N.W, Holton, J.M, Dobbek, H, Adams, P.D, Bergmann, U, Sauter, N.K, Zouni, A, Messinger, J, Yano, J, Yachandra, V.K.
Deposit date:2018-05-20
Release date:2018-11-21
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structures of the intermediates of Kok's photosynthetic water oxidation clock.
Nature, 563, 2018
6DHO
DownloadVisualize
BU of 6dho by Molmil
RT XFEL structure of the two-flash state of Photosystem II (2F, S3-rich) at 2.07 Angstrom resolution
Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ...
Authors:Kern, J, Chatterjee, R, Young, I.D, Fuller, F.D, Lassalle, L, Ibrahim, M, Gul, S, Fransson, T, Brewster, A.S, Alonso-Mori, R, Hussein, R, Zhang, M, Douthit, L, de Lichtenberg, C, Cheah, M.H, Shevela, D, Wersig, J, Seufert, I, Sokaras, D, Pastor, E, Weninger, C, Kroll, T, Sierra, R.G, Aller, P, Butryn, A, Orville, A.M, Liang, M, Batyuk, A, Koglin, J.E, Carbajo, S, Boutet, S, Moriarty, N.W, Holton, J.M, Dobbek, H, Adams, P.D, Bergmann, U, Sauter, N.K, Zouni, A, Messinger, J, Yano, J, Yachandra, V.K.
Deposit date:2018-05-20
Release date:2018-11-21
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Structures of the intermediates of Kok's photosynthetic water oxidation clock.
Nature, 563, 2018
6DHE
DownloadVisualize
BU of 6dhe by Molmil
RT XFEL structure of the dark-stable state of Photosystem II (0F, S1-rich) at 2.05 Angstrom resolution
Descriptor: (6'R,11cis,11'cis,13cis,15cis)-4',5'-didehydro-5',6'-dihydro-beta,beta-carotene, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ...
Authors:Kern, J, Chatterjee, R, Young, I.D, Fuller, F.D, Lassalle, L, Ibrahim, M, Gul, S, Fransson, T, Brewster, A.S, Alonso-Mori, R, Hussein, R, Zhang, M, Douthit, L, de Lichtenberg, C, Cheah, M.H, Shevela, D, Wersig, J, Seufert, I, Sokaras, D, Pastor, E, Weninger, C, Kroll, T, Sierra, R.G, Aller, P, Butryn, A, Orville, A.M, Liang, M, Batyuk, A, Koglin, J.E, Carbajo, S, Boutet, S, Moriarty, N.W, Holton, J.M, Dobbek, H, Adams, P.D, Bergmann, U, Sauter, N.K, Zouni, A, Messinger, J, Yano, J, Yachandra, V.K.
Deposit date:2018-05-20
Release date:2018-11-21
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structures of the intermediates of Kok's photosynthetic water oxidation clock.
Nature, 563, 2018
1R5P
DownloadVisualize
BU of 1r5p by Molmil
Crystal Structure Analysis of KaiB from PCC7120
Descriptor: circadian oscillation regulator
Authors:Garces, R.G, Wu, N, Gillon, W, Pai, E.F.
Deposit date:2003-10-12
Release date:2004-05-04
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Anabaena circadian clock proteins KaiA and KaiB reveal a potential common binding site to their partner KaiC
Embo J., 23, 2004
1R5Q
DownloadVisualize
BU of 1r5q by Molmil
Crystal Structure Analysis of Kai A from PCC7120
Descriptor: circadian oscillation regulator
Authors:Garces, R.G, Wu, N, Gillon, W, Pai, E.F.
Deposit date:2003-10-12
Release date:2004-05-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Anabaena circadian clock proteins KaiA and KaiB reveal a potential common binding site to their partner KaiC
Embo J., 23, 2004
5N8Y
DownloadVisualize
BU of 5n8y by Molmil
KaiCBA circadian clock backbone model based on a Cryo-EM density
Descriptor: Circadian clock protein KaiA, Circadian clock protein KaiB, Circadian clock protein kinase KaiC
Authors:Schuller, J.M, Snijder, J, Loessl, P, Heck, A.J.R, Foerster, F.
Deposit date:2017-02-24
Release date:2017-03-29
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:Structures of the cyanobacterial circadian oscillator frozen in a fully assembled state.
Science, 355, 2017
5YZ8
DownloadVisualize
BU of 5yz8 by Molmil
Crystal Structure of N-terminal C1 domain of KaiC
Descriptor: CHLORIDE ION, Circadian Clock Protein Kinase KaiC, MAGNESIUM ION, ...
Authors:Mukaiyama, A, Furuike, Y, Abe, J, Akiyama, S.
Deposit date:2017-12-13
Release date:2019-01-30
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:Conformational rearrangements of the C1 ring in KaiC measure the timing of assembly with KaiB.
Sci Rep, 8, 2018
4KSO
DownloadVisualize
BU of 4kso by Molmil
Crystal Structure of Circadian clock protein KaiB from S.Elongatus
Descriptor: Circadian clock protein KaiB
Authors:Pattanayek, R, Egli, M.
Deposit date:2013-05-17
Release date:2013-07-10
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.622 Å)
Cite:CryoEM and Molecular Dynamics of the Circadian KaiB-KaiC Complex Indicates KaiB Monomers Interact with KaiC and Block ATP Binding Clefts.
J.Mol.Biol., 425, 2013
8WV8
DownloadVisualize
BU of 8wv8 by Molmil
Crystal Structure of Cyanobacterial Circadian Clock Protein KaiC
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Circadian clock oscillator protein KaiC, MAGNESIUM ION
Authors:Furuike, Y, Akiyama, S.
Deposit date:2023-10-23
Release date:2023-12-27
Method:X-RAY DIFFRACTION (2.93 Å)
Cite:Structure-function relationship of KaiC around dawn
Biophys Physicobio., 20, 2023
8WVE
DownloadVisualize
BU of 8wve by Molmil
Crystal Structure of Cyanobacterial Circadian Clock Protein KaiC
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Circadian clock oscillator protein KaiC, MAGNESIUM ION
Authors:Furuike, Y, Akiyama, S.
Deposit date:2023-10-23
Release date:2023-12-27
Method:X-RAY DIFFRACTION (2.729 Å)
Cite:Structure-function relationship of KaiC around dawn
Biophys Physicobio., 20, 2023
4U8H
DownloadVisualize
BU of 4u8h by Molmil
Crystal Structure of Mammalian Period-Cryptochrome Complex
Descriptor: Cryptochrome-2, Period circadian protein homolog 2, ZINC ION
Authors:Nangle, S.N, Rosensweig, C, Koike, N, Tei, H, Takahashi, J.S, Green, C.B, Zheng, N.
Deposit date:2014-08-03
Release date:2014-10-01
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.798 Å)
Cite:Molecular assembly of the period-cryptochrome circadian transcriptional repressor complex.
Elife, 3, 2014
7WVA
DownloadVisualize
BU of 7wva by Molmil
Crystal structure of mouse Cryptochrome 1 in complex with TH401 compound
Descriptor: 2-(1-methylbenzimidazol-2-yl)sulfanyl-N-[(E)-(2,3,4-trimethoxyphenyl)methylideneamino]ethanamide, Cryptochrome-1
Authors:Miller, S.A, Hirota, T.
Deposit date:2022-02-10
Release date:2022-09-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:A methylbenzimidazole derivative regulates mammalian circadian rhythms by targeting Cryptochrome proteins.
F1000Res, 11, 2022
3RTY
DownloadVisualize
BU of 3rty by Molmil
Structure of an Enclosed Dimer Formed by The Drosophila Period Protein
Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, Period circadian protein
Authors:King, H.A, Hoelz, A, Crane, B.R, Young, M.W.
Deposit date:2011-05-04
Release date:2011-12-21
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structure of an enclosed dimer formed by the Drosophila period protein.
J.Mol.Biol., 413, 2011
6K0R
DownloadVisualize
BU of 6k0r by Molmil
Ruvbl1-Ruvbl2 with truncated domain II in complex with phosphorylated Cordycepin
Descriptor: 3'-DEOXYADENOSINE-5'-TRIPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Zhang, W, Chen, L, Li, W, Ju, D, Huang, N, Zhang, E.
Deposit date:2019-05-07
Release date:2020-05-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.502 Å)
Cite:Chemical perturbations reveal that RUVBL2 regulates the circadian phase in mammals.
Sci Transl Med, 12, 2020
5SVV
DownloadVisualize
BU of 5svv by Molmil
Structure and kinetics of the LOV domain of ZEITLUPE determine its circadian function in Arabidopsis
Descriptor: ACETATE ION, Adagio protein 1, FLAVIN MONONUCLEOTIDE, ...
Authors:Zoltowski, B, Pudasaini, A.
Deposit date:2016-08-07
Release date:2017-03-08
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.101 Å)
Cite:Kinetics of the LOV domain of ZEITLUPE determine its circadian function inArabidopsis.
Elife, 6, 2017
5SVW
DownloadVisualize
BU of 5svw by Molmil
Light-state Structure of Arabidopsis Thaliana Zeitlupe
Descriptor: Adagio protein 1, FLAVIN MONONUCLEOTIDE
Authors:Zoltowski, B, Pudasaini, A.
Deposit date:2016-08-07
Release date:2017-03-08
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Kinetics of the LOV domain of ZEITLUPE determine its circadian function inArabidopsis.
Elife, 6, 2017
5SVU
DownloadVisualize
BU of 5svu by Molmil
Structure and kinetics of the LOV domain of ZEITLUPE determine its circadian function in Arabidopsis
Descriptor: Adagio protein 1, FLAVIN MONONUCLEOTIDE
Authors:Zoltowski, B, Pudasaini, A.
Deposit date:2016-08-07
Release date:2017-03-08
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.601 Å)
Cite:Kinetics of the LOV domain of ZEITLUPE determine its circadian function inArabidopsis.
Elife, 6, 2017
5SVG
DownloadVisualize
BU of 5svg by Molmil
Structure and kinetics of the LOV domain of ZEITLUPE determine its circadian function in Arabidopsis
Descriptor: Adagio protein 1, FLAVIN MONONUCLEOTIDE
Authors:Zoltowski, B, Pudasaini, A.
Deposit date:2016-08-05
Release date:2017-03-08
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Kinetics of the LOV domain of ZEITLUPE determine its circadian function inArabidopsis.
Elife, 6, 2017
6WLP
DownloadVisualize
BU of 6wlp by Molmil
Crystal Structure of the ZTL light-state mimic G46S
Descriptor: 1,2-ETHANEDIOL, Adagio protein 1, FLAVIN MONONUCLEOTIDE
Authors:Zoltowski, B, Green, R.
Deposit date:2020-04-20
Release date:2021-03-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3 Å)
Cite:Steric and Electronic Interactions at Gln154 in ZEITLUPE Induce Reorganization of the LOV Domain Dimer Interface.
Biochemistry, 60, 2021
6WTB
DownloadVisualize
BU of 6wtb by Molmil
Sort-Tagged Drosophila Cryptochrome
Descriptor: Cryptochrome-1, FLAVIN-ADENINE DINUCLEOTIDE, MAGNESIUM ION
Authors:Schneps, C.M, Crane, B.R.
Deposit date:2020-05-02
Release date:2021-05-05
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:Tuning flavin environment to detect and control light-induced conformational switching in Drosophila cryptochrome.
Commun Biol, 4, 2021
6LUE
DownloadVisualize
BU of 6lue by Molmil
Crystal structure of mouse Cryptochrome 1 in complex with compound KL201
Descriptor: 2-bromanyl-N-(5,6,7,8-tetrahydro-[1]benzothiolo[2,3-d]pyrimidin-4-yl)benzamide, Cryptochrome-1
Authors:Miller, S, Aikawa, Y, Hirota, T.
Deposit date:2020-01-27
Release date:2020-06-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:An Isoform-Selective Modulator of Cryptochrome 1 Regulates Circadian Rhythms in Mammals.
Cell Chem Biol, 27, 2020
2PD8
DownloadVisualize
BU of 2pd8 by Molmil
1.8 Angstrom Crystal Structure of the Cys71Ser mutant of Vivid
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Vivid PAS protein VVD
Authors:Zoltowski, B.D, Crane, B.R, Bilwes, A.M.
Deposit date:2007-03-31
Release date:2007-06-05
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Conformational switching in the fungal light sensor Vivid
Science, 316, 2007
2PD7
DownloadVisualize
BU of 2pd7 by Molmil
2.0 Angstrom Crystal Structure of the Fungal Blue-Light Photoreceptor Vivid
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Vivid PAS protein VVD
Authors:Zoltowski, B.D, Crane, B.R, Bilwes, A.M.
Deposit date:2007-03-31
Release date:2007-06-05
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Conformational switching in the fungal light sensor Vivid
Science, 316, 2007
2PDR
DownloadVisualize
BU of 2pdr by Molmil
1.7 Angstrom Crystal Structure of the Photo-excited Blue-light Photoreceptor Vivid
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Vivid PAS protein VVD
Authors:Zoltowski, B.D, Crane, B.R, Bilwes, A.M.
Deposit date:2007-04-01
Release date:2007-06-05
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Conformational switching in the fungal light sensor Vivid
Science, 316, 2007
6QEC
DownloadVisualize
BU of 6qec by Molmil
DNA binding domain of LUX ARRYTHMO in complex with DNA
Descriptor: DNA (5'-D(*AP*TP*TP*CP*GP*AP*AP*TP*AP*T*TP*AP*TP*AP*TP*TP*CP*GP*AP*A)-3'), GLYCEROL, Transcription factor LUX
Authors:Zubieta, C, Nayak, A.
Deposit date:2019-01-07
Release date:2020-02-05
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Molecular mechanisms of Evening Complex activity inArabidopsis.
Proc.Natl.Acad.Sci.USA, 117, 2020

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon