PDB: 656 resultsInfo pagesStatus searchChemie searchBIRD

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6W6G	The Mycobacterium tuberculosis ClpB disaggregase hexamer structure in conformation I in the presence of DnaK chaperone and a model substrate Descriptor: ADENOSINE-5'-DIPHOSPHATE, Chaperone protein ClpB, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ... Authors: Yin, Y, Li, H. Deposit date: 2020-03-16 Release date: 2021-03-17 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structural basis for aggregate dissolution and refolding by the Mycobacterium tuberculosis ClpB-DnaK bi-chaperone system. Cell Rep, 35, 2021
6W6H	The Mycobacterium tuberculosis ClpB disaggregase hexamer structure in conformation II in the presence of DnaK chaperone and a model substrate Descriptor: ADENOSINE-5'-DIPHOSPHATE, Chaperone protein ClpB, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ... Authors: Yin, Y, Li, H. Deposit date: 2020-03-16 Release date: 2021-05-26 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Structural basis for aggregate dissolution and refolding by the Mycobacterium tuberculosis ClpB-DnaK bi-chaperone system. Cell Rep, 35, 2021
6W6I	The Mycobacterium tuberculosis ClpB disaggregase hexamer structure in conformation T in the presence of DnaK chaperone and a model substrate Descriptor: ADENOSINE-5'-DIPHOSPHATE, Chaperone protein ClpB, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ... Authors: Yin, Y, Li, H. Deposit date: 2020-03-17 Release date: 2021-05-26 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Structural basis for aggregate dissolution and refolding by the Mycobacterium tuberculosis ClpB-DnaK bi-chaperone system. Cell Rep, 35, 2021
6W6E	The Mycobacterium tuberculosis ClpB disaggregase hexamer structure with a locally refined ClpB middle domain and a DnaK nucleotide binding domain Descriptor: ADENOSINE-5'-DIPHOSPHATE, Chaperone protein ClpB, Chaperone protein DnaK, ... Authors: Yin, Y, Li, H. Deposit date: 2020-03-16 Release date: 2021-05-26 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Structural basis for aggregate dissolution and refolding by the Mycobacterium tuberculosis ClpB-DnaK bi-chaperone system. Cell Rep, 35, 2021
6W6J	The Mycobacterium tuberculosis ClpB disaggregase hexamer structure with a locally refined N-terminal domain in the presence of DnaK chaperone and a model substrate Descriptor: ADENOSINE-5'-DIPHOSPHATE, Chaperone protein ClpB, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ... Authors: Yin, Y, Li, H. Deposit date: 2020-03-17 Release date: 2021-05-26 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Structural basis for aggregate dissolution and refolding by the Mycobacterium tuberculosis ClpB-DnaK bi-chaperone system. Cell Rep, 35, 2021
6WGI	Atomic model of the mutant OCCM (ORC-Cdc6-Cdt1-Mcm2-7 with Mcm6 WHD truncation) loaded on DNA at 10.5 A resolution Descriptor: Cell division control protein 6, Cell division cycle protein CDT1, DNA (34-MER), ... Authors: Yuan, Z, Schneider, S, Dodd, T, Riera, A, Bai, L, Yan, C, Magdalou, I, Ivanov, I, Stillman, B, Li, H, Speck, C. Deposit date: 2020-04-05 Release date: 2020-07-15 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (10 Å) Cite: Structural mechanism of helicase loading onto replication origin DNA by ORC-Cdc6. Proc.Natl.Acad.Sci.USA, 117, 2020
6WJD	SA-like state of human 26S Proteasome with non-cleavable M1-linked hexaubiquitin and E3 ubiquitin ligase E6AP/UBE3A Descriptor: 26S proteasome complex subunit SEM1, 26S proteasome non-ATPase regulatory subunit 1, 26S proteasome non-ATPase regulatory subunit 11, ... Authors: Chen, X, Walters, K.J. Deposit date: 2020-04-13 Release date: 2020-08-05 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (4.8 Å) Cite: Cryo-EM Reveals Unanchored M1-Ubiquitin Chain Binding at hRpn11 of the 26S Proteasome. Structure, 28, 2020
6WGG	Atomic model of pre-insertion mutant OCCM-DNA complex(ORC-Cdc6-Cdt1-Mcm2-7 with Mcm6 WHD truncation) Descriptor: Cell division control protein 6, Cell division cycle protein CDT1, DNA (41-MER), ... Authors: Yuan, Z, Schneider, S, Dodd, T, Riera, A, Bai, L, Yan, C, Magdalou, I, Ivanov, I, Stillman, B, Li, H, Speck, C. Deposit date: 2020-04-05 Release date: 2020-07-15 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (8.1 Å) Cite: Structural mechanism of helicase loading onto replication origin DNA by ORC-Cdc6. Proc.Natl.Acad.Sci.USA, 117, 2020
6WGC	Atomic model of semi-attached mutant OCCM-DNA complex (ORC-Cdc6-Cdt1-Mcm2-7 with Mcm6 WHD truncation) Descriptor: Cell division control protein 6, DNA (41-MER), DNA replication licensing factor MCM3, ... Authors: Yuan, Z, Schneider, S, Dodd, T, Riera, A, Bai, L, Yan, C, Magdalou, I, Ivanov, I, Stillman, B, Li, H, Speck, C. Deposit date: 2020-04-05 Release date: 2020-07-15 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (4.3 Å) Cite: Structural mechanism of helicase loading onto replication origin DNA by ORC-Cdc6. Proc.Natl.Acad.Sci.USA, 117, 2020
6WJN	SD-like state of human 26S Proteasome with non-cleavable M1-linked hexaubiquitin and E3 ubiquitin ligase E6AP/UBE3A Descriptor: 26S proteasome complex subunit SEM1, 26S proteasome non-ATPase regulatory subunit 1, 26S proteasome non-ATPase regulatory subunit 11, ... Authors: Chen, X, Walters, K.J. Deposit date: 2020-04-14 Release date: 2020-08-05 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (5.7 Å) Cite: Cryo-EM Reveals Unanchored M1-Ubiquitin Chain Binding at hRpn11 of the 26S Proteasome. Structure, 28, 2020
6WQH	Molecular basis for the ATPase-powered substrate translocation by the Lon AAA+ protease Descriptor: ADENOSINE-5'-DIPHOSPHATE, Ig2 substrate, Lon protease, ... Authors: Zhang, K, Li, S, Hsiehb, K, Sub, S, Pintilie, G, Chiu, W, Chang, C. Deposit date: 2020-04-28 Release date: 2021-06-09 Last modified: 2021-11-17 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Molecular basis for ATPase-powered substrate translocation by the Lon AAA+ protease. J.Biol.Chem., 297, 2021
7X7Q	CryoEM structure of RuvA-RuvB-Holliday junction complex Descriptor: DNA (26-MER), DNA (40-MER), Holliday junction ATP-dependent DNA helicase RuvA, ... Authors: Lin, Z, Qu, Q, Zhang, X, Zhou, Z. Deposit date: 2022-03-10 Release date: 2023-03-15 Last modified: 2023-09-20 Method: ELECTRON MICROSCOPY (7.02 Å) Cite: Cryo-EM structure of the RuvAB-Holliday junction intermediate complex from Pseudomonas aeruginosa. Front Plant Sci, 14, 2023
7X5B	Crystal structure of RuvB Descriptor: ADENOSINE-5'-DIPHOSPHATE, Holliday junction ATP-dependent DNA helicase RuvB Authors: Lin, Z, Qu, Q, Zhang, X, Zhou, Z, Dai, L. Deposit date: 2022-03-04 Release date: 2023-03-08 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.16 Å) Cite: Cryo-EM structure of the RuvAB-Holliday junction intermediate complex from Pseudomonas aeruginosa. Front Plant Sci, 14, 2023
7X7P	CryoEM structure of dsDNA-RuvB-RuvA domain3 complex Descriptor: DNA, Holliday junction ATP-dependent DNA helicase RuvA, Holliday junction ATP-dependent DNA helicase RuvB Authors: Lin, Z, Qu, Q, Zhang, X, Zhou, Z. Deposit date: 2022-03-10 Release date: 2023-03-15 Last modified: 2023-09-20 Method: ELECTRON MICROSCOPY (7.02 Å) Cite: Cryo-EM structure of the RuvAB-Holliday junction intermediate complex from Pseudomonas aeruginosa. Front Plant Sci, 14, 2023
7YKK	Cryo-EM structure of Drg1 hexamer treated with ADP Descriptor: ADENOSINE-5'-TRIPHOSPHATE, ATPase family gene 2 protein Authors: Ma, C.Y, Wu, D.M, Chen, Q, Gao, N. Deposit date: 2022-07-22 Release date: 2022-12-14 Method: ELECTRON MICROSCOPY (5.9 Å) Cite: Structural dynamics of AAA + ATPase Drg1 and mechanism of benzo-diazaborine inhibition. Nat Commun, 13, 2022
7YKT	Cryo-EM structure of Drg1 hexamer in helical state treated with ADP/AMPPNP/benzo-diazaborine Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATPase family gene 2 protein Authors: Ma, C.Y, Wu, D.M, Chen, Q, Gao, N. Deposit date: 2022-07-23 Release date: 2022-12-14 Method: ELECTRON MICROSCOPY (5.9 Å) Cite: Structural dynamics of AAA + ATPase Drg1 and mechanism of benzo-diazaborine inhibition. Nat Commun, 13, 2022
7YKZ	Cryo-EM structure of Drg1 hexamer in the planar state treated with ADP/AMPPNP/Diazaborine Descriptor: 2-(TOLUENE-4-SULFONYL)-2H-BENZO[D][1,2,3]DIAZABORININ-1-OL, ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ... Authors: Ma, C.Y, Wu, D.M, Chen, Q, Gao, N. Deposit date: 2022-07-25 Release date: 2022-12-14 Method: ELECTRON MICROSCOPY (4.3 Å) Cite: Structural dynamics of AAA + ATPase Drg1 and mechanism of benzo-diazaborine inhibition. Nat Commun, 13, 2022
7YKL	Cryo-EM structure of Drg1 hexamer treated with AMPPNP Descriptor: ADENOSINE-5'-TRIPHOSPHATE, ATPase family gene 2 protein Authors: Ma, C.Y, Wu, D.M, Chen, Q, Gao, N. Deposit date: 2022-07-22 Release date: 2022-12-14 Method: ELECTRON MICROSCOPY (5.6 Å) Cite: Structural dynamics of AAA + ATPase Drg1 and mechanism of benzo-diazaborine inhibition. Nat Commun, 13, 2022
7Y59	The cryo-EM structure of human ERAD retro-translocation complex Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Derlin-1, ... Authors: Cao, Y, Rao, B, Wang, Q, Yao, D, Xia, Y, Li, W, Li, S, Shen, Y. Deposit date: 2022-06-16 Release date: 2023-10-18 Last modified: 2024-04-03 Method: ELECTRON MICROSCOPY (4.51 Å) Cite: The cryo-EM structure of the human ERAD retrotranslocation complex. Sci Adv, 9, 2023
7Y4W	The cryo-EM structure of human ERAD retro-translocation complex Descriptor: ADENOSINE-5'-DIPHOSPHATE, Derlin-1, Transitional endoplasmic reticulum ATPase Authors: Cao, Y, Rao, B, Wang, Q, Yao, D, Xia, Y, Li, W, Li, S, Shen, Y. Deposit date: 2022-06-16 Release date: 2023-10-18 Last modified: 2024-04-03 Method: ELECTRON MICROSCOPY (3.67 Å) Cite: The cryo-EM structure of the human ERAD retrotranslocation complex. Sci Adv, 9, 2023
7Y53	The cryo-EM structure of human ERAD retro-translocation complex Descriptor: ADENOSINE-5'-DIPHOSPHATE, Derlin-1, Transitional endoplasmic reticulum ATPase Authors: Cao, Y, Rao, B, Wang, Q, Yao, D, Xia, Y, Li, W, Li, S, Shen, Y. Deposit date: 2022-06-16 Release date: 2023-10-18 Last modified: 2024-04-03 Method: ELECTRON MICROSCOPY (3.61 Å) Cite: The cryo-EM structure of the human ERAD retrotranslocation complex. Sci Adv, 9, 2023
7Z6H	Structure of DNA-bound human RAD17-RFC clamp loader and 9-1-1 checkpoint clamp Descriptor: Cell cycle checkpoint control protein RAD9A, Cell cycle checkpoint protein RAD1,Cell cycle checkpoint protein RAD17, Checkpoint protein HUS1, ... Authors: Day, M, Oliver, A.W, Pearl, L.H. Deposit date: 2022-03-11 Release date: 2022-05-04 Last modified: 2022-08-31 Method: ELECTRON MICROSCOPY (3.59 Å) Cite: Structure of the human RAD17-RFC clamp loader and 9-1-1 checkpoint clamp bound to a dsDNA-ssDNA junction. Nucleic Acids Res., 50, 2022
7Z11	Structure of substrate bound DRG1 (AFG2) Descriptor: ATPase family gene 2 protein, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, peptide substrate Authors: Prattes, M, Grishkovskaya, I, Bergler, H, Haselbach, D. Deposit date: 2022-02-24 Release date: 2022-09-21 Last modified: 2022-10-05 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Visualizing maturation factor extraction from the nascent ribosome by the AAA-ATPase Drg1. Nat.Struct.Mol.Biol., 29, 2022
7Z34	Structure of pre-60S particle bound to DRG1(AFG2). Descriptor: 35S pre-ribosomal RNA, 5.8S rRNA, 5S rRNA, ... Authors: Prattes, M, Grishkovskaya, I, Bergler, H, Haselbach, D. Deposit date: 2022-03-01 Release date: 2022-09-21 Last modified: 2023-07-19 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Visualizing maturation factor extraction from the nascent ribosome by the AAA-ATPase Drg1. Nat.Struct.Mol.Biol., 29, 2022
7ZBH	ATP-dependent zinc metalloprotease FtsH (BB0789) from Borrelia burgdorferi Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent zinc metalloprotease FtsH, ZINC ION Authors: Brangulis, K. Deposit date: 2022-03-23 Release date: 2023-04-05 Method: X-RAY DIFFRACTION (3.3 Å) Cite: ATP-dependent zinc metalloprotease FtsH (BB0789) from Borrelia burgdorferi To be published

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